Difference between revisions of "Desulfovibrio desulfuricans"

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(Description and significance)
(16S Ribosomal RNA Gene Information)
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=16S Ribosomal RNA Gene Information=
 
=16S Ribosomal RNA Gene Information=
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'''16S Ribosomal RNA Gene Information'''
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'''FIG. 2. 16S rRNA Gene Phylogeny for the Genus ''Desulfovibrio'''''
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The tree was based on the aligned gene sequence of 16S rRNA from 49 type species of ''Desulfovibrio'', plus 13 additional species of ''Desulfovibrio'' that have been tested for mercury methylation ability. Type strains are indicated by “(T)”. Strains are able to produce methylmercury are shown in blue, those unable to do so are in red, and strains that have not been tested are in black. From Gilmour et al. (2011).
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The 16S rRNA sequencing of ''Desulfovibrio desulfuricans'' ND132 is currently designated within the family of desulfuricans (Figure 2), however, there is much similarity between this strain and strains of ''D. dechloroacetivorans'' (98-99%) indicating proof its phylogenetic placement should be reconsidered (Brown et al., 2011).   
  
 
=Genome Structure (if the genome exists)=
 
=Genome Structure (if the genome exists)=

Revision as of 20:00, 2 December 2016

Classification

Higher order taxa

Domain Bacteria; Phylum Proteobacteria; Class Deltaproteobacteria; Order Desulfovibrionales; Family Desulfovibrionaceae; Genus Desulfovibrio (Madigan, et al., 2012).

Species

Desulfovibrio desulfuricans (also known as strain ND 132)

http://aem.asm.org/content/77/12/3938/F1.large.jpg

Description and significance

Desulfovibrio desulfuricans strain ND 132 was isolated from Chesapeake Bay sediments in May 1985 (Gilmour et al., 2011).  Its cells are gram-negative, slightly curved rods (Gilmour et al., 2011) (Figure 1).   D. desulfuricans ND 132 is an anaerobic sulfate-reducing bacterium which has the ability to produce methylmercury (MeHg), a powerful neurotoxin in humans (Brown et al., 2011). Sulfate-reducing bacteria are found in oxic-anoxic zones of sediments and soils where methylation rates are very high (Jay et al., 2016).  MeHg production has many implications as having powerful bioaccumulating abilities throughout food webs, causing much damage to ecosystems, in addition to being a neurotoxin.

16S Ribosomal RNA Gene Information

16S Ribosomal RNA Gene Information

FIG. 2. 16S rRNA Gene Phylogeny for the Genus Desulfovibrio The tree was based on the aligned gene sequence of 16S rRNA from 49 type species of Desulfovibrio, plus 13 additional species of Desulfovibrio that have been tested for mercury methylation ability. Type strains are indicated by “(T)”. Strains are able to produce methylmercury are shown in blue, those unable to do so are in red, and strains that have not been tested are in black. From Gilmour et al. (2011).

The 16S rRNA sequencing of Desulfovibrio desulfuricans ND132 is currently designated within the family of desulfuricans (Figure 2), however, there is much similarity between this strain and strains of D. dechloroacetivorans (98-99%) indicating proof its phylogenetic placement should be reconsidered (Brown et al., 2011).   

Genome Structure (if the genome exists)

Cell structure and metabolism

D. desulfuricans strain ND 132 is an anaerobic dissimilatory sulfate-reducing bacterium. This strain ND132 can be isolated from estuarine sediment and anoxic saltmarsh sediment (Compeau and Bartha, 1985). Due to high production of methylmercury that occurs during the sulfate reduction, the production of mercury is linked to Hg-specific uptake pathway and biochemistry of Hg binding which depends on enzyme methyltransferase (Gilmour et. al., 2011).

Ecology and Pathogenesis

Sulfate reducers thrive in marine systems, owing to the high concentration of sulfate ions in seawater. They can be found in various environments such as oil field production waters, acid mine drainage waters, sewage, and soil. However the genetic structures of the sulfate-reducing bacteria differ in different environments (Verstreken et. al., 2012). This proves that Desulfovibrio desulfuricans has an excellent ability to adapt to its surroundings while maintaining an optimal cell structure for nutrient uptake and allows for the anaerobic production of methylmercury. D. desulfuricans are not known to be pathogenic, however an infection of this microbe into the human body can prove to be detrimental to one’s health. We see an example of this in the case of a 69 year old woman who had been hospitalized with complaints of stomach irritation, irregular bowel movements, diarrhea, and fever. The final diagnoses being D. desulfuricans bacteremia occurring in an immunocompromised host with CMV colitis (Voorduow et. al., 1995). Doctors then incubated the strain revealing a resistance to piperacillin-tazobactam. Desulfovibrio desulfuricans culture under anoxic conditions is more likely to form colonies in free living cells than particle associated environments (Voorduow et. al., 1995).

Current Research

Desulfovibro desulfuricans strain ND132 presents an excellent opportunity for the study of mercury methylation because while being a typical anaerobic mesophilic bacterium with wide tolerance of pH and salinity, it also grows well with fumurate as electron acceptor, which prevents sulfide inhibition of mercury methylation (Gilmour et al., 2011). Its genome sequencing allows comparative transcriptomic and proteomic study against other Desulfovibrio species (Gilmour, et al., 2011) Additional research includes the effects of large colony blooms in seawater and effects of infections in the human body by D. desulfuricans. One of the main research proposals currently being performed on D.desulfuricans is the study of how methylmercury production occurs with this organism’s cellular respiration. D.desulfuricans is the only organism in which pathways of its methylation have been somewhat defined (Gilmour et. al., 2011). This team of scientists used enriched stable mercury isotopes to show that ND132 simultaneously produces and degrades methylmercury (MeHg) during growth but does not produce elemental Hg. A large colony of strain ND132 may cause harm to someone who comes in contact with the colony as methylmercury is known to cause brain and nervous system damage. There is still much research that can be done on this organism which may prove beneficial to human society as we learn about new ways to prevent corrosion caused by ND132, or as we may be able to utilize their respiration in some wastewater treatment plants.

References

Brown, S. D., Gilmour, C. C., Kucken, A. M., Wall, J. D., Elias, D. A., Brandt, C. C., … Palumbo, A. V. (2011). Genome Sequence of the Mercury-Methylating Strain Desulfovibrio desulfuricans ND132. J. Bacteriol, 193(8): 2078-2079.

Compeau, G. C., & Bartha, R. (1985). Sulfate-reducing bacteria: principal methylators of mercury in anoxic estuarine sediment. Applied and environmental microbiology, 50(2), 498-502.

Desulfovibrio desulfuricans ND132. (n.d.). Retrieved October 02, 2016, from http://www.p2cs.org/page.php?base=Desd2DB

Desulfovibrio desulfuricans G20. (n.d.). Retrieved October 03, 2016, from http://jcm.asm.org/content/50/1/199.full http://genome.jgi.doe.gov/desde/desde.home.html

xGilmour, C., Elias, D., Kucken, A., Brown, S., Palumbo, A., Schadt, C., & Wall, J. (2011). Sulfate-Reducing Bacterium Desulfovibrio desulfuricans ND132 as a Model for Understanding Bacterial Mercury Methylation. Applied and environmental microbiology, 77(12). doi:10.1128/AEM.02993-10.

Jay, J., Murray, K., Gilmour, C., Mason, R., Morel, F., Roberts, A., & Hemond, H. (2016). Mercury Methylation by Desulfovibrio desulfuricans ND132 in the Presence of Polysulfides. Applied and Environmental Microbiology, 82(20). Doi:10.1128/AEM.68.11.5741-5745.2002. http://www.nature.com/articles/srep12872

xMadigan, M. T., Martinko, J. M., Stahl, D. A., & Clark, D. P. (2012). Brock biology of microorganisms. Boston [etc.: B. Cummings Mardis E. R. 2008. Next-generation DNA sequencing methods. Annu. Rev. Genomics Hum. Genet. 9:387–402.

Podar, M., Gilmour, C. C., Brandt, C. C., Soren, A., Brown, S. D., Crable, B. R., . . . Elias, D. A. (2015). Global prevalence and distribution of genes and microorganisms involved in mercury methylation.

Rani, A., Rockne, K. J., Drummond, J., Al-Hinai, M., & Ranjan, R. (2015, August 14). Geochemical influences and mercury methylation of a dental wastewater microbiome [Abstract]. Scientific Reports, 5(12872). doi:10.1038/srep12872

Steger, J., Vincent, C., Ballard, J., Krumholtz, L. (2016, October). Desulfovibrio sp. Genes involved in the Respiration of Sulfate during Metabolism of Hydrogen and Lactate. Applied and Environmental Microbiology, 82(20). Doi: 10.1128/AEM.68.4.1932-1937.2002.

xVoordouw, G. (1995). The Genus Desulfovibrio: The Centennial. Applied and Environmental Microbiology, 61(8). Pg 2813-2819. Retrieved from: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1388543/pdf/hw2813.pdf

xVerstreken, I., Lalemanb, W., Wauters, G., & Verhaegen, J. (2012). Desulfovibrio desulfuricans bacteremia in an immunocompromized host with a liver graft abd ulcerative colitis. American Society for Microbiology. 54(11). doi:10.1128/JCM.00987-11.

Author

Page created by Cameron Garcia, Christina Lopardo, Luka Ndungu, Rachel Smolinski, students of Dr. Hidetoshi Urakawa at Florida Gulf Coast University.