Difference between revisions of "Gluconobacter oxydans"
Revision as of 19:17, 23 May 2007
A Microbial Biorealm page on the genus Gluconobacter oxydans
Higher order taxa
Domain: Bacteria; Phylum: Proteobacteria; Class: Alphaproteobacteria; Order: Rhodospirillales; Family: Acetobacteraceae; Genus: Gluconobacter; Species: oxydans [Others may be used. Use NCBI link to find]
Description and significance
Describe the appearance, habitat, etc. of the organism, and why it is important enough to have its genome sequenced. Describe how and where it was isolated. Include a picture or two (with sources) if you can find them. Gluconobacter oxydans, previously known as Acetobacter suboxydans, are Gram-negative rod or oval shaped bacterium ranging from about 0.5 to 0.8mm x to 4.2mm. They tend to have a small genome size because of their limited metabolic abilities. These abilites include partially oxidizing carbohydrates and alcohols through the process of oxidative fermentation, and they can be used for sythesis of Vitamin C, D-gluconis acid and ketogluconic acids. G. oxydans are found in flowers, fruits, garden soil, alcoholic beverages, cider, and soft drinks because they are capable of growing strains in high concentrations of sugar solutions and low pH values (optimal pH for growth is 5.5-6.0.) Although they are able to grow in extreme conditions, its growth rate is slow and the concentration of mature cells are low. The importance of G. oxydan is its ability to incompletely oxidize carbon substrates such as D-sorbitol, glycerol, D-fructose, and D-glucose for the use in biotechnological instruments.
Describe the size and content of the genome. How many chromosomes? Circular or linear? Other interesting features? What is known about its sequence? Does it have any plasmids? Are they important to the organism's lifestyle?
The genome of Gluconobacter oxydans tend to be small in size, ranging about 2240 to 3787kb (Verma et al., 1997). Shapes can be ellipsoidal or rod-shaped with dimensions of 0.5 to 0.8x0.9 to 4.2mm. The total number of genes is 2664, the total number of all DNA molecules is 6, and the total size of all the DNA molecules is 2922384bp. The circular chromosome has a size of 2.7Mb and a total of 2743 reading frames. It contains four plasmids with sizes of 26.6kb, 14.5kb, 13.2kb, and 2.7kb, and a megaplasmid with a size of 163kb. Its G+C content is 61%. G. oxydan is an aerobe which has oxygen as a terminal electron acceptor. The highest growth rate occur at temperatures between 25 to 30 degrees C and it cannot withstand high temperatures above 37 degrees C. G. oxydans are interesting because they cause apples and pears to rot and they thrive in environments with high concentrations of sugar.
Cell structure and metabolism
Describe any interesting features and/or cell structures; how it gains energy; what important molecules
G. oxydans has two membranes and no flagella and are thus non-motile. Since they are aerobes, they must oxidize to get their energy. One method involves oxidation of sugars, aliphatic and cyclic alcohols, and steroids to oxidation product. Another method is through the pentose phosphate pathway where phosphorylation occurs initially then proceeds with oxidation through the pathway. It is suggested that G. oxydans has an incomplete set of tricarboxylic acid cycle (TCA)enzymes because the carbon dioxide produced from glucose was from the pentose phosphate pathway. They possess properties for TCA because they are primarily responsible for the biosynthesis of glutamate, aspartate, and succinate. The main function of G. oxydans is their oxidative capabilites. It uses membrane-bound dehydrogenases to oxidize polyols into ketones and sugars into acids.
Describe any interactions with other organisms (included eukaryotes), contributions to the environment, effect on environment, etc.
Gluconobacter oxydans is often found in sugar rich areas. It can cause fruits to rot like rotten apples and pears.
How does this organism cause disease? Human, animal, plant hosts? Virulence factors, as well as patient symptoms.
Gluconobacter oxydans strains are non-pathogenic to humans or animals, but they cause bacterial rot to apples and pears turning them shades of brown.
Application to Biotechnology
Does this organism produce any useful compounds or enzymes? What are they and how are they used?
Gluconobacter oxydans is useful for a number of biotechnological applications.
Production of vitamin C, sorbitol, xylitol, and vinegar are aided with the addition of G. oxydans.
Biosensors using G. oxydans can be used to measure substrate concentration as a biosensor. Ehtanol in air, glycerol in fermentation media, and glucose in humans are just a few of the exciting applications currently being researched.
Enter summaries of the most recent research here--at least three required
[Sample reference] Takai, K., Sugai, A., Itoh, T., and Horikoshi, K. "Palaeococcus ferrophilus gen. nov., sp. nov., a barophilic, hyperthermophilic archaeon from a deep-sea hydrothermal vent chimney". International Journal of Systematic and Evolutionary Microbiology. 2000. Volume 50. p. 489-500.
Edited by student of Lynn S Cheung and Kit Pogliano
Prust, C., Hoffmeister, M., Liesegang, H., Wiezer, A., Fricke, W. F., Ehrenreich, A., Gottschalk, G. and Deppenmeier, U. (2005) Complete genome sequence of the acetic acid bacterium Gluconobacter oxydans. Nature Biotechnol. 23(2): 195-200 (abstract).
Gupta A, Singh VK, Qazi GN, Kumar A. Gluconobacter oxydans:its biotechnological applications. J Mol Micrcobiol Biotechnol. 2001 Jul.
Sue Macauley, Brian McNeil, and Linda M. Harvey. 'The Genus Gluconobacter and Its Applications in Biotechnology'. Critical Reviews in Biotechnology, 21:1, 1-25.
http://cmr.tigr.org/tigr-scripts/CMR/GenomePage.cgi?org=ntgo01 'Gluconobacter oxydans 621H Genome page', Comprehensive Microbial Resource