Higher order taxa
Virus; Picornaviridae (Family); Rhinovirus
Human rhinovirus A (example)
Description and Significance
Rhinoviruses (RVs) are small (30 nm), nonenveloped viruses that contain a single-strand ribonucleic acid (RNA) genome within an icosahedral (20-sided) capsid. RV can be transmitted by aerosol or direct contact. The nasal mucosa is the primary site of onoculation, although the conjunctiva may also be involved, though to a lesser extent. The RV attaches itself to the respiratory epithelium and spreads locally. The optimum temperature for RV repolication is 33-35°C and so does not replicate efficiently at body temperature. This could be the major reason why RV replicates well in the nasal passages and upper trachebronchial tree but not so well in the lower respiratory tract.
RV is best known for causing the common cold. although it has also been implicated in causing bronchitis and is the virus seen most often in asthma attacks. The RV could very often be responsible for symptoms such as fever, cough and nagal congestions. It is important to come to terms with the fact that there is no direct medicine to cure the common cold. There is little or no cross-protection between serotypes, making it very difficult to make vaccines. Even antibiotics are not effective because they cannot destroy the RV. Hence, the best way to deal with RV is prevention. The virus seems to affect children first, and then there are many modes of transmission that range from aerosol to direct hand-to-hand contact. For now, the best cure seems to be to take plenty of fluids and over the counter medications such as nasal decongestants, antihistamines, and analgesics.
The genome of the rhinovirus consists of one s/s (+)sense RNA molecule of between 7.2kb (HRB14) to 8.5kb (FMDV). The genomic RNA is infectious. It is less infectious than intact particles but infectivity is increased if and when the RNA is introduced into cells by transfection. The RNA's untranslated region at the 5' end is 600-1200 bases long and is important in translation, virulence and possibly encapsidation while its' untranslated region at the 3' end is shorter, 50-100 bases, and is instrumental in (-) strand synthesis. The 5' UTR contains a 'clover-leaf' secondary structure known as the Internal Ribosome Entry Site (IRES) while the rest of the genome encodes a single 'polyprotein' of between 2100 to 2400 amino acids. Both ends of the genomes are modified: basic protein VPg is covalently attached at the 5' end and polyadentylation modifies the 3' end. While polyadenylic acid sequences are not genetically coded, there is a 'polyadenylation signal upstream of the 3' end as in eukaryotic mRNAs.
The capsid of the RV consists of a densely-packed icosahedral arrangement of 60 protomers, each consisting of 4 polypeptides, VP1, 2, 3 and 4 - all derived from cleavage of the original protomer VP0, with (pseudo) T=3 packing. The particle is 27-30nm in diameter, depending upon the type and degree of desiccation, while the lenght of the genome is about 2500nm when stretched out. Hence, the genome is tightly packed into the capsid with polyamines to counteract the negative charges on the phosphate groups.
Virion Structure of a Human Rhinovirus
Human Rhinovirus 14 has a pseudo T=3 icosahedral structure in which 60 copies of the three larger capsid proteins VP1, VP2 and VP3 are arranged in an icosahedral surface lattice, which reminds of the T=3 viruses such as tomato bushy stunt virus and southern bean mosaic virus. The overall seconary and teritiary structures of VP1, VP2 and VP3 are very similar. In the surface areas of contact, interactions between VP1 and VP3 are predominant. Major contacts among VP1, VP2 and VP3 are between the beta-barrel moieties VP4 is associated with the capsid interior by a distributed network of contacts with VP1, VP2 and VP3 wihtin a promoter. As the virion assembly proceeds, the solvent-accessible surface area becomes increasingly hydrophilic in character. A mixed parallel and antiparallel seven-stranded sheet is composed of the beta C, beta H, beta E and beta F strands of VP3 in one pentamer and beta A1 and beta A2 of VP2 and the VP1 amino terminus in another pentamer. This association plays an important role in holding pentamers together in the mature virion as this contact region includes more than half the total short non-bonded contact between pentamers. Contacts between protomers within pentamers are more extensive than the contacts betwen pentamers, explaining in part the stability of pentamers. The immunogenic regions are correlated with high solvent accessibility: accessibility to large probes and high thermal parameters. Surface residues in the putative cellular receptor recognition site, the canyon, have lower thermal parameters than other portions of the human RV 14 surface. A number of unsual crevices exist in the protein shell of human RV 14, including the hydrophobic pocket in VP1 which is the locus binding for the WIN antiviral agents. These may be required for conformational flexibility during both assembly and disassembly. The structures of the beta-barrells of human RV 14 VP1, VP2 and VP3 are compared with each other and with
A number of unusual crevices exist in the protein shell of human rhinovirus 14, including the hydrophobic pocket in VP1 which is the locus of binding for the WIN antiviral agents. These may be required for conformational flexibility during assembly and disassembly.
Reproductive Cycle of a Rhinovirus in a Host Cell
The RV is inhaled directly or finds its way to the nassal passage through hands that are contaminated with the virus. The virus is then transported to the back of the nose by the regular functioning of the nose itself. Here, the RV attaches itself to the receptors at the surface of the nasal cells, where it reproduces. These receptors are called Intercellular Adhesion Molecule- 1(ICAM- 1). The reproductive cycle of the RV is 8-12 hours long. Once the cells have been attacked, in the infected cells, the virus replicates as rapidly as possible, and continually sheds progeny viruses. These progeny viruses can propagate the infection by invading neighboring cells. The reproduction cycle for the rhino virus is similar to that of other picornaviruses and is represented diagramatically here.
The infection remains localized in the upper respiratory tract. This occurs for one very important reason: rhinoviruses are extremely inefficient replicators at temperatures above 33°C. The virus may find its way to the lower portion of the lungs, but temperatures there are several degress warmer (approximately 37°C) and are not conducive to rhinoviral infection. The virus can also be swallowed and end up in the stomach where both increased temperature and decreased pH work to prevent infection. Unlike poliovirus, the rhinovirus capsid irreversibly disassembles at low pH, effectively inactivating the virus.
Viral Ecology & Pathology
RV infections occur worldwide. There are two seasonal peaks of infection: the first during late summer and early autumn and the second in Spring. At any one given time, numerous serotypes may be circulating simultaneously in a particular geographic are or community. It has been postulated that the ecology of rhinoviruses include antigenic drift and shift. Numbered in chronoligical order of discovery, lower-numbered serotypes have been replaced by higher-unumbered serotypes as the predominant strains circulating in the community in recent years. Newer prototypes appear to be variants of lower-numbered strains better adapted.
A common individual is estimated to suffer 2 to 5 episodes of colds each year. Cold infections are most common during early life and generally decline with an increase in age, probably because the body creates antibodies against previously encountered strains. Close contact and crowdedness appear to increase the transmission of rhinoviruses and the peak exertion occurs during the acute phase of illness.
The nasal epithelium is the primary site of RV infection. Virus detection in nasal washings can be seen within 24 hours of inoculation and this number reaches a maximum peak by the second or third day. The titres then start to decline and the virus can not usually be detected after the fifth day. A special humoral response is found in both serum and nasal secretions after infection. Serum-neutralizing antibodies do not appear until 14 days after infection so recovery is probably not mediated by antibodies. These serum antibodies, however, remain elevated for many years and are probably responsible for protecting the prson against reinfection. Local neutralizing antibodies are lost after two years though.