Photobacterium leiognathi: Difference between revisions

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<center>
 
<font color="#6300C6">
<font color="#6300C6"><font size="+4">'''The Microbial Biorealm'''</font></font>
= The Microbial Biorealm =
</font>


</center><br /><center>[[Image:phylo_domains_home.gif]]</center><center>
</center><br /><center>[[Image:phylo_domains_home.gif]]</center><center>


'''<font color="#000000"><font size="+3">A Microbial Diversity Resource</font></font>'''<br /><br /><br />'''</center>
'''<font color="#000000"><font size="+3">A Microbial Diversity Resource</font></font>'''<br />'''</center>
<font color="#000000"><font size="3">'''Student Authors:''' Ryo Tashiro '09, Molly Schlemmer '08, Shrochis Karki '09, Allison Whipple '06, Zeva Levine ([http://www.beloit.edu/ Beloit]), Laura Damon-Moore ([http://www.beloit.edu/ Beloit]), Ariel Kahrl ([http://www.oberlin.edu/ Oberlin]), Hannah Sacks '08, Michael Stulberg '05,  Casey M. Smith '06, and Shana Scogin '07<br />
<font color="#000000"><font size="3">'''Student Authors:''' Ryo Tashiro '09, Molly Schlemmer '08, Shrochis Karki '09, Allison Whipple '06, Zeva Levine ([http://www.beloit.edu/ Beloit]), Laura Damon-Moore ([http://www.beloit.edu/ Beloit]), Ariel Kahrl ([http://www.oberlin.edu/ Oberlin]), Hannah Sacks '08, Michael Stulberg '05,  Casey M. Smith '06, and Shana Scogin '07<br />
'''Advisor:''' [http://biology.kenyon.edu/slonc/slonc.htm Joan Slonczewski], [http://biology.kenyon.edu/welcome.htm Biology Dept].<br />  
'''Advisor:''' [http://biology.kenyon.edu/slonc/slonc.htm Joan Slonczewski], [http://biology.kenyon.edu/welcome.htm Biology Dept].<br />  
'''Funding:''' [http://biology.kenyon.edu/HHMI/index.htm HHMI] awards to Kenyon College, 2000, 2004'''
'''Funding:''' [http://biology.kenyon.edu/HHMI/index.htm HHMI] awards to Kenyon College, 2000, 2004'''


'''Review:''' [http://biology.kenyon.edu/Microbial_Biorealm/MicroBiorealm_Summer2005.pdf Focus on Microbiology Education<br /><font size="2">Jennifer L. Taylor, authors. Licensed for use, '''''[http://www.microbelibrary.org/ ASM MicrobeLibrary]''''' </font>
'''Review:''' [http://biology.kenyon.edu/Microbial_Biorealm/MicroBiorealm_Summer2005.pdf Focus on Microbiology Education], Jennifer L. Taylor, authors. Licensed for use, [http://www.microbelibrary.org/ ASM MicrobeLibrary]</font>


<font size="3">'''<font color="#000000">Recommended Sites:</font>'''<br />'''<font color="#000000">[http://www.ncbi.nlm.nih.gov/Taxonomy/taxonomyhome.html/ NCBI Taxonomy]</font>'''<br />'''[http://www.ncbi.nlm.nih.gov/genomes/lproks.cgi NCBI Microbial Genomes<br />]'''</font><font size="3">'''[http://141.150.157.117:8080/prokPUB/index.htm The Prokaryotes: An Evolving Electronic Resource]'''<br />'''<font color="#000000">[http://www.bacterio.cict.fr/ LBSN List of Bacterial Names<br />][http://www.mbio.ncsu.edu/JWB/MB409/home.html MB409 Microbial Diversity]</font>'''<br />'''<font color="#000000">[http://www.scienceonline.org/ Science]</font>'''</font><font size="3">'''<font color="#000000"> <font color="#FFFFFF">-</font> [http://www.pnas.org/search.dtl PNAS]</font>''' <font color="#FFFFFF">-</font> '''<font color="#000000">[http://www.journals.asm.org/search.dtl ASM Journals]</font>''' <font color="#FFFFFF">-</font> '''<font color="#000000">[http://www.journals.asm.org/search.dtl Nature]</font>'''</font></center>
'''Recommended Sites:''' [http://www.ncbi.nlm.nih.gov/Taxonomy/taxonomyhome.html/ NCBI Taxonomy]</font>, [http://www.ncbi.nlm.nih.gov/genomes/lproks.cgi NCBI Microbial Genomes], [http://141.150.157.117:8080/prokPUB/index.htm The Prokaryotes: An Evolving Electronic Resource], [http://www.bacterio.cict.fr/ LBSN List of Bacterial Names], [http://www.mbio.ncsu.edu/JWB/MB409/home.html MB409 Microbial Diversity]</font>, [http://www.scienceonline.org/ Science], <font [http://www.pnas.org/search.dtl PNAS], [http://www.journals.asm.org/search.dtl ASM Journals], [http://www.journals.asm.org/search.dtl Nature]</center>


<font size="2">'''Copyright notice.''' Readers may view, browse, and/or download material for noncommercial personal purposes. Please credit our site for use. Materials on our site obtained with permission from other sources require permission from those sources for further reproduction. </font>
<font size="2">'''Copyright notice.''' Readers may view, browse, and/or download material for noncommercial personal purposes. Please credit our site for use. Materials on our site obtained with permission from other sources require permission from those sources for further reproduction. </font>
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<font size="2">'''Disclaimer.''' Information on this site is provided solely for educational purposes. Medical questions should be referred to a physician.</font>
<font size="2">'''Disclaimer.''' Information on this site is provided solely for educational purposes. Medical questions should be referred to a physician.</font>


<center><font size="+3">'''<font color="#660099">Microbial Descriptions and Taxonomy</font><br />'''</font>
<center><font size="+3">'''<font color="#660099">Microbial Phylogeny</font><br />'''</font>


<font size="+1">Within each Domain these ranks are shown:</font>'''<font size="+1"><br /><font color="#660099">Division, Order, Genus</font><br /></font>'''
<font size="+1">Within each Domain these ranks are shown:</font>'''<font size="+1"><br /><font color="#660099">Division, Order, Genus</font><br /></font>'''


<font size="+1">Links provide full taxonomy and description.</font>'''<font size="+1"></center><br />
<font size="+1">Links provide full taxonomy and description.</font>'''<font size="+1"><br />
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Revision as of 19:23, 6 June 2006

The Microbial Biorealm


Phylo domains home.gif
A Microbial Diversity Resource

Student Authors: Ryo Tashiro '09, Molly Schlemmer '08, Shrochis Karki '09, Allison Whipple '06, Zeva Levine (Beloit), Laura Damon-Moore (Beloit), Ariel Kahrl (Oberlin), Hannah Sacks '08, Michael Stulberg '05, Casey M. Smith '06, and Shana Scogin '07
Advisor: Joan Slonczewski, Biology Dept.
Funding: HHMI awards to Kenyon College, 2000, 2004

Review: Focus on Microbiology Education, Jennifer L. Taylor, authors. Licensed for use, ASM MicrobeLibrary

Recommended Sites: NCBI Taxonomy, NCBI Microbial Genomes, The Prokaryotes: An Evolving Electronic Resource, LBSN List of Bacterial Names, MB409 Microbial Diversity, Science, <font PNAS, ASM Journals, Nature

Copyright notice. Readers may view, browse, and/or download material for noncommercial personal purposes. Please credit our site for use. Materials on our site obtained with permission from other sources require permission from those sources for further reproduction.

Disclaimer. Information on this site is provided solely for educational purposes. Medical questions should be referred to a physician.

Microbial Phylogeny

Within each Domain these ranks are shown:
Division, Order, Genus

Links provide full taxonomy and description.

Bacteria

Archaea

Eukarya

  • Actinobacteria
    • Actinomycetales
      • Arthrobacter
      • Corynebacterium
      • Frankia
      • Micrococcus
      • Mycobacterium
      • Propionibacterium
      • Streptomyces
    • Bifidobacteriales
      • Bifidobacterium
  • Aquificae
    • Aquificales
      • Aquifex
  • Bacteroidetes/Chlorobi group
    • Bacteroidales
      • Bacteroides
      • Porphyromonas
    • Chlorobiales
      • Chlorobium
    • Flavobacteriales
      • Flavobacterium
  • Chlamydiae/Verrucomicrobia
    • Chlamydiales
      • Chlamydia
    • Verrucomicrobiales
      • Prosthecobacter
      • Verrucomicrobium
  • Chloroflexi
    • Chlorflexales
      • Chloroflexus
  • Cyanobacteria
    • Chloroplast
    • Chroococcales
      • Chroococcus
      • Merismopedia
      • Synechococcus
    • Nostocales
      • Anabaena
      • Nostoc
    • Oscillatoriales
      • Spirulina
      • Trichodesmium
    • Pleurocapsales
      • Pleurocapsa
    • Prochlorophytes
      • Prochlorococcus
      • Prochloron
  • Firmicutes (Gram positive)
    • Bacillales
      • Bacillus
      • Listeria
      • Staphylococcus
    • Clostridiales
      • Clostridium
      • Dehalobacter
      • Epulopiscium
      • Ruminococcus
    • Lactobacillales
      • Enterococcus
      • Lactobacillus
      • Streptococcus
    • Mollicutes
      • Mycoplasma

  • Nitrospirae
    • Nitrospirales
      • Leptospirillum
      • Nitrospira
      • Thermodesulfo-bacterium
  • Planctomycetes
    • Planctomycetales
      • Gemmata
      • Pirellula
      • Planctomyces
  • Proteobacteria (Alpha)
    • Caulobacterales
      • Caulobacter
    • Rhizobiales
      • Agrobacterium
      • Bradyrhizobium
      • Brucella
      • Methylobacterium
      • Prosthecomicrobium
      • Rhizobium
      • Rhodopseudomonas
      • Sinorhizobium
    • Rhodobacterales
      • Rhodobacter
      • Roseobacter
    • Rhodospirales
      • Acetobacter
      • Rhodospirillum
    • Rickettsiales
      • Rickettsia
      • Mitochondria
      • Wolbachia
    • Sphingomonadales
      • Erythrobacter
      • Erythromicrobium
      • Sphingomonas
  • Proteobacteria (Beta)
    • Burkholderiales
      • Alcaligenes
      • Burkholderia
      • Leptothrix
      • Sphaerotilus
    • Hydrogenophilales
      • Thiobacillus
    • Neisseriales
      • Neisseria
    • Nitrosomonadales
      • Nitrosomonas
      • Gallionella
      • Spirillum
    • 'Rhodocyclales'
      • Azoarcus
  • Proteobacteria (Gamma)
    • Aeromonadales
      • Aeromonas
      • Succinomonas
      • Succinivibrio
      • Ruminobacter
    • Chromatiales
      • Nitrosococcus
      • Thiocapsa
    • Enterobacteriales
      • Enterobacter
      • Escherichia
      • Klebsiella
      • Salmonella
      • Wigglesworthia
      • Yersinia
    • Legionellales
      • Coxiella
      • Legionella
    • Oceanospirales
      • Halomonas
    • Pasteurellales
      • Pasteurella
    • Pseudomonadales
      • Acinetobacter
      • Azotobacter
      • Pseudomonas
      • Psychrobacter
    • Thiotrichales
      • Beggiatoa
      • Thiomargarita
    • Vibrionales
      • Vibrio
    • Xanthomonadales
      • Xanthomonas
  • Proteobacteria (Delta/Epsilon)
    • Campylobacterales
      • Campylobacter
      • Helicobacter
    • Myxococcales
      • Myxococcus
    • Desulfobacterales
      • '''Desulfosarcina'''
    • Desulfuromonadales
      • Geobacter
      • Desulfuromonas
  • Spirochaetes
    • Spirochaetales
      • Borrelia
      • Leptospira
      • Treponema
  • Thermotogae
    • Thermotogales
      • Petrotoga
      • Thermotoga
  • Thermus/Deinococcus group
    • Deinococcales
      • Deinococcus
    • Thermales
      • Thermus
  • Crenarchaeota
    • Desulfurococcales
      • Aeropyrum
      • Desulfurococcus
      • Pyrodictium
      • Ignicoccus
      • Thermosphaera
    • Sulfolobales
      • Sulfolobus
    • Thermoproteales
      • Thermoproteus
  • Euryarchaeota
    • Archaeoglobales
      • Archaeoglobus
    • Haloarchaea (Halobacteriales)
      • Haloarcula
      • Halobacterium
      • Halococcus
      • Haloferax
      • Natronococcus
      • Natronomonas
    • Methanobacteriales
      • Methanothermobacter
      • Methanosphaera
    • Methanococcales
      • Methanococcus
      • Methanoculleus
    • Methanosarcinales
      • Methanosarcina
    • Methanopyrales
      • Methanopyrus
    • Thermococcales
      • Pyrococcus
      • Thermococcus
    • Thermoplasmatales
      • Ferroplasma
      • Picrophilus
      • Thermoplasma
    • Thermoproteales
      • Pyrobaculum
  • Korarchaeota
  • Nanoarchaeota
      • Nanoarchaeum

Opisthokonta

  • Metazoa (multicellular animals)
  • Choanoflagellata
  • Fungi (Eumycota, true fungi)
    • Ascomycota
      • Aspergillus
      • Magnaporthe
      • Morchella
      • Neurospora
      • Penicillium
      • Saccharomyces
    • Basidiomycota
      • Cryptococcus
    • Chytridiomycota
    • Microsporidia
    • Zygomycota

Viridiplantae (algae & plant)

  • Multicellular Plants
  • Charophyta
  • Chlorophyta
  • Rhodophyta

Amebozoa

  • Amebas
  • Pelobionta
  • Myxomycota (slime molds)
    • Dictyosteliida
    • Myxogastria (myxomycetes)
    • Protostelida

'Cercozoa (shelled amebas)'

  • 'Foraminifera'
  • 'Radiolaria'
  • 'Euglyphids'

Alveolata (have cortical alveoli)

  • Ciliophora
    • Didinium
    • Paramecium
    • Stentor
    • Suctoria
    • Vorticella
  • Dinoflagellata
    • Alexandrium
    • Ceratium
    • Pfiesteria
    • Zooxanthellae
  • Apicomplexa
    • Piroplasmida
      • Babesia
    • Haemosporida
      • Leukocytozoon
      • Plasmodium
    • Coccidia
      • Cryptosporidium
      • Cyclospora
      • Sarcocystis

Marine flagellates (other)Heterokonta (Stramenopiles)

  • Bicosoecids
  • ' Chrysophyta'
  • Actinophrydae
  • Bacillariophyta (diatoms)
  • Chrysophyceae
  • Xanthophyceae
  • Oomycota
  • Labyrinthulids
  • Opalinids
  • Phaeophyceae (kelp)
  • Haptophytes
    • Emiliania

Discicristata

  • Acrasids
  • Euglenozoa
  • Trypanosoma
    • Trypanosoma
    • Leishmania

Excavata

  • Diplomonads
    • Giardia
  • Oxymonads
  • Parabasalids
    • Mixotricha
    • Trichomonas
  • Retortamonads

Emerging Eukaryotes

  • Nano- and Picoeukaryotes