Edwardsiella ictaluri: Difference between revisions

From MicrobeWiki, the student-edited microbiology resource
(Created page with "{{Uncurated}} thumb|300px|right|Legend. Image credit: Name or Publication. ==Classification== Domain; Phylum; Class; Order; family [Others may be used. Use [http://www.ncbi.nlm.nih.gov/Taxonomy/ NCBI] link to find] ===Species=== {| | height="10" bgcolor="#FFDF95" | '''NCBI: [https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=1007084&lvl=3&lin=f&keep=1&srchmode=1&unlock]''' |} ''Genus species'' ==Descript...")
 
No edit summary
 
(15 intermediate revisions by the same user not shown)
Line 1: Line 1:
{{Uncurated}}
{{Uncurated}}


[[Image:Filename.jpg|thumb|300px|right|Legend. Image credit: Name or Publication.]]
[[Image:e.ictaluri.jpg|thumb|300px|right|E. Ictalrui under microscope and stained.Google Images.]]


   
   
Line 9: Line 9:
   
   


Domain; Phylum; Class; Order; family [Others may be used. Use [http://www.ncbi.nlm.nih.gov/Taxonomy/ NCBI] link to find]
Domain: Bacteria. Phylum: Pseudodomonadota. Class: Gammaproteobacteria. Order: Enterobacterles. Family: Hafniaceae. Genus: Edwardsiella.  


   
   


===Species===
Species: <i>E. ictaluri</i>


{|
{|
Line 26: Line 26:


''Genus species''
''Genus species''


==Description and Significance==
==Description and Significance==
<i>Edwardsiella ictaluri</i> is a rod shaped, gram negative bacteria. They are small and motile, and anaerobic. It is typically found in freshwater and marine environments, typically present in the rivers of Japan, effecting Catfish, specifically channel catfish. It is found in the intestines of humans after eating an affected fish. When found on catfish, it is characterized externally by inflamed hemorrhagic foci on the skin which causes ulcers. This organism is important because of where it is found. Since we are in a coastal region, surrounded by oceans and channels/rivers, this bacteria could be found near us. It also impacts a food that our region eats often, catfish. This organism is very complex as well.


Describe the appearance, habitat, etc. of the organism, and why you think it is important.
==Genome Structure==


<i>Edwardsiella ictaluri</i> Genome shows 43,378 bp in length with 2615 core genomes. It contains 5592 pan genes and one circular chromosome. The chromosome contains 3,630,639 base pairs. An interesting fact is that this bacteria is known as "hole in the head" and when it is found on catfish, they are called "hole in the head catfish". This microbe contains 59 hypothetical proteins and 12 predicted proteins.


==Genome Structure==
==Cell Structure, Metabolism and Life Cycle==


Describe the size and content of the genome. How many chromosomes?  Circular or linear?  Other interesting features?  What is known about its sequence?
<i>Edwardsiella ictaluri</i> is a gram-negative bacteria. It has a flagella, allowing movement. It is anaerobic, meaning that it makes energy without oxygen. This bacteria distinctly produces hydrogen sulfide.


==Ecology and Pathogenesis==


==Cell Structure, Metabolism and Life Cycle==
<i>Edwardsiella ictaluri</i> are found in freshwater and marine environments. The <i>Edwardsiella ictaluri</i> creates a parasitic relationship with catfish and fish (in some cases humans). Its biogeochemical significance is that it produces hydrogen sulfide, which adds to acidic deposits in water and soil. Edwardsiella ictaluri does not contribute much to the environment, other than controlling the population of catfish and certain fish species. This organism causes disease such as meningitis, peritonitis, osteomyelitis, endocarditis, and more in humans. This can be caused when the microbe enters an open wound, or the infected fish is ingested. In fish, it just enters the body through the water. It has human hosts when the human enters infected waters or ingests the infected fish. Symptoms for humans include hemorrhagic gastroenteritis, edema, ascites, exophthalmos, and abnormal behavior. In fish, symptoms include hemorrhagic foci on skin, ulcers, and open wounds.


Interesting features of cell structure; how it gains energy; what important molecules it produces.
==References==
 


==Ecology and Pathogenesis==
Wikimedia Foundation. (2023, August 13). Edwardsiella Ictaluri. Wikipedia. https://en.wikipedia.org/wiki/Edwardsiella_ictaluri


Habitat; symbiosis; biogeochemical significance; contributions to environment.<br>
cooney,  s, o’brien,  s, Iversen, C., &amp; Fanning, S. (2014, January 13). Bacteria: Other pathogenic Enterobacteriaceae – Enterobacter and other genera. Encyclopedia of Food Safety. https://www.sciencedirect.com/science/article/abs/pii/B9780123786128001049


If relevant, how does this organism cause disease? Human, animal, plant hosts? Virulence factors, as well as patient symptoms.<br><br>
Actor, J. K. (2012, March 21). Clinical bacteriology. Elsevier’s Integrated Review Immunology and Microbiology (Second Edition). https://www.sciencedirect.com/science/article/abs/pii/B9780323074476000120


Hirai, Y., Asahata-Tago, S., Ainoda, Y., Fujita, T., &amp; Kikuchi, K. (2015, November). Edwardsiella tarda bacteremia. A rare but fatal water- and foodborne infection: Review of the literature and clinical cases from a single centre. The Canadian journal of infectious diseases &amp; medical microbiology = Journal canadien des maladies infectieuses et de la microbiologie medicale. https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4692300/#:~:text=Extraintestinal%20infections%2C%20such%20as%20endocarditis,have%20been%20reported%20less%20frequently.


==References==
Yasuike, M., kai,  wataru, Nakamura, Y., &amp; Fujiwara, A. (2014, April 3). Genome sequence of fusarium graminearum isolate CS3005. https://journals.asm.org/doi/10.1128/genomeA.00227-14


[Sample reference] [http://ijs.sgmjournals.org/cgi/reprint/50/2/489 Takai, K., Sugai, A., Itoh, T., and Horikoshi, K. "''Palaeococcus ferrophilus'' gen. nov., sp. nov., a barophilic, hyperthermophilic archaeon from a deep-sea hydrothermal vent chimney". ''International Journal of Systematic and Evolutionary Microbiology''. 2000. Volume 50. p. 489-500.]
Yasuike, M., Kai, W., Nakamura, Y., Fujiwara, A., Kawato, Y., Hassan, E. S., Mahmoud, M. M., Nagai, S., Kobayashi, T., Ototake, M., &amp; Nakai, T. (2014, April 3). Complete genome sequence of the edwardsiella ictaluri-specific bacteriophage pei21, isolated from river water in Japan. Genome announcements. https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3974935/


U.S. National Library of Medicine. (n.d.). Taxonomy browser (Edwardsiella ictaluri). National Center for Biotechnology Information. https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&amp;id=67780&amp;lvl=3&amp;lin=f&amp;keep=1&amp;srchmode=1&amp;unlock


==Author==
==Author==


Page authored by _____, student of Prof. Bradley Tolar at UNC Wilmington.
Page authored by Emily Smith, student of Prof. Bradley Tolar at UNC Wilmington.


   
   


<!-- Do not remove this line-->[[Category:Pages edited by students of Bradley Tolar at UNC Wilmington]]
<!-- Do not remove this line-->[[Category:Pages edited by students of Bradley Tolar at UNC Wilmington]]

Latest revision as of 03:46, 9 December 2023

This student page has not been curated.
E. Ictalrui under microscope and stained.Google Images.


Classification

Domain: Bacteria. Phylum: Pseudodomonadota. Class: Gammaproteobacteria. Order: Enterobacterles. Family: Hafniaceae. Genus: Edwardsiella.


Species: E. ictaluri

NCBI: [1]


Genus species

Description and Significance

Edwardsiella ictaluri is a rod shaped, gram negative bacteria. They are small and motile, and anaerobic. It is typically found in freshwater and marine environments, typically present in the rivers of Japan, effecting Catfish, specifically channel catfish. It is found in the intestines of humans after eating an affected fish. When found on catfish, it is characterized externally by inflamed hemorrhagic foci on the skin which causes ulcers. This organism is important because of where it is found. Since we are in a coastal region, surrounded by oceans and channels/rivers, this bacteria could be found near us. It also impacts a food that our region eats often, catfish. This organism is very complex as well.

Genome Structure

Edwardsiella ictaluri Genome shows 43,378 bp in length with 2615 core genomes. It contains 5592 pan genes and one circular chromosome. The chromosome contains 3,630,639 base pairs. An interesting fact is that this bacteria is known as "hole in the head" and when it is found on catfish, they are called "hole in the head catfish". This microbe contains 59 hypothetical proteins and 12 predicted proteins.

Cell Structure, Metabolism and Life Cycle

Edwardsiella ictaluri is a gram-negative bacteria. It has a flagella, allowing movement. It is anaerobic, meaning that it makes energy without oxygen. This bacteria distinctly produces hydrogen sulfide.

Ecology and Pathogenesis

Edwardsiella ictaluri are found in freshwater and marine environments. The Edwardsiella ictaluri creates a parasitic relationship with catfish and fish (in some cases humans). Its biogeochemical significance is that it produces hydrogen sulfide, which adds to acidic deposits in water and soil. Edwardsiella ictaluri does not contribute much to the environment, other than controlling the population of catfish and certain fish species. This organism causes disease such as meningitis, peritonitis, osteomyelitis, endocarditis, and more in humans. This can be caused when the microbe enters an open wound, or the infected fish is ingested. In fish, it just enters the body through the water. It has human hosts when the human enters infected waters or ingests the infected fish. Symptoms for humans include hemorrhagic gastroenteritis, edema, ascites, exophthalmos, and abnormal behavior. In fish, symptoms include hemorrhagic foci on skin, ulcers, and open wounds.

References

Wikimedia Foundation. (2023, August 13). Edwardsiella Ictaluri. Wikipedia. https://en.wikipedia.org/wiki/Edwardsiella_ictaluri

cooney, s, o’brien, s, Iversen, C., & Fanning, S. (2014, January 13). Bacteria: Other pathogenic Enterobacteriaceae – Enterobacter and other genera. Encyclopedia of Food Safety. https://www.sciencedirect.com/science/article/abs/pii/B9780123786128001049

Actor, J. K. (2012, March 21). Clinical bacteriology. Elsevier’s Integrated Review Immunology and Microbiology (Second Edition). https://www.sciencedirect.com/science/article/abs/pii/B9780323074476000120

Hirai, Y., Asahata-Tago, S., Ainoda, Y., Fujita, T., & Kikuchi, K. (2015, November). Edwardsiella tarda bacteremia. A rare but fatal water- and foodborne infection: Review of the literature and clinical cases from a single centre. The Canadian journal of infectious diseases & medical microbiology = Journal canadien des maladies infectieuses et de la microbiologie medicale. https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4692300/#:~:text=Extraintestinal%20infections%2C%20such%20as%20endocarditis,have%20been%20reported%20less%20frequently.

Yasuike, M., kai, wataru, Nakamura, Y., & Fujiwara, A. (2014, April 3). Genome sequence of fusarium graminearum isolate CS3005. https://journals.asm.org/doi/10.1128/genomeA.00227-14

Yasuike, M., Kai, W., Nakamura, Y., Fujiwara, A., Kawato, Y., Hassan, E. S., Mahmoud, M. M., Nagai, S., Kobayashi, T., Ototake, M., & Nakai, T. (2014, April 3). Complete genome sequence of the edwardsiella ictaluri-specific bacteriophage pei21, isolated from river water in Japan. Genome announcements. https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3974935/

U.S. National Library of Medicine. (n.d.). Taxonomy browser (Edwardsiella ictaluri). National Center for Biotechnology Information. https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=67780&lvl=3&lin=f&keep=1&srchmode=1&unlock

Author

Page authored by Emily Smith, student of Prof. Bradley Tolar at UNC Wilmington.