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__NOTOC__
<center>[[Image:Microbialbiorealm_banner.jpg|center]]</center>
<center>'''<h2>A Microbial Diversity Resource</h2>'''</center>
----
New contributions are welcome. Students, researchers, and others with knowledge and interest in microbiology are welcome to compose and edit pages.  To become an editor, please request a [[Contact MicrobeWiki|free account.]]<br><br>
'''Educators:''' You may assign MicrobeWiki page creation and editing as projects for your students.  We create a [[List of class template pages | template page]] for your assignment, which you may edit to meet your needs.  See for example the pages created by the following classes:
{{class list}}
Your students receive individual passwords.  Assessment and grading are up to you; after your class is over, we review pages for our standards.  Students of all levels, from first-year to graduate students, have contributed pages to our site.<br><br>
'''Managing Editor<br>
[mailto:barichd@kenyon.edu '''Daniel Barich '05''']<br>
'''Advisor:''' [http://biology.kenyon.edu/slonc/slonc.htm Joan Slonczewski], [http://biology.kenyon.edu/welcome.htm Biology Dept], [http://www.kenyon.edu Kenyon College].<br />
'''Copyright notice.''' Readers may view, browse, and/or download material for noncommercial personal purposes. Please credit our site for use. Materials on our site obtained with permission from other sources require permission from those sources for further reproduction.
'''Disclaimer.''' Information on this site is provided solely for educational purposes. Medical questions should be referred to a physician.
----
<center>
<h2>'''<font color="#55075D">Microbial Phylogeny</font><br /><br />'''</h2>
The [[Three Domains of Life|'''three Domains of Life''']] each have defining characteristics that are both separate and similar.<br>
Within each Domain these ranks are shown: '''<font color="#55075D">Division, Order, Genus</font>. '''Links provide full taxonomy and description.  See also [[Taxonomy Index]].'''
{| width="750" border="2" cellpadding="5"
| bgcolor="#FFCCFF" align="center" valign="TOP" |
<font size="+3">'''Bacteria'''</font>
| bgcolor="#CCCCFF" align="CENTER" valign="TOP" |
<font size="+3">'''Archaea'''</font>
| bgcolor="#FFFFCC" align="CENTER" valign="TOP" |
<font size="+3">'''Eukarya'''</font>
|-
| width="33%" height="3527" bgcolor="#FFCCFF" align="left" valign="TOP" |
<font size="3">'''Acidobacteria''' </font>
* '''Acidobacteriaceae'''
** '''''[[Candidatus Chloracidobacterium]]'''''
<font size="3">'''Actinobacteria''' </font>
* '''Actinomycetales'''
** '''''[[Arthrobacter]]'''''
** '''''[[Corynebacterium]]'''''
** '''''[[Frankia]]'''''
** '''''[[Micrococcus]]'''''
** '''''[[Mycobacterium]]'''''
** '''''[[Propionibacterium]]'''''
** '''''[[Streptomyces]]'''''
* '''Bifidobacteriales'''
** '''''[[Bifidobacterium]]'''''
<font size="3">'''Aquificae'''</font>
* '''Aquificales'''
** '''''[[Aquifex]]'''''
<font size="3">'''Bacteroidetes/Chlorobi group'''</font>
* '''Bacteroidales'''
** '''''[[Bacteroides]]'''''
** '''''[[Porphyromonas]]'''''
* '''Chlorobiales'''
** '''''[[Chlorobium]]'''''
* '''Flavobacteriales'''
** '''''[[Flavobacterium]]'''''
<font size="3">'''Chlamydiae/Verrucomicrobia'''</font>
* '''Chlamydiales'''
** '''''[[Chlamydia]]'''''
* '''Verrucomicrobiales'''
** '''''[[Prosthecobacter]]'''''
** '''''[[Verrucomicrobium]]<br />'''''
<font size="3">'''Chloroflexi'''</font>
* '''Chlorflexales'''
** '''''[[Chloroflexus]]'''''
<font size="3">'''Cyanobacteria'''</font>
* '''Chloroplast'''
* '''Chroococcales'''
** '''''[[Chroococcus]]'''''
** '''''[[Merismopedia]]'''''
** '''''[[Synechococcus]]'''''<br />
* '''Nostocales'''
** '''''[[Anabaena]]'''''
** '''''[[Nostoc]]'''''
* '''Oscillatoriales'''
** '''''[[Spirulina]]'''''
** '''''[[Trichodesmium]]'''''
* '''Pleurocapsales'''
** '''''[[Pleurocapsa]]'''''
* '''Prochlorophytes'''
** '''''[[Prochlorococcus]]'''''
** '''''[[Prochloron]]'''''
<font size="3">'''Firmicutes (Gram positive)'''</font>
* '''Bacillales'''
** '''''[[Bacillus]]'''''
** '''''[[Listeria]]'''''
** '''''[[Staphylococcus]]'''''
* '''Clostridiales'''
** '''''[[Clostridium]]'''''
** '''''[[Dehalobacter]]'''''
** '''''[[Epulopiscium]]'''''
** '''''[[Ruminococcus]]<br />'''''
* '''Lactobacillales'''
** '''''[[Enterococcus]]'''''
** '''''[[Lactobacillus]]'''''
** '''''[[Streptococcus]]'''''
* '''Mollicutes'''
** '''''[[Erysipelothrix]]'''''
** '''''[[Mycoplasma]]'''''<br /><br />
<font size="3">'''Nitrospirae'''</font>
* '''Nitrospirales'''
** '''''[[Leptospirillum]]'''''
** '''''[[Nitrospira]]'''''
** '''''[[Thermodesulfobacterium]]'''''
<font size="3">'''Planctomycetes'''</font>
* '''Planctomycetales'''
** '''''[[Gemmata]]'''''
** '''''[[Pirellula]]'''''
** '''''[[Planctomyces]]''<br />'''
<font size="3">'''[[Proteobacteria]] (Alpha)'''</font>
* '''Caulobacterales'''
** '''''[[Caulobacter]]'''''
* '''Rhizobiales'''
** '''''[[Agrobacterium]]'''''
** '''''[[Bradyrhizobium]]'''''
** '''''[[Brucella]]'''''
** '''''[[Methylobacterium]]'''''
** '''''[[Prosthecomicrobium]]'''''
** '''''[[Rhizobium]]'''''
** '''''[[Rhodopseudomonas]]'''''
** '''''[[Sinorhizobium]]'''''
* '''Rhodobacterales'''
** '''''[[Rhodobacter]]'''''
** '''''[[Roseobacter]]'''''
* '''Rhodospirales'''
** '''''[[Acetobacter]]'''''
** '''''[[Rhodospirillum]]'''''
* '''Rickettsiales'''
** '''''[[Rickettsia]]'''''
** '''''[[Rickettsia conorii]]'''''
** '''[[Mitochondria]]'''
** '''''[[Wolbachia]]'''''<br />
* '''Sphingomonadales'''
** '''''[[Erythrobacter]]'''''
** '''''[[Erythromicrobium]]'''''
** '''''[[Sphingomonas]]<br />'''''
<font size="3">'''[[Proteobacteria]] (Beta)'''</font>
* '''Burkholderiales'''
** '''''[[Alcaligenes]]'''''
** '''''[[Burkholderia]]'''''
** '''''[[Leptothrix]]'''''
** '''''[[Sphaerotilus]]'''''
* '''Hydrogenophilales'''
** '''''[[Thiobacillus]]'''''
* '''Neisseriales'''
** '''''[[Neisseria]]'''''
* '''Nitrosomonadales'''
** '''''[[Nitrosomonas]]'''''
** '''''[[Gallionella]]'''''
** '''''[[Spirillum]]'''''
* '''Rhodocyclales'''
** '''''[[Azoarcus]]<br />'''''
<font size="3">'''[[Proteobacteria]] (Gamma)'''</font>
* '''Aeromonadales'''
** '''''[[Aeromonas]]'''''
** '''''[[Succinomonas]]'''''
** '''''[[Succinivibrio]]'''''
** '''''[[Ruminobacter]]'''''
* '''Chromatiales'''
** '''''[[Nitrosococcus]]'''''
** '''''[[Thiocapsa]]<br />'''''
* '''Enterobacteriales'''
** '''''[[Enterobacter]]'''''
** '''''[[Escherichia]]'''''
** '''''[[Klebsiella]]'''''
** '''''[[Salmonella]]'''''
** '''''[[Shigella]]'''''
** '''''[[Wigglesworthia]]'''''
** '''''[[Yersinia]]<br />'''''
* '''Legionellales'''
** '''''[[Coxiella]]'''''
** '''''[[Legionella]]<br />'''''
* '''Oceanospirales'''
** '''''[[Halomonas]]'''''
* '''Pasteurellales'''
** '''''[[Pasteurella]]'''''
* '''Pseudomonadales'''
** '''''[[Acinetobacter]]'''''
** '''''[[Azotobacter]]'''''
** '''''[[Pseudomonas]]'''''
** '''''[[Psychrobacter]]<br />'''''
* '''Thiotrichales'''
** '''''[[Beggiatoa]]'''''
** '''''[[Thiomargarita]]'''''
* '''Vibrionales'''
** '''''[[Vibrio]]'''''
* '''Xanthomonadales'''
** '''''[[Xanthomonas]]'''''
<font size="3">'''[[Proteobacteria]] (Delta/Epsilon)'''</font>
* '''Bdellobvionales'''
** '''''[[Bdellovibrio]]'''''
* '''Campylobacterales'''
** '''''[[Campylobacter]]'''''
** '''''[[Helicobacter]]'''''
* '''Myxococcales'''
** '''''[[Myxococcus]]'''''
* '''Desulfobacterales'''
** '''''[[Desulfosarcina]]'''''
* '''Desulfuromonadales'''
** '''''[[Geobacter]]'''''
** '''''[[Desulfuromonas]]''''' <br />
<font size="3">'''Spirochaetes'''</font>
* '''Spirochaetales'''
** '''''[[Borrelia]]'''''
** '''''[[Leptospira]]'''''
** '''''[[Treponema]]'''''
<font size="3">'''Thermotogae'''</font>
* '''Thermotogales'''
** '''''Petrotoga'''''
** '''''[[Thermotoga]]''''' <br />
<font size="3">'''Thermus/Deinococcus group'''</font>
* '''Deinococcales'''
** '''''[[Deinococcus]]'''''
* '''Thermales'''
** '''''[[Thermus]]'''''
| width="34%" bgcolor="#CCCCFF" align="left" valign="TOP" |
<font size="3">'''Crenarchaeota'''</font>
* '''Caldisphaerales'''
** '''''[[Caldisphaera]]'''''
* '''Desulfurococcales'''
** '''''[[Acidilobus]]'''''
** '''''[[Aeropyrum]]'''''
** '''''[[Desulfurococcus]]'''''
** '''''[[Hyperthermus]]'''''
** '''''[[Pyrodictium]]'''''
** '''''[[Ignicoccus]]'''''
** '''''[[Thermosphaera]]'''''
* '''Sulfolobales'''
** '''''[[Sulfolobus]]'''''
** '''''[[Sulfurisphaera]]'''''
* '''Thermoproteales'''
<font size="3">'''Euryarchaeota'''</font>
* '''Archaeoglobales'''
** '''''[[Archaeoglobus]]'''''
* '''Haloarchaea (Halobacteriales)'''
** '''''[[Haloarcula]]'''''
** '''''[[Halobacterium]]'''''
** '''''[[Halococcus]]'''''
** '''''[[Haloferax]]'''''
** '''''[[Haloquadra]]'''''
** '''''[[Halorhabdus]]'''''
** '''''[[Natronococcus]]'''''
** '''''[[Natronomonas]]'''''
* '''Methanobacteriales'''
** '''''[[Methanothermobacter]]'''''
** '''''[[Methanosphaera]]'''''
* '''Methanococcales'''
** '''''[[Methanococcus]]'''''
** '''''[[Methanoculleus]]'''''
* '''Methanomicrobiales'''
** '''''[[Methanofollis]]'''''
* '''Methanosarcinales'''
** '''''[[Methanosarcina]]'''''
* '''Methanopyrales'''
** '''''[[Methanopyrus]]'''''
* '''Thermococcales'''
** '''''[[Pyrococcus]]'''''
** '''''[[Thermococcus]]'''''
* '''Thermoplasmatales'''
** '''''[[Ferroplasma]]'''''
** '''''[[Picrophilus]]'''''
** '''''[[Thermoplasma]]'''''
* '''Thermoproteales'''
** '''''[[Pyrobaculum]]'''''
<font size="3">'''Korarchaeota<br />'''</font>
'''<font size="3">Nanoarchaeota</font>'''
* '''''[[Nanoarchaeum]]'''''
| width="33%" bgcolor="#FFFFCC" align="left" valign="TOP" |
<font size="3">'''Opisthokonta'''</font>
* '''[[Metazoa|Metazoa (multicellular animals)]]'''
* '''[[Choanoflagellata]]'''
* '''Fungi (Eumycota, true fungi)'''
** '''[[Ascomycota]]'''
*** '''''[[Aspergillus]]'''''
*** '''''[[Cladosporium]]'''''
*** '''''[[Magnaporthe]]'''''
*** '''''[[Morchella]]'''''
*** '''''[[Neurospora]]'''''
*** '''''[[Penecillium|Penicillium]]'''''
*** '''''[[Saccharomyces]]'''''
** '''[[Basidiomycota]]'''
*** '''''[[Cryptococcus]]'''''
*** '''''[[Ustilago]]'''''
** '''[[Chytridiomycota]]'''
** '''[[Microsporidia]]'''
** '''[[Zygomycota]]'''
<font size="3">'''Viridiplantae (algae & plant)'''</font>
* '''Multicellular Plants'''
* '''[[Charophyta]]'''
* '''[[Chlorophyta]]'''
* '''[[Rhodophyta]]'''
<font size="3">'''Amebozoa'''</font>
* '''[[Ameba|Amebas]]'''
* '''[[Pelobionta]]'''
* '''Myxomycota (slime molds)'''
** '''[[Dictiostelida|Dictyostelida]]'''
** '''[[Myxogastria|Myxogastria (myxomycetes)]]'''
** '''[[Protostelida]]'''
<font size="3">'''Cercozoa (shelled amebas)'''</font>
* '''[[Foraminifera]]'''
* '''[[Radiolaria]]'''
* '''[[Euglyphids]]'''
<font size="3">'''Alveolata'''</font> '''(have cortical alveoli)'''
* '''[[Ciliophora]]'''
** '''''[[Didinium]]'''''
** '''''[[Paramecium]]'''''
** '''''[[Stentor]]'''''
** '''''[[Suctoria]]'''''
** '''''[[Vorticella]]'''''
* '''[[Dinoflagellata]]'''
** '''''[[Alexandrium]]'''''
** '''''[[Ceratium]]'''''
** '''''[[Pfiesteria]]'''''
** '''[[Zooxanthellae]]'''
* '''[[Apicomplex|Apicomplexa]]'''
** '''Piroplasmida'''
*** '''''[[Babesia]]'''''
** '''Haemosporida'''
*** '''''[[Leukocytozoon]]'''''
*** '''''[[Plasmodium]]'''''
** '''Coccidia'''
*** '''''[[Cryptosporidium]]'''''
*** '''''[[Cyclospora]]'''''
*** '''''[[Sarcocystis]]'''''
<font size="3">'''Marine flagellates (other)'''</font>
<font size="3">'''Heterokonta (Stramenopiles)'''</font>
* '''[[Bicosoecids]]'''
* '''[[Chrysophyta]]'''
* '''[[Actinophrydae]]'''
* '''[[Bacillariophyta]] (diatoms)'''
* '''[[Chrysophyceae]]'''
* '''[[Xanthophyceae]]'''
* '''[[Oomycota]]'''
* '''[[Labyrinthula|Labyrinthulids]]'''
* '''[[Opalinids]]'''
* '''[[Phaeophyceae]] (kelp)'''
* '''Haptophytes'''
** '''''[[Emiliana|Emiliania]]'''''
<font size="3">'''Discicristata'''</font>
* '''[[Acrasids]]'''
* '''[[Euglenozoa]]'''
* '''Trypanosoma'''
** '''''[[Trypanosoma]]'''''
** '''''[[Leishmania]]'''''
<font size="3">'''Excavata'''</font>
* '''[[Diplomonada|Diplomonads]]'''
** '''[[Giardia]]'''
* '''[[Oxymonads]]'''
* '''[[Parabasalia|Parabasalids]]'''
** '''''[[Mixotricha]]'''''
** '''''[[Parabasalia|Trichomonas]]'''''
* '''[[Retortamonads]]'''
<font size="3">'''Emerging Eukaryotes'''</font>
* '''[[Nano- and Picoeukaryotes]]'''
<br />
|}

Latest revision as of 16:28, 6 November 2015

This page and all pages listed below are curated pages. Report corrections to Microbewiki.


Microbialbiorealm banner.jpg

A Microbial Diversity Resource

New contributions are welcome. Students, researchers, and others with knowledge and interest in microbiology are welcome to compose and edit pages. To become an editor, please request a free account.

Educators: You may assign MicrobeWiki page creation and editing as projects for your students. We create a template page for your assignment, which you may edit to meet your needs. See for example the pages created by the following classes:

Your students receive individual passwords. Assessment and grading are up to you; after your class is over, we review pages for our standards. Students of all levels, from first-year to graduate students, have contributed pages to our site.


Managing Editor
 Daniel Barich '05
Advisor: Joan Slonczewski, Biology Dept, Kenyon College.


Copyright notice. Readers may view, browse, and/or download material for noncommercial personal purposes. Please credit our site for use. Materials on our site obtained with permission from other sources require permission from those sources for further reproduction.

Disclaimer. Information on this site is provided solely for educational purposes. Medical questions should be referred to a physician.


Microbial Phylogeny

The three Domains of Life each have defining characteristics that are both separate and similar.
Within each Domain these ranks are shown: Division, Order, Genus. Links provide full taxonomy and description. See also Taxonomy Index.

Bacteria

Archaea

Eukarya

Acidobacteria

Actinobacteria

Aquificae

Bacteroidetes/Chlorobi group

Chlamydiae/Verrucomicrobia

Chloroflexi

Cyanobacteria

Firmicutes (Gram positive)

Nitrospirae

Planctomycetes

Proteobacteria (Alpha)

Proteobacteria (Beta)

Proteobacteria (Gamma)

Proteobacteria (Delta/Epsilon)

Spirochaetes

Thermotogae

Thermus/Deinococcus group

Crenarchaeota

Euryarchaeota

Korarchaeota

Nanoarchaeota

Opisthokonta

Viridiplantae (algae & plant)

Amebozoa

Cercozoa (shelled amebas)

Alveolata (have cortical alveoli)


Marine flagellates (other)


Heterokonta (Stramenopiles)

Discicristata

Excavata

Emerging Eukaryotes


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