Difference between revisions of "Dietzia cinnamea"

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The full DNA code for ''D.cinnamea'' has been partially sequenced and contains 3,555,295 bp (NCBI Nucleotide):[http://www.ncbi.nlm.nih.gov/sites/entrez?db=nuccore&cmd=DetailsSearch&term=dietzia+cinnamea&save_search=true].
 
The full DNA code for ''D.cinnamea'' has been partially sequenced and contains 3,555,295 bp (NCBI Nucleotide):[http://www.ncbi.nlm.nih.gov/sites/entrez?db=nuccore&cmd=DetailsSearch&term=dietzia+cinnamea&save_search=true].
 
''D.cinnamea'' has a GC content of 72.3% (Von der Weid, 2006).
 
''D.cinnamea'' has a GC content of 72.3% (Von der Weid, 2006).
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The soil extraction sample DNA was sequenced with a 16S rDNA and it was found to have a 99.8% similarity to ''D.cinnamea'' that was found in the previous bone marrow transplant swab.  When testing DNA-DNA similarities, the strains were 93.3% homologous with the transplant swab.  A 70% threshold of DNA-DNA similarity is required to include it in the species.  This confirms the strain found in the soil sample is part of the species ''D.cinnamea''.  This species has a 30-50% genome similarity with the other species of ''Dietzia'' (''D.maris'' 52.4%, ''D.natronolimnaea''' 56.3%, ''D.psychraicliphila'' 37.8%)(Von der Weid, 2006).
  
 
==Cell Structure, Metabolism, and Life Cycle==
 
==Cell Structure, Metabolism, and Life Cycle==

Revision as of 20:08, 23 April 2011

Classification

Bacteria

Actinobacteria

Actinobacteria

Actinomycetales

Corynebacterineae

Dietziaceae

Dietzia

NCBI Taxonomy ID:[1]

Species: Dietzia cinnamea

Description and Significance

Samples of this organism have been extracted from petroleum contaminated soil characterized in acidic sandy loam Cambisol soil in a protected habitat in Rio de Janeiro state, Brazil as well as the perianal swab from a patient with a bone marrow transplant (Yassin, 2006; von der Weid, 2006). Multiple strains of Dietzia have been found in soil, deep sea sediment, and soda lakes (Gerday & Glansdorff, 2007).Dietzia cinnamea is rod shaped in the medical swab while the P4 strain from the soil samples produces a coccoid shape. The organism is approximately 1.4 micrometers long, forms smooth, yellow to orange colonies on agar plates once isolated and is single or arranges in small connected colonies (Von der Weid, 2006). It is gram positive and has a high G+C content, meaning a high number of Guanine and Cytosine linkages in its DNA(Von der Weid, 2006). It displays snapping division, which is the arrangement of cells in a palisade or angular manor after binary fission (Prescott, 2002). This is a characteristic of the genera Arthrobacter and Corynebacterium.

D. cinnamea is capable of degrading a range of petroleum hydrocarbons which can have beneficial environmental implications in today’s world. Other genera that have hydrocarbon degrading strains include Mycobacterium, Rhodococcus, and Dietzia. The strain P4 is able to degrade a range of n-alkanes (C11-C36), pristane, and phytane and is able to grow in the presence of carbazole, quinoline, naphthalene, toluene, gasoline, and diesel (Von der Weid, 2006).

Figure 1. Neighbour-joining tree showing the position of strain IMMIB RIV-399T (=DSM 44904T=CCUG 50875T) within the radiation of the mycolic acid-containing taxa. Thetree was based on a comparison of sequences that were at least 90 % complete (with regard to E. coli sequence). Bar, 10·0 % sequence divergence (Yassin, 2006).

Genome Structure

The full DNA code for D.cinnamea has been partially sequenced and contains 3,555,295 bp (NCBI Nucleotide):[2]. D.cinnamea has a GC content of 72.3% (Von der Weid, 2006). The soil extraction sample DNA was sequenced with a 16S rDNA and it was found to have a 99.8% similarity to D.cinnamea that was found in the previous bone marrow transplant swab. When testing DNA-DNA similarities, the strains were 93.3% homologous with the transplant swab. A 70% threshold of DNA-DNA similarity is required to include it in the species. This confirms the strain found in the soil sample is part of the species D.cinnamea. This species has a 30-50% genome similarity with the other species of Dietzia (D.maris 52.4%, D.natronolimnaea' 56.3%, D.psychraicliphila 37.8%)(Von der Weid, 2006).

Cell Structure, Metabolism, and Life Cycle

D.cinnamea is an aerobic organotroph. It’s optimal growth temperature is between 22-45⁰ C and extracts carbon from acetate, D-glucose, maltose, and 1,2-propanediol (Yassin, 2006). Capable of growing between pH 6 to 10 and is slightly halotolerant effectively growing in 10% NaCl concentration.

Reduces nitrate to nitrite.

D.cinnamea displaying coccoid to ovoid shape and colonies (Von der Weid, 2006).

Ecology and Pathogenesis

Dietzia has been found in multiple habitats including soil, deep sea sediment, and soda lakes.

References

Gerday, C., & Glansdorff, N. (2007). Physiology and biochemistry of extremophiles. Washington, D.C.: American Society for Mircrobiology Press.

Prescott, L., Klein, D., & Harley, J. (2002). Microbiology. Retrieved from Online Learning Center: http://highered.mcgraw-hill.com/sites/0072320419/student_view0/glossary_s-z.html

Von Der Weid, I., Marques, J. M., Cunha, C. D., Lippi, R. K., Dos Santos, S. C. C., Rosado, A. S., Lins, U., et al. (2007). Identification and biodegradation potential of a novel strain of Dietzia cinnamea isolated from a petroleum-contaminated tropical soil. Systematic and applied microbiology, 30(4), 331-339. Retrieved from http://www.ncbi.nlm.nih.gov/pubmed/1717450

Yassin, A., Hupfer, H., & Schaal, K. (2006). Dietzia cinnamea sp.nov., a novel species isolated from a perianal swab of a patient with a bone marrow transplant. International Journal of Systematic and Evolutionary Microbiology , 641-645.

Authors

This page was created by Jennifer Jury and Elizabeth ___, students of Prof. Jay Lennon's Microbial Ecology Class at MSU.