Difference between revisions of "Desert rock"

From MicrobeWiki, the student-edited microbiology resource
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{{Biorealm Niche}}
 
{{Biorealm Niche}}
  
This template is a general guideline of how to design your site.  You are not restricted to this format, so feel free to make changes to the headings and subheadings and to add additional sections as appropriate. 
 
  
  
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==Lichens==
 
==Lichens==
 
===Overview===
 
===Overview===
Lichens are unique organisms that consists of a symbiotic relationship between fungal filaments and algae or cyanobacteria. Algae and cyanobacteria are known as photobionts, while the fungal component of lichen is called a mycobiont. Algae are photosynthetic and provide the fungus with carbohydrates which can be used to produce energy. Cyanobacteria on the other hand, fix nitrogen or carbon which the fungal can use to synthesize amino acids and carbohydrates respectively. The fungus can also be considered a parasite because it provides no dehydration protection or nutrients for the photobionts.
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Lichens are unique organisms that consists of a symbiotic relationship between fungal filaments and algae or [[cyanobacteria]]. Algae and cyanobacteria are known as photobionts, while the fungal component of lichen is called a mycobiont. Algae are photosynthetic and provide the fungus with carbohydrates which can be used to produce energy. Cyanobacteria on the other hand, fix nitrogen or carbon which the fungal can use to synthesize amino acids and carbohydrates respectively. The fungus can also be considered a parasite because it provides no dehydration protection or nutrients for the photobionts.
  
  
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===Changes to Environment===
 
===Changes to Environment===
 
Most lichens change the diverse environment they live in. They can form fruticose which looks like shrubs, foliose which are like leaves, crustose which are like a crust on the surfaces they are in contact with. Lichens are also known to weather rocks through chemical and physical methods. Chemical weathering of rocks is due to the secretion of oxalic acid converted from insoluble carbonates and silicates. Physical weathering of rocks is done by contracting and swelling of the body of the lichen. Swelling of the body of the lichen happens during wet periods, while contracting happens during the dry periods of the lichen. The changes in size of the lichen help those that are embedded in cracks of rocks to break the rock apart.
 
Most lichens change the diverse environment they live in. They can form fruticose which looks like shrubs, foliose which are like leaves, crustose which are like a crust on the surfaces they are in contact with. Lichens are also known to weather rocks through chemical and physical methods. Chemical weathering of rocks is due to the secretion of oxalic acid converted from insoluble carbonates and silicates. Physical weathering of rocks is done by contracting and swelling of the body of the lichen. Swelling of the body of the lichen happens during wet periods, while contracting happens during the dry periods of the lichen. The changes in size of the lichen help those that are embedded in cracks of rocks to break the rock apart.
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[[Image:wiki.png|frame|Wikipedia Encyclopedia]]
  
  
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==References==
 
==References==
  
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Barnouin-Jha, K., O. Barnouin-Jha, J. Bishop, J. Johnson, H. McSween and R. Morris. "Oldest Desert Varnish-like Coatings and Young
  
Hawksworth, David L. “The Nature of Lichens” Encyclopedia of Life Science. University of California, San Diego, La Jolla, CA.  
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Breccias at the Mars Pathfinder" Lunar and Planetary Science XXXV. 20 August 2008.  
  
22 Jan. 2002.  <http//mrw.interscience.wiley.com>
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<http://www.lpi.usra.edu/meetings/lpsc2004/pdf/1740.pdf>
  
  
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Douglas, Angela E. “Algal Symbioses.” Encyclopedia of Life Science. University of California, San Diego, La Jolla, CA. 25 April. 2002.
  
Douglas, Angela E. “Algal Symbioses” Encyclopedia of Life Science. University of California, San Diego, La Jolla, CA. 25 April. 2002.
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<http://www.mrw.interscience.wiley.com/emrw/9780470015902/els/article/a0000327/current/pdf>
  
<http//mrw.interscience.wiley.com>
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Emery, D.R., F.E. Palmer, J.T. Stanley, J.Stemmler. "Survival and Growth of Microcolonial Rock Fungi as Affected By Temperature and
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Humidity" JSOTR. <http://www.jstor.org/stable/2434887?seq=1&cookieSet=1>
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Hawksworth, David L. “The Nature of Lichens.” Encyclopedia of Life Science. University of California, San Diego, La Jolla, CA.
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22 Jan. 2002.  <http://mrw.interscience.wiley.com/emrw/9780470015902/els/article/a0000368/current/pdf>
  
  
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Barnouin-Jha, K., O. Barnouin-Jha, J. Bishop, J. Johnson, H. McSween and R. Morris. "Oldest Desert Varnish-like Coatings and Young
 
 
Breccias at the Mars Pathfinder" Lunar and Planetary Science XXXV. 20 August 2008.
 
 
<http://www.lpi.usra.edu/meetings/lpsc2004/pdf/1740.pdf>
 
 
 
 
Emery, D.R., F.E. Palmer, J.T. Stanley, J.Stemmler. "Survival and Growth of Microcolonial Rock Fungi as Affected By Temperature and
 
 
Humidity" JSOTR. <http://www.jstor.org/stable/2434887?seq=1&cookieSet=1>
 
  
  
  
 
Edited by [Priya Patel, Fatima Khan, Luanne Cabiling], students of [mailto:ralarsen@ucsd.edu Rachel Larsen]
 
Edited by [Priya Patel, Fatima Khan, Luanne Cabiling], students of [mailto:ralarsen@ucsd.edu Rachel Larsen]

Revision as of 19:36, 28 August 2008

Template:Biorealm Niche


Description of Niche

Biofilm

Desert Varnish

Environment

Desert varnish appear in arid desert conditions such as long periods of drought and sporadic periods of severe rain. Desert varnish is a dark, thin coat found on the surfaces of desert rocks. Because of the it's hostile environment, desert varnish house only a few xerophilic organisms. Some primary inhabitants are endospore forming bacteria and microcolonial fungi. These microorganisms have acquired survival skills in able to endure high temperatures, intense UV radiation and low nutrient supply.


Physical and Chemical Conditions

Desert varnish is mostly made up of clay minerals and Iron and Manganese oxides. These two oxides give the desert varnish its red or black colors, respectively. Endospore forming microbes, specifically Gram positive bacteria, are responsible for it's Manganese oxidation. These include Micrococcus, Planococcus, Arthrobacter, Deodermatophilus, and Bacillus. Dying bacteria secrete amino acids, also contributing to the varnish coating and biominerals.


Cell walls of gram positive bacteria contain oligosaccharides, teichoic acids and sugar lipids. These components interact with sand grains on rock surfaces. As it attaches, it secretes a sticky, viscous material called extracellular polymeric substances (EPS). This polysaccharide coat is important for biofilm formation, protection from harsh conditions and attachment onto rock surfaces. EPS also keeps essential metals and nutrients from escaping.


Along with microbacteria, black, yeast-like fungi called microcolonial fungi (MCF) influence desert varnish formation. MCF are chemoorganotrophs, using organic compounds as a source of energy. In addition, MCF have microsporines, melanin and carotinoids that shield them from UV radiation.


Current Research

Desert varnish are capable of preserving microbial fossilization, which may include bacterial and fungal casts. These fossils are primarily found on the surface of rock varnish. Desert varnish, however, are easily eroded by lower pH conditions (acid rain) or a weathering polysaccharide coat. Therefore, most preserved structures are lost. Current research are taking use of desert varnish biosignatures as a potential record of environmental processes, such as climate change and global warming.


Other research include using desert varnish as evidence for the colonization of extraterrestrial life forms. Rock coatings and possible biosignatures on rock surfaces may exist on other meteorites, particularly on Mars. Varnish-like structures on rocks found at the Mars pathfinder landing site have furthered this curiosity.



Lichens

Overview

Lichens are unique organisms that consists of a symbiotic relationship between fungal filaments and algae or cyanobacteria. Algae and cyanobacteria are known as photobionts, while the fungal component of lichen is called a mycobiont. Algae are photosynthetic and provide the fungus with carbohydrates which can be used to produce energy. Cyanobacteria on the other hand, fix nitrogen or carbon which the fungal can use to synthesize amino acids and carbohydrates respectively. The fungus can also be considered a parasite because it provides no dehydration protection or nutrients for the photobionts.


Environment

Lichens can inhabit a diverse environment ranging from deserts and tundras all over the world covering an estimated 8% of all land. Lichens can be found in deserts such as Saudi Arabia, Australia and North America. In these environments lichens are situated on tree barks, leaves, ground, and rocks.


As stated earlier lichens come in many form, each with different roles and adaptations that suit their environment. Many of these lichens can occupy the same niche but over time the lichen that has the best adaptations for the environment will have a higher growth rate and a lower death rate, and out live the poorly suited lichen. Lichens can even overgrow and kill mosses that are in their niche by excreting toxins. Lichens are also known to produce useful antibodies and dyes that have been harnessed by humans.


Lichens can survive in extreme desert heat. In the desert Lichens can survive up to -60 º to 55 º Celsius which is -76 to 131º Fahrenheit. The water content for lichens can vary from 2%-300% dry weight. The low water content lichens are ideal for desert rock lichens because deserts are known for their miniscule or non-existent precipitation. Due to the lack of precipitation, lichens obtain most of their water from the atmosphere and morning dews. When not enough water is obtained from the atmosphere the lichen turns off metabolic processes and go dormant, which can last several years. However when a small amount of water is obtained from morning dews the lichen comes out of its dormant stage and resumes physiological activities. Compared to cyanobacteria, algae are more adaptive at low water levels and can occupy desert niches better.


Symbiotic Relationship

Since Lichens are composed of a symbiotic relationship between fungus and photosynthetic algae there can be many combinations of lichens. It is estimated that 85 percent of the photobiont are eukaryotic algae while 10 percent are cyanobacteria and 5 percent are a combination of cyanobacteria and eukaryotic algae. Some examples of alga are trebouxia, Pseudotrebouxia, and Trentepohlia while some examples of cyanobactera are Nostoc and Scytonema. The fungi that are in the symbiotic relationship can be Ascomycota, Basidiomycota, or Conidial fungi.


The relationship between the fungal and the alga or cyanobacteria can be considered to be parasitic because the fungal benefits from the photobionts but the photobionts do not benefit from the fungal. Studies using radioactively labeled carbon have shown that photobionts retain only 20% of the carbon they fix, while they transport 80% of the fixed carbon the fungus. Algae release the carbon they fix in the form of glucose, while cyanobacteria release carbons in the form of polyhydric alcohols. These forms of carbon can then move on to provide energy for the photobionts and the mycobionts.


Cyanobacteria, particularly Nostoc, are unique from alga because along with fixing carbon they also fix nitrogen into ammonia. Most of the ammonia is actually used by the fungus to synthesis necessary amino acids


Changes to Environment

Most lichens change the diverse environment they live in. They can form fruticose which looks like shrubs, foliose which are like leaves, crustose which are like a crust on the surfaces they are in contact with. Lichens are also known to weather rocks through chemical and physical methods. Chemical weathering of rocks is due to the secretion of oxalic acid converted from insoluble carbonates and silicates. Physical weathering of rocks is done by contracting and swelling of the body of the lichen. Swelling of the body of the lichen happens during wet periods, while contracting happens during the dry periods of the lichen. The changes in size of the lichen help those that are embedded in cracks of rocks to break the rock apart.

Wikipedia Encyclopedia


On June 6, 2005, U.S reserachers

References

Barnouin-Jha, K., O. Barnouin-Jha, J. Bishop, J. Johnson, H. McSween and R. Morris. "Oldest Desert Varnish-like Coatings and Young

Breccias at the Mars Pathfinder" Lunar and Planetary Science XXXV. 20 August 2008.

<http://www.lpi.usra.edu/meetings/lpsc2004/pdf/1740.pdf>


Douglas, Angela E. “Algal Symbioses.” Encyclopedia of Life Science. University of California, San Diego, La Jolla, CA. 25 April. 2002.

<http://www.mrw.interscience.wiley.com/emrw/9780470015902/els/article/a0000327/current/pdf>

Emery, D.R., F.E. Palmer, J.T. Stanley, J.Stemmler. "Survival and Growth of Microcolonial Rock Fungi as Affected By Temperature and

Humidity" JSOTR. <http://www.jstor.org/stable/2434887?seq=1&cookieSet=1>


Hawksworth, David L. “The Nature of Lichens.” Encyclopedia of Life Science. University of California, San Diego, La Jolla, CA.

22 Jan. 2002. <http://mrw.interscience.wiley.com/emrw/9780470015902/els/article/a0000368/current/pdf>


"Microbial Masons". American Association for the Advancement of Science. 20 May 1998.

<http://sciencenow.sciencemag.org/cgi/content/full/1998/520/4>


Rakovan, John. "Desert Varnish" Department of Deology, Miami University.

<http://www.users.muohio.edu/rakovajf/WTTW%20Desert%20Varnish.pdf>




Edited by [Priya Patel, Fatima Khan, Luanne Cabiling], students of Rachel Larsen