Photobacterium leiognathi: Difference between revisions

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= The Microbial Biorealm =
= The Microbial Biorealm =
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</center><br /><center>[[Image:phylo_domains_home.gif]]</center><center>
<br />[[Image:phylo_domains_home.gif]]
 
'''<font color="#000000"><font size="+3">A Microbial Diversity Resource</font></font>'''<br />


'''<font color="#000000"><font size="+3">A Microbial Diversity Resource</font></font>'''<br />'''</center>
<font color="#000000"><font size="3">'''Student Authors:''' Ryo Tashiro '09, Molly Schlemmer '08, Shrochis Karki '09, Allison Whipple '06, Zeva Levine ([http://www.beloit.edu/ Beloit]), Laura Damon-Moore ([http://www.beloit.edu/ Beloit]), Ariel Kahrl ([http://www.oberlin.edu/ Oberlin]), Hannah Sacks '08, Michael Stulberg '05,  Casey M. Smith '06, and Shana Scogin '07<br />
<font color="#000000"><font size="3">'''Student Authors:''' Ryo Tashiro '09, Molly Schlemmer '08, Shrochis Karki '09, Allison Whipple '06, Zeva Levine ([http://www.beloit.edu/ Beloit]), Laura Damon-Moore ([http://www.beloit.edu/ Beloit]), Ariel Kahrl ([http://www.oberlin.edu/ Oberlin]), Hannah Sacks '08, Michael Stulberg '05,  Casey M. Smith '06, and Shana Scogin '07<br />
'''Advisor:''' [http://biology.kenyon.edu/slonc/slonc.htm Joan Slonczewski], [http://biology.kenyon.edu/welcome.htm Biology Dept].<br />  
'''Advisor:''' [http://biology.kenyon.edu/slonc/slonc.htm Joan Slonczewski], [http://biology.kenyon.edu/welcome.htm Biology Dept].<br />  
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'''Review:''' [http://biology.kenyon.edu/Microbial_Biorealm/MicroBiorealm_Summer2005.pdf Focus on Microbiology Education], Jennifer L. Taylor, authors. Licensed for use, [http://www.microbelibrary.org/ ASM MicrobeLibrary]</font>
'''Review:''' [http://biology.kenyon.edu/Microbial_Biorealm/MicroBiorealm_Summer2005.pdf Focus on Microbiology Education], Jennifer L. Taylor, authors. Licensed for use, [http://www.microbelibrary.org/ ASM MicrobeLibrary]</font>


'''Recommended Sites:''' [http://www.ncbi.nlm.nih.gov/Taxonomy/taxonomyhome.html/ NCBI Taxonomy]</font>, [http://www.ncbi.nlm.nih.gov/genomes/lproks.cgi NCBI Microbial Genomes], [http://141.150.157.117:8080/prokPUB/index.htm The Prokaryotes: An Evolving Electronic Resource], [http://www.bacterio.cict.fr/ LBSN List of Bacterial Names], [http://www.mbio.ncsu.edu/JWB/MB409/home.html MB409 Microbial Diversity]</font>, [http://www.scienceonline.org/ Science], <font  [http://www.pnas.org/search.dtl PNAS], [http://www.journals.asm.org/search.dtl ASM Journals], [http://www.journals.asm.org/search.dtl Nature]</center>
'''Recommended Sites:''' [http://www.ncbi.nlm.nih.gov/Taxonomy/taxonomyhome.html/ NCBI Taxonomy]</font>, [http://www.ncbi.nlm.nih.gov/genomes/lproks.cgi NCBI Microbial Genomes], [http://141.150.157.117:8080/prokPUB/index.htm The Prokaryotes: An Evolving Electronic Resource], [http://www.bacterio.cict.fr/ LBSN List of Bacterial Names], [http://www.mbio.ncsu.edu/JWB/MB409/home.html MB409 Microbial Diversity]</font>, [http://www.scienceonline.org/ Science], <font  [http://www.pnas.org/search.dtl PNAS], [http://www.journals.asm.org/search.dtl ASM Journals], [http://www.journals.asm.org/search.dtl Nature]


<font size="2">'''Copyright notice.''' Readers may view, browse, and/or download material for noncommercial personal purposes. Please credit our site for use. Materials on our site obtained with permission from other sources require permission from those sources for further reproduction. </font>
<font size="2">'''Copyright notice.''' Readers may view, browse, and/or download material for noncommercial personal purposes. Please credit our site for use. Materials on our site obtained with permission from other sources require permission from those sources for further reproduction. </font>

Revision as of 19:30, 6 June 2006

The Microbial Biorealm



Phylo domains home.gif

A Microbial Diversity Resource

Student Authors: Ryo Tashiro '09, Molly Schlemmer '08, Shrochis Karki '09, Allison Whipple '06, Zeva Levine (Beloit), Laura Damon-Moore (Beloit), Ariel Kahrl (Oberlin), Hannah Sacks '08, Michael Stulberg '05, Casey M. Smith '06, and Shana Scogin '07
Advisor: Joan Slonczewski, Biology Dept.
Funding: HHMI awards to Kenyon College, 2000, 2004

Review: Focus on Microbiology Education, Jennifer L. Taylor, authors. Licensed for use, ASM MicrobeLibrary

Recommended Sites: NCBI Taxonomy, NCBI Microbial Genomes, The Prokaryotes: An Evolving Electronic Resource, LBSN List of Bacterial Names, MB409 Microbial Diversity, Science, <font PNAS, ASM Journals, Nature

Copyright notice. Readers may view, browse, and/or download material for noncommercial personal purposes. Please credit our site for use. Materials on our site obtained with permission from other sources require permission from those sources for further reproduction.

Disclaimer. Information on this site is provided solely for educational purposes. Medical questions should be referred to a physician.

Microbial Phylogeny

Within each Domain these ranks are shown:
Division, Order, Genus

Links provide full taxonomy and description.

Bacteria

Archaea

Eukarya

  • Actinobacteria
    • Actinomycetales
      • Arthrobacter
      • Corynebacterium
      • Frankia
      • Micrococcus
      • Mycobacterium
      • Propionibacterium
      • Streptomyces
    • Bifidobacteriales
      • Bifidobacterium
  • Aquificae
    • Aquificales
      • Aquifex
  • Bacteroidetes/Chlorobi group
    • Bacteroidales
      • Bacteroides
      • Porphyromonas
    • Chlorobiales
      • Chlorobium
    • Flavobacteriales
      • Flavobacterium
  • Chlamydiae/Verrucomicrobia
    • Chlamydiales
      • Chlamydia
    • Verrucomicrobiales
      • Prosthecobacter
      • Verrucomicrobium
  • Chloroflexi
    • Chlorflexales
      • Chloroflexus
  • Cyanobacteria
    • Chloroplast
    • Chroococcales
      • Chroococcus
      • Merismopedia
      • Synechococcus
    • Nostocales
      • Anabaena
      • Nostoc
    • Oscillatoriales
      • Spirulina
      • Trichodesmium
    • Pleurocapsales
      • Pleurocapsa
    • Prochlorophytes
      • Prochlorococcus
      • Prochloron
  • Firmicutes (Gram positive)
    • Bacillales
      • Bacillus
      • Listeria
      • Staphylococcus
    • Clostridiales
      • Clostridium
      • Dehalobacter
      • Epulopiscium
      • Ruminococcus
    • Lactobacillales
      • Enterococcus
      • Lactobacillus
      • Streptococcus
    • Mollicutes
      • Mycoplasma

  • Nitrospirae
    • Nitrospirales
      • Leptospirillum
      • Nitrospira
      • Thermodesulfo-bacterium
  • Planctomycetes
    • Planctomycetales
      • Gemmata
      • Pirellula
      • Planctomyces
  • Proteobacteria (Alpha)
    • Caulobacterales
      • Caulobacter
    • Rhizobiales
      • Agrobacterium
      • Bradyrhizobium
      • Brucella
      • Methylobacterium
      • Prosthecomicrobium
      • Rhizobium
      • Rhodopseudomonas
      • Sinorhizobium
    • Rhodobacterales
      • Rhodobacter
      • Roseobacter
    • Rhodospirales
      • Acetobacter
      • Rhodospirillum
    • Rickettsiales
      • Rickettsia
      • Mitochondria
      • Wolbachia
    • Sphingomonadales
      • Erythrobacter
      • Erythromicrobium
      • Sphingomonas
  • Proteobacteria (Beta)
    • Burkholderiales
      • Alcaligenes
      • Burkholderia
      • Leptothrix
      • Sphaerotilus
    • Hydrogenophilales
      • Thiobacillus
    • Neisseriales
      • Neisseria
    • Nitrosomonadales
      • Nitrosomonas
      • Gallionella
      • Spirillum
    • 'Rhodocyclales'
      • Azoarcus
  • Proteobacteria (Gamma)
    • Aeromonadales
      • Aeromonas
      • Succinomonas
      • Succinivibrio
      • Ruminobacter
    • Chromatiales
      • Nitrosococcus
      • Thiocapsa
    • Enterobacteriales
      • Enterobacter
      • Escherichia
      • Klebsiella
      • Salmonella
      • Wigglesworthia
      • Yersinia
    • Legionellales
      • Coxiella
      • Legionella
    • Oceanospirales
      • Halomonas
    • Pasteurellales
      • Pasteurella
    • Pseudomonadales
      • Acinetobacter
      • Azotobacter
      • Pseudomonas
      • Psychrobacter
    • Thiotrichales
      • Beggiatoa
      • Thiomargarita
    • Vibrionales
      • Vibrio
    • Xanthomonadales
      • Xanthomonas
  • Proteobacteria (Delta/Epsilon)
    • Campylobacterales
      • Campylobacter
      • Helicobacter
    • Myxococcales
      • Myxococcus
    • Desulfobacterales
      • '''Desulfosarcina'''
    • Desulfuromonadales
      • Geobacter
      • Desulfuromonas
  • Spirochaetes
    • Spirochaetales
      • Borrelia
      • Leptospira
      • Treponema
  • Thermotogae
    • Thermotogales
      • Petrotoga
      • Thermotoga
  • Thermus/Deinococcus group
    • Deinococcales
      • Deinococcus
    • Thermales
      • Thermus
  • Crenarchaeota
    • Desulfurococcales
      • Aeropyrum
      • Desulfurococcus
      • Pyrodictium
      • Ignicoccus
      • Thermosphaera
    • Sulfolobales
      • Sulfolobus
    • Thermoproteales
      • Thermoproteus
  • Euryarchaeota
    • Archaeoglobales
      • Archaeoglobus
    • Haloarchaea (Halobacteriales)
      • Haloarcula
      • Halobacterium
      • Halococcus
      • Haloferax
      • Natronococcus
      • Natronomonas
    • Methanobacteriales
      • Methanothermobacter
      • Methanosphaera
    • Methanococcales
      • Methanococcus
      • Methanoculleus
    • Methanosarcinales
      • Methanosarcina
    • Methanopyrales
      • Methanopyrus
    • Thermococcales
      • Pyrococcus
      • Thermococcus
    • Thermoplasmatales
      • Ferroplasma
      • Picrophilus
      • Thermoplasma
    • Thermoproteales
      • Pyrobaculum
  • Korarchaeota
  • Nanoarchaeota
      • Nanoarchaeum

Opisthokonta

  • Metazoa (multicellular animals)
  • Choanoflagellata
  • Fungi (Eumycota, true fungi)
    • Ascomycota
      • Aspergillus
      • Magnaporthe
      • Morchella
      • Neurospora
      • Penicillium
      • Saccharomyces
    • Basidiomycota
      • Cryptococcus
    • Chytridiomycota
    • Microsporidia
    • Zygomycota

Viridiplantae (algae & plant)

  • Multicellular Plants
  • Charophyta
  • Chlorophyta
  • Rhodophyta

Amebozoa

  • Amebas
  • Pelobionta
  • Myxomycota (slime molds)
    • Dictyosteliida
    • Myxogastria (myxomycetes)
    • Protostelida

'Cercozoa (shelled amebas)'

  • 'Foraminifera'
  • 'Radiolaria'
  • 'Euglyphids'

Alveolata (have cortical alveoli)

  • Ciliophora
    • Didinium
    • Paramecium
    • Stentor
    • Suctoria
    • Vorticella
  • Dinoflagellata
    • Alexandrium
    • Ceratium
    • Pfiesteria
    • Zooxanthellae
  • Apicomplexa
    • Piroplasmida
      • Babesia
    • Haemosporida
      • Leukocytozoon
      • Plasmodium
    • Coccidia
      • Cryptosporidium
      • Cyclospora
      • Sarcocystis

Marine flagellates (other)Heterokonta (Stramenopiles)

  • Bicosoecids
  • ' Chrysophyta'
  • Actinophrydae
  • Bacillariophyta (diatoms)
  • Chrysophyceae
  • Xanthophyceae
  • Oomycota
  • Labyrinthulids
  • Opalinids
  • Phaeophyceae (kelp)
  • Haptophytes
    • Emiliania

Discicristata

  • Acrasids
  • Euglenozoa
  • Trypanosoma
    • Trypanosoma
    • Leishmania

Excavata

  • Diplomonads
    • Giardia
  • Oxymonads
  • Parabasalids
    • Mixotricha
    • Trichomonas
  • Retortamonads

Emerging Eukaryotes

  • Nano- and Picoeukaryotes