https://microbewiki.kenyon.edu/index.php?title=Saccharophagus_degradans&feed=atom&action=historySaccharophagus degradans - Revision history2024-03-28T09:14:43ZRevision history for this page on the wikiMediaWiki 1.39.6https://microbewiki.kenyon.edu/index.php?title=Saccharophagus_degradans&diff=55046&oldid=prevBarichD at 03:33, 20 August 20102010-08-20T03:33:49Z<p></p>
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</table>BarichDhttps://microbewiki.kenyon.edu/index.php?title=Saccharophagus_degradans&diff=26952&oldid=prevBuschurk at 16:16, 27 November 20072007-11-27T16:16:28Z<p></p>
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<tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>Current research into ''S. degradans'' CP degrading system has revealed that it can grow on cellulose alone without any help from other microorganisms. Cellulose degradation often requires a number of microorganisms working together to completely break it down. This prompted researchers to find out what was responsible for ''S. degradans''’ unique ability to grow on pure culture. The bacteria <del style="font-weight: bold; text-decoration: none;">was </del>grown on cellulose culture and then lysed to isolate the cellulose depolymerases. Mass spectrometry was then used to identify and match the enzymes to known ones. The researched resulted in the identification of 13 cellulose depolymerases that were complemented with seven accessory enzymes (3).</div></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>Current research into ''S. degradans'' CP degrading system has revealed that it can grow on cellulose alone without any help from other microorganisms. Cellulose degradation often requires a number of microorganisms working together to completely break it down. This prompted researchers to find out what was responsible for ''S. degradans''’ unique ability to grow on pure culture. The bacteria <ins style="font-weight: bold; text-decoration: none;">were </ins>grown on cellulose culture and then lysed to isolate the cellulose depolymerases. Mass spectrometry was then used to identify and match the enzymes to known ones. The researched resulted in the identification of 13 cellulose depolymerases that were complemented with seven accessory enzymes (3).</div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td></tr>
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</table>Buschurkhttps://microbewiki.kenyon.edu/index.php?title=Saccharophagus_degradans&diff=26128&oldid=prevChw006: /* Description and significance */2007-08-29T20:37:01Z<p><span dir="auto"><span class="autocomment">Description and significance</span></span></p>
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<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>==Description and significance==</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>==Description and significance==</div></td></tr>
<tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>[[Image:Mdeg_72.jpg|frame|right|''Saccharophagus degradans''. From [http://genome.jgi-psf.org/finished_microbes/micde/micde.home.html DOE Joint Genome Institute.]]]</div></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>[[Image:Mdeg_72.jpg|frame|right|''Saccharophagus degradans'' <ins style="font-weight: bold; text-decoration: none;">2-40</ins>. From [http://genome.jgi-psf.org/finished_microbes/micde/micde.home.html DOE Joint Genome Institute.]]]</div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>''Saccharophagus degradans'' refers to a species of marine bacteria formally known as ''Microbulbifer degradans''. So far the only known strain is 2-40. It is a rod-shaped, aerobic, gram-negative, and motile &gamma;-proteobacterium that was first isolated from decaying salt marsh cord grass ''Spartina alterniflora'' found in the Chesapeake Bay (2,3). ''S. degradans'' was isolated by pressing partially decomposed ''S. alterniflora'' into 1% peptone-half-strength-seawater agar plates. It was found that sea salt and carbohydrates were needed for growth of the bacteria. In addition, temperature range for growth was found to be 5 to 40&deg;C with an optimum of 37&deg;C while optimum pH was 7.5 (6). ''S. degradans'' is related to a group of marine bacteria that are responsible for the degradation of complex polysaccharides found in the ocean. This group includes the ''Microbulbifer'', ''Teredinibacter'', and ''Saccharophagus'' bacteria. Very little is known about how the almost annual 25 billion tons of CPs produced by organisms such as algae, land plants, crustaceans, bacteria and fungi are recycled back into usable carbon (1,4). Because of its relative importance to the marine carbon cycle, the US Department of Energy deemed it important to sequencing the genome of ''S. degradans'' 2-40 (1). ''S. degradans'' is unique in that it is able to degrade at least 10 different complex polysaccharides (CP) including agar, alginate, cellulose, chitin, &beta;-glucan, laminarin, pectin, pullulan, starch, and xylan (2). What makes it even more amazing is that it is able to use all 10 CPs as its sole carbon and energy source. Although ''S. degradans'' was initially isolated in 1988, significant research was not done on it till 2005 when the genome was sequenced.</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>''Saccharophagus degradans'' refers to a species of marine bacteria formally known as ''Microbulbifer degradans''. So far the only known strain is 2-40. It is a rod-shaped, aerobic, gram-negative, and motile &gamma;-proteobacterium that was first isolated from decaying salt marsh cord grass ''Spartina alterniflora'' found in the Chesapeake Bay (2,3). ''S. degradans'' was isolated by pressing partially decomposed ''S. alterniflora'' into 1% peptone-half-strength-seawater agar plates. It was found that sea salt and carbohydrates were needed for growth of the bacteria. In addition, temperature range for growth was found to be 5 to 40&deg;C with an optimum of 37&deg;C while optimum pH was 7.5 (6). ''S. degradans'' is related to a group of marine bacteria that are responsible for the degradation of complex polysaccharides found in the ocean. This group includes the ''Microbulbifer'', ''Teredinibacter'', and ''Saccharophagus'' bacteria. Very little is known about how the almost annual 25 billion tons of CPs produced by organisms such as algae, land plants, crustaceans, bacteria and fungi are recycled back into usable carbon (1,4). Because of its relative importance to the marine carbon cycle, the US Department of Energy deemed it important to sequencing the genome of ''S. degradans'' 2-40 (1). ''S. degradans'' is unique in that it is able to degrade at least 10 different complex polysaccharides (CP) including agar, alginate, cellulose, chitin, &beta;-glucan, laminarin, pectin, pullulan, starch, and xylan (2). What makes it even more amazing is that it is able to use all 10 CPs as its sole carbon and energy source. Although ''S. degradans'' was initially isolated in 1988, significant research was not done on it till 2005 when the genome was sequenced.</div></td></tr>
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</table>Chw006https://microbewiki.kenyon.edu/index.php?title=Saccharophagus_degradans&diff=26122&oldid=prevChw006: /* Description and significance */2007-08-29T20:36:22Z<p><span dir="auto"><span class="autocomment">Description and significance</span></span></p>
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<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[Image:Mdeg_72.jpg|frame|right|''Saccharophagus degradans''. From [http://genome.jgi-psf.org/finished_microbes/micde/micde.home.html DOE Joint Genome Institute.]]]</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[Image:Mdeg_72.jpg|frame|right|''Saccharophagus degradans''. From [http://genome.jgi-psf.org/finished_microbes/micde/micde.home.html DOE Joint Genome Institute.]]]</div></td></tr>
<tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>''Saccharophagus degradans'' refers to a species of marine bacteria formally known as ''Microbulbifer degradans''. So far the only known strain is 2-40. It is a rod-shaped, aerobic, gram-negative, and motile &gamma;-proteobacterium that was first isolated from decaying salt marsh cord grass ''Spartina alterniflora'' found in the Chesapeake Bay (2,3). ''S. degradans'' was isolated by pressing partially decomposed ''S. alterniflora'' into 1% peptone-half-strength-seawater agar plates. It was found that sea salt and carbohydrates were needed for growth of the bacteria. In addition, temperature range for growth was found to be 5 to 40&deg;C with an optimum of 37&deg;C while optimum pH was 7.5 (6). ''S. degradans'' is related to a group of marine bacteria that are responsible for the degradation of complex polysaccharides found in the ocean. This group includes the ''Microbulbifer'', ''Teredinibacter'', and ''Saccharophagus'' bacteria. Very little is known about how the almost annual 25 billion tons of CPs produced by organisms such as algae, land plants, crustaceans, bacteria and fungi are recycled back into usable carbon (1,4). Because of its relative importance to the marine carbon cycle, the US Department of Energy deemed it important to sequencing the genome of ''S. degradans'' 2-40 (1). ''S. degradans'' is unique in that it is able to degrade at least 10 different complex polysaccharides (CP) including agar, alginate, cellulose, chitin, &beta;-glucan, laminarin, pectin, pullulan, starch, and xylan (2). What makes it even more amazing is that it is able to use all 10 CPs as its sole carbon and energy source.</div></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>''Saccharophagus degradans'' refers to a species of marine bacteria formally known as ''Microbulbifer degradans''. So far the only known strain is 2-40. It is a rod-shaped, aerobic, gram-negative, and motile &gamma;-proteobacterium that was first isolated from decaying salt marsh cord grass ''Spartina alterniflora'' found in the Chesapeake Bay (2,3). ''S. degradans'' was isolated by pressing partially decomposed ''S. alterniflora'' into 1% peptone-half-strength-seawater agar plates. It was found that sea salt and carbohydrates were needed for growth of the bacteria. In addition, temperature range for growth was found to be 5 to 40&deg;C with an optimum of 37&deg;C while optimum pH was 7.5 (6). ''S. degradans'' is related to a group of marine bacteria that are responsible for the degradation of complex polysaccharides found in the ocean. This group includes the ''Microbulbifer'', ''Teredinibacter'', and ''Saccharophagus'' bacteria. Very little is known about how the almost annual 25 billion tons of CPs produced by organisms such as algae, land plants, crustaceans, bacteria and fungi are recycled back into usable carbon (1,4). Because of its relative importance to the marine carbon cycle, the US Department of Energy deemed it important to sequencing the genome of ''S. degradans'' 2-40 (1). ''S. degradans'' is unique in that it is able to degrade at least 10 different complex polysaccharides (CP) including agar, alginate, cellulose, chitin, &beta;-glucan, laminarin, pectin, pullulan, starch, and xylan (2). What makes it even more amazing is that it is able to use all 10 CPs as its sole carbon and energy source<ins style="font-weight: bold; text-decoration: none;">. Although ''S. degradans'' was initially isolated in 1988, significant research was not done on it till 2005 when the genome was sequenced</ins>.</div></td></tr>
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</table>Chw006https://microbewiki.kenyon.edu/index.php?title=Saccharophagus_degradans&diff=26113&oldid=prevChw006: /* Genome structure */2007-08-29T20:33:52Z<p><span dir="auto"><span class="autocomment">Genome structure</span></span></p>
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<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>==Genome structure==</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>==Genome structure==</div></td></tr>
<tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>''Saccharophagus degradans'' has a circular chromosome that is 5,057,531 bp long. There are 4,008 protein coding genes out of a total of 4,067. The genome also includes 50 structural RNAs (5). What originally set ''S. degradans'' apart from the ''Microbulbifer'' and ''Teredinibacter'' groups was that it’s G+C content was 45.8% as compared to the 57-59% and 49-51% of ''Microbulbifer'' and ''Teredinibacter'' bacteria respectively (1). So far there have been identified 180 open reading frames (ORF) that code for carbohydrases. There are also around 112 ORFs that contain catalytic and/or carbohydrate-binding modules (CBM) with specificity for plant-derived polysaccharides (3). There are no known plasmids associated with ''Saccharophagus degradans'' that have been identified at this point.</div></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>''Saccharophagus degradans'' has a circular chromosome that is 5,057,531 bp long. There are 4,008 protein coding genes out of a total of 4,067. The genome also includes 50 structural RNAs (5). What originally set ''S. degradans'' apart from the ''Microbulbifer'' and ''Teredinibacter'' groups was that it’s G+C content was 45.8% as compared to the 57-59% and 49-51% of ''Microbulbifer'' and ''Teredinibacter'' bacteria respectively (1). So far there have been identified 180 open reading frames (ORF) that code for carbohydrases. There are also around 112 ORFs that contain catalytic and/or carbohydrate-binding modules (CBM) with specificity for plant-derived polysaccharides (3). <ins style="font-weight: bold; text-decoration: none;">This is unique in that the number of ORFs is relatively large compared with other organisms with the same CP degrading functions. It is also worth noting that the size of the chromosome is relatively small for an organism with such a versatile polysaccharide degrading system. </ins>There are no known plasmids associated with ''Saccharophagus degradans'' that have been identified at this point.</div></td></tr>
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<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>==Cell structure and metabolism==</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>==Cell structure and metabolism==</div></td></tr>
</table>Chw006https://microbewiki.kenyon.edu/index.php?title=Saccharophagus_degradans&diff=26097&oldid=prevChw006: /* Description and significance */2007-08-29T20:30:32Z<p><span dir="auto"><span class="autocomment">Description and significance</span></span></p>
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<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>==Description and significance==</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>==Description and significance==</div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[Image:Mdeg_72.jpg|frame|right|''Saccharophagus degradans''. From [http://genome.jgi-psf.org/finished_microbes/micde/micde.home.html DOE Joint Genome Institute.]]]</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[Image:Mdeg_72.jpg|frame|right|''Saccharophagus degradans''. From [http://genome.jgi-psf.org/finished_microbes/micde/micde.home.html DOE Joint Genome Institute.]]]</div></td></tr>
<tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>''Saccharophagus degradans'' <del style="font-weight: bold; text-decoration: none;">2-40 is </del>a marine <del style="font-weight: bold; text-decoration: none;">bacterium that was </del>formally known as ''Microbulbifer degradans'' 2-40. It is a rod-shaped, aerobic, gram-negative, and motile &gamma;-proteobacterium that was first isolated from decaying salt marsh cord grass ''Spartina alterniflora'' found in the Chesapeake Bay (2,3). ''S. degradans'' was isolated by pressing partially decomposed ''S. alterniflora'' into 1% peptone-half-strength-seawater agar plates. It was found that sea salt and carbohydrates were needed for growth of the bacteria. In addition, temperature range for growth was found to be 5 to 40&deg;C with an optimum of 37&deg;C while optimum pH was 7.5 (6). ''S. degradans'' is related to a group of marine bacteria that are responsible for the degradation of complex polysaccharides found in the ocean. This group includes the ''Microbulbifer'', ''Teredinibacter'', and ''Saccharophagus'' bacteria. Very little is known about how the almost annual 25 billion tons of CPs produced by organisms such as algae, land plants, crustaceans, bacteria and fungi are recycled back into usable carbon (1,4). Because of its relative importance to the marine carbon cycle, the US Department of Energy deemed it important to sequencing the genome of ''S. degradans'' 2-40 (1). ''S. degradans'' is unique in that it is able to degrade at least 10 different complex polysaccharides (CP) including agar, alginate, cellulose, chitin, &beta;-glucan, laminarin, pectin, pullulan, starch, and xylan (2). What makes it even more amazing is that it is able to use all 10 CPs as its sole carbon and energy source.</div></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>''Saccharophagus degradans'' <ins style="font-weight: bold; text-decoration: none;">refers to </ins>a <ins style="font-weight: bold; text-decoration: none;">species of </ins>marine <ins style="font-weight: bold; text-decoration: none;">bacteria </ins>formally known as ''Microbulbifer degradans''<ins style="font-weight: bold; text-decoration: none;">. So far the only known strain is </ins>2-40. It is a rod-shaped, aerobic, gram-negative, and motile &gamma;-proteobacterium that was first isolated from decaying salt marsh cord grass ''Spartina alterniflora'' found in the Chesapeake Bay (2,3). ''S. degradans'' was isolated by pressing partially decomposed ''S. alterniflora'' into 1% peptone-half-strength-seawater agar plates. It was found that sea salt and carbohydrates were needed for growth of the bacteria. In addition, temperature range for growth was found to be 5 to 40&deg;C with an optimum of 37&deg;C while optimum pH was 7.5 (6). ''S. degradans'' is related to a group of marine bacteria that are responsible for the degradation of complex polysaccharides found in the ocean. This group includes the ''Microbulbifer'', ''Teredinibacter'', and ''Saccharophagus'' bacteria. Very little is known about how the almost annual 25 billion tons of CPs produced by organisms such as algae, land plants, crustaceans, bacteria and fungi are recycled back into usable carbon (1,4). Because of its relative importance to the marine carbon cycle, the US Department of Energy deemed it important to sequencing the genome of ''S. degradans'' 2-40 (1). ''S. degradans'' is unique in that it is able to degrade at least 10 different complex polysaccharides (CP) including agar, alginate, cellulose, chitin, &beta;-glucan, laminarin, pectin, pullulan, starch, and xylan (2). What makes it even more amazing is that it is able to use all 10 CPs as its sole carbon and energy source.</div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>==Genome structure==</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>==Genome structure==</div></td></tr>
</table>Chw006https://microbewiki.kenyon.edu/index.php?title=Saccharophagus_degradans&diff=24258&oldid=prevChw006: /* References */2007-08-29T09:00:07Z<p><span dir="auto"><span class="autocomment">References</span></span></p>
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<td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">Revision as of 09:00, 29 August 2007</td>
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<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>==References==</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>==References==</div></td></tr>
<tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del style="font-weight: bold; text-decoration: none;">[Sample reference] [http://ijs</del>.<del style="font-weight: bold; text-decoration: none;">sgmjournals</del>.<del style="font-weight: bold; text-decoration: none;">org/cgi/reprint/50/2/489 Takai</del>, <del style="font-weight: bold; text-decoration: none;">K</del>., <del style="font-weight: bold; text-decoration: none;">Sugai</del>, <del style="font-weight: bold; text-decoration: none;">A</del>., <del style="font-weight: bold; text-decoration: none;">Itoh</del>, <del style="font-weight: bold; text-decoration: none;">T</del>., and <del style="font-weight: bold; text-decoration: none;">Horikoshi</del>, <del style="font-weight: bold; text-decoration: none;">K</del>. "''<del style="font-weight: bold; text-decoration: none;">Palaeococcus ferrophilus</del>'' gen. nov., sp. nov., a <del style="font-weight: bold; text-decoration: none;">barophilic, hyperthermophilic archaeon from a deep-sea hydrothermal vent chimney</del>". ''International Journal of Systematic and Evolutionary Microbiology''. <del style="font-weight: bold; text-decoration: none;">2000</del>. Volume <del style="font-weight: bold; text-decoration: none;">50</del>. p. <del style="font-weight: bold; text-decoration: none;">489</del>-<del style="font-weight: bold; text-decoration: none;">500</del>.]</div></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;">1. '''Ekborg, N. A., Gonzalez, J</ins>. <ins style="font-weight: bold; text-decoration: none;">M</ins>., <ins style="font-weight: bold; text-decoration: none;">Howard, M. B</ins>., <ins style="font-weight: bold; text-decoration: none;">Taylor</ins>, <ins style="font-weight: bold; text-decoration: none;">L. E</ins>., <ins style="font-weight: bold; text-decoration: none;">Hutcheson</ins>, <ins style="font-weight: bold; text-decoration: none;">S. W</ins>., and <ins style="font-weight: bold; text-decoration: none;">Weiner</ins>, <ins style="font-weight: bold; text-decoration: none;">R</ins>. <ins style="font-weight: bold; text-decoration: none;">M.''' </ins>"''<ins style="font-weight: bold; text-decoration: none;">Saccarophagus degradans</ins>'' gen. nov., sp. nov., a <ins style="font-weight: bold; text-decoration: none;">versatile marine degrader of complex polysaccharides</ins>". ''International Journal of Systematic and Evolutionary Microbiology''. <ins style="font-weight: bold; text-decoration: none;">2005</ins>. Volume <ins style="font-weight: bold; text-decoration: none;">55</ins>. p. <ins style="font-weight: bold; text-decoration: none;">1545</ins>-<ins style="font-weight: bold; text-decoration: none;">1549. [http://ijs.sgmjournals</ins>.<ins style="font-weight: bold; text-decoration: none;">org/cgi/content/full/55/4/1545 http://ijs.sgmjournals.org/cgi/content/full/55/4/1545</ins>]</div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td></tr>
<tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del style="font-weight: bold; text-decoration: none;">1</del>. '''Ekborg, N. A., <del style="font-weight: bold; text-decoration: none;">Gonzalez</del>, <del style="font-weight: bold; text-decoration: none;">J</del>. <del style="font-weight: bold; text-decoration: none;">M</del>., <del style="font-weight: bold; text-decoration: none;">Howard</del>, <del style="font-weight: bold; text-decoration: none;">M</del>. B., <del style="font-weight: bold; text-decoration: none;">Taylor</del>, <del style="font-weight: bold; text-decoration: none;">L</del>. <del style="font-weight: bold; text-decoration: none;">E</del>., Hutcheson, S. W<del style="font-weight: bold; text-decoration: none;">., and Weiner, R. M</del>.''' "''<del style="font-weight: bold; text-decoration: none;">Saccarophagus </del>degradans'' <del style="font-weight: bold; text-decoration: none;">gen. nov., sp. nov., a versatile marine degrader of complex polysaccharides</del>". ''<del style="font-weight: bold; text-decoration: none;">International Journal of Systematic </del>and <del style="font-weight: bold; text-decoration: none;">Evolutionary </del>Microbiology''. <del style="font-weight: bold; text-decoration: none;">2005</del>. Volume <del style="font-weight: bold; text-decoration: none;">55</del>. p. <del style="font-weight: bold; text-decoration: none;">1545</del>-<del style="font-weight: bold; text-decoration: none;">1549</del>.</div></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;">2</ins>. '''Ekborg, N. A., <ins style="font-weight: bold; text-decoration: none;">Taylor</ins>, <ins style="font-weight: bold; text-decoration: none;">L</ins>. <ins style="font-weight: bold; text-decoration: none;">E</ins>., <ins style="font-weight: bold; text-decoration: none;">Longmire</ins>, <ins style="font-weight: bold; text-decoration: none;">A. G</ins>.<ins style="font-weight: bold; text-decoration: none;">, Henrissat, </ins>B., <ins style="font-weight: bold; text-decoration: none;">Weiner</ins>, <ins style="font-weight: bold; text-decoration: none;">R</ins>. <ins style="font-weight: bold; text-decoration: none;">M</ins>., <ins style="font-weight: bold; text-decoration: none;">and </ins>Hutcheson, S. W. '''"<ins style="font-weight: bold; text-decoration: none;">Genomic and Proteomic Analyses of the Agarolytic System Expressed by </ins>''<ins style="font-weight: bold; text-decoration: none;">Saccharophagus </ins>degradans'' <ins style="font-weight: bold; text-decoration: none;">2-40</ins>". ''<ins style="font-weight: bold; text-decoration: none;">Applied </ins>and <ins style="font-weight: bold; text-decoration: none;">Environmental </ins>Microbiology''. <ins style="font-weight: bold; text-decoration: none;">May 2006</ins>. Volume <ins style="font-weight: bold; text-decoration: none;">72. No. 5</ins>. p. <ins style="font-weight: bold; text-decoration: none;">3396</ins>-<ins style="font-weight: bold; text-decoration: none;">3405. [http://aem.asm.org/cgi/content/full/72/5/3396?view=long&pmid=16672483 http://aem.asm</ins>.<ins style="font-weight: bold; text-decoration: none;">org/cgi/content/full/72/5/3396?view=long&pmid=16672483]</ins></div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td></tr>
<tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del style="font-weight: bold; text-decoration: none;">2. '''Ekborg, N. A., Taylor, L. E., Longmire, A. G., Henrissat, B., Weiner, R. M., and Hutcheson, S. W. '''"Genomic and Proteomic Analyses of the Agarolytic System Expressed by ''Saccharophagus degradans'' 2-40". ''Applied and Environmental Microbiology''. May 2006. Volume 72. No. 5. p. 3396-3405.</del></div></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>3. '''Taylor, L. E., Henrissat, B., Coutinho, P. M., Ekborg, N. A., Hutcheson, S. W., and Weiner, R. M.''' "Complete Cellulase System in the Marine Bacterium ''Saccharophagus degradans'' Strain 2-40". ''Journal of Bacteriology''. June 2006. Volume 118. No. 11. p. 3849-3861. <ins style="font-weight: bold; text-decoration: none;">[http://jb.asm.org/cgi/content/full/188/11/3849?view=long&pmid=16707677 http://jb.asm.org/cgi/content/full/188/11/3849?view=long&pmid=16707677]</ins></div></td></tr>
<tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div> </div></td><td colspan="2" class="diff-side-added"></td></tr>
<tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>3. '''Taylor, L. E., Henrissat, B., Coutinho, P. M., Ekborg, N. A., Hutcheson, S. W., and Weiner, R. M.''' "Complete Cellulase System in the Marine Bacterium ''Saccharophagus degradans'' Strain 2-40". ''Journal of Bacteriology''. June 2006. Volume 118. No. 11. p. 3849-3861.</div></td><td colspan="2" class="diff-side-added"></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>4. '''JGI Saccharophagus degradans 2-40 Home'''. US Department of Energy Joint Genome Institute. 2005. [http://genome.jgi-psf.org/finished_microbes/micde/micde.home.html http://genome.jgi-psf.org/finished_microbes/micde/micde.home.html]</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>4. '''JGI Saccharophagus degradans 2-40 Home'''. US Department of Energy Joint Genome Institute. 2005. [http://genome.jgi-psf.org/finished_microbes/micde/micde.home.html http://genome.jgi-psf.org/finished_microbes/micde/micde.home.html]</div></td></tr>
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<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>5. '''''Saccharophagus degradans'''''. genus. NCBI reference: [http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genome&Cmd=ShowDetailView&TermToSearch=19331 http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genome&Cmd=ShowDetailView&TermToSearch=19331]</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>5. '''''Saccharophagus degradans'''''. genus. NCBI reference: [http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genome&Cmd=ShowDetailView&TermToSearch=19331 http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genome&Cmd=ShowDetailView&TermToSearch=19331]</div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td></tr>
<tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>6. '''Andrykovitch, G. and Marx, I.''' "Isolation of a New Polysaccharide-Digesting Bacterium from a Salt March". ''Applied and Environmental Microbiology''. April 1988. Volume 54. No. 4. p. 1061-1062.</div></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>6. '''Andrykovitch, G. and Marx, I.''' "Isolation of a New Polysaccharide-Digesting Bacterium from a Salt March". ''Applied and Environmental Microbiology''. April 1988. Volume 54. No. 4. p. 1061-1062. <ins style="font-weight: bold; text-decoration: none;">[http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=16347602 http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=16347602]</ins></div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>Edited by Cheng Liang Wu, student of [mailto:ralarsen@ucsd.edu Rachel Larsen]</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>Edited by Cheng Liang Wu, student of [mailto:ralarsen@ucsd.edu Rachel Larsen]</div></td></tr>
</table>Chw006https://microbewiki.kenyon.edu/index.php?title=Saccharophagus_degradans&diff=24251&oldid=prevChw006: /* References */2007-08-29T08:54:49Z<p><span dir="auto"><span class="autocomment">References</span></span></p>
<table style="background-color: #fff; color: #202122;" data-mw="interface">
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<td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">Revision as of 08:54, 29 August 2007</td>
</tr><tr><td colspan="2" class="diff-lineno" id="mw-diff-left-l65">Line 65:</td>
<td colspan="2" class="diff-lineno">Line 65:</td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>5. '''''Saccharophagus degradans'''''. genus. NCBI reference: [http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genome&Cmd=ShowDetailView&TermToSearch=19331 http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genome&Cmd=ShowDetailView&TermToSearch=19331]</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>5. '''''Saccharophagus degradans'''''. genus. NCBI reference: [http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genome&Cmd=ShowDetailView&TermToSearch=19331 http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genome&Cmd=ShowDetailView&TermToSearch=19331]</div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td></tr>
<tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>6.</div></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>6. <ins style="font-weight: bold; text-decoration: none;">'''Andrykovitch, G. and Marx, I.''' "Isolation of a New Polysaccharide-Digesting Bacterium from a Salt March". ''Applied and Environmental Microbiology''. April 1988. Volume 54. No. 4. p. 1061-1062</ins>.</div></td></tr>
<tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div> </div></td><td colspan="2" class="diff-side-added"></td></tr>
<tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del style="font-weight: bold; text-decoration: none;">7</del>.</div></td><td colspan="2" class="diff-side-added"></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>Edited by Cheng Liang Wu, student of [mailto:ralarsen@ucsd.edu Rachel Larsen]</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>Edited by Cheng Liang Wu, student of [mailto:ralarsen@ucsd.edu Rachel Larsen]</div></td></tr>
</table>Chw006https://microbewiki.kenyon.edu/index.php?title=Saccharophagus_degradans&diff=24239&oldid=prevChw006: /* Description and significance */2007-08-29T08:49:52Z<p><span dir="auto"><span class="autocomment">Description and significance</span></span></p>
<table style="background-color: #fff; color: #202122;" data-mw="interface">
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<td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">Revision as of 08:49, 29 August 2007</td>
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<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>==Description and significance==</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>==Description and significance==</div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[Image:Mdeg_72.jpg|frame|right|''Saccharophagus degradans''. From [http://genome.jgi-psf.org/finished_microbes/micde/micde.home.html DOE Joint Genome Institute.]]]</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[Image:Mdeg_72.jpg|frame|right|''Saccharophagus degradans''. From [http://genome.jgi-psf.org/finished_microbes/micde/micde.home.html DOE Joint Genome Institute.]]]</div></td></tr>
<tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>''Saccharophagus degradans'' 2-40 is a marine bacterium that was formally known as ''Microbulbifer degradans'' 2-40. It is a rod-shaped, aerobic, gram-negative, and motile &gamma;-proteobacterium that was first isolated from decaying salt marsh cord grass ''Spartina alterniflora'' found in the Chesapeake Bay (2,3). ''S. degradans'' was isolated by pressing partially decomposed ''S. alterniflora'' into 1% peptone-half-strength-seawater agar plates. It was found that sea salt and carbohydrates were needed for growth of the bacteria. In addition, temperature range for growth was found to be 5 to 40&deg;C with an optimum of 37&deg;C while optimum pH was 7.5 (<del style="font-weight: bold; text-decoration: none;">7</del>). ''S. degradans'' is related to a group of marine bacteria that are responsible for the degradation of complex polysaccharides found in the ocean. This group includes the ''Microbulbifer'', ''Teredinibacter'', and ''Saccharophagus'' bacteria. Very little is known about how the almost annual 25 billion tons of CPs produced by organisms such as algae, land plants, crustaceans, bacteria and fungi are recycled back into usable carbon (1,4). Because of its relative importance to the marine carbon cycle, the US Department of Energy deemed it important to sequencing the genome of ''S. degradans'' 2-40 (1). ''S. degradans'' is unique in that it is able to degrade at least 10 different complex polysaccharides (CP) including agar, alginate, cellulose, chitin, &beta;-glucan, laminarin, pectin, pullulan, starch, and xylan (2). What makes it even more amazing is that it is able to use all 10 CPs as its sole carbon and energy source.</div></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>''Saccharophagus degradans'' 2-40 is a marine bacterium that was formally known as ''Microbulbifer degradans'' 2-40. It is a rod-shaped, aerobic, gram-negative, and motile &gamma;-proteobacterium that was first isolated from decaying salt marsh cord grass ''Spartina alterniflora'' found in the Chesapeake Bay (2,3). ''S. degradans'' was isolated by pressing partially decomposed ''S. alterniflora'' into 1% peptone-half-strength-seawater agar plates. It was found that sea salt and carbohydrates were needed for growth of the bacteria. In addition, temperature range for growth was found to be 5 to 40&deg;C with an optimum of 37&deg;C while optimum pH was 7.5 (<ins style="font-weight: bold; text-decoration: none;">6</ins>). ''S. degradans'' is related to a group of marine bacteria that are responsible for the degradation of complex polysaccharides found in the ocean. This group includes the ''Microbulbifer'', ''Teredinibacter'', and ''Saccharophagus'' bacteria. Very little is known about how the almost annual 25 billion tons of CPs produced by organisms such as algae, land plants, crustaceans, bacteria and fungi are recycled back into usable carbon (1,4). Because of its relative importance to the marine carbon cycle, the US Department of Energy deemed it important to sequencing the genome of ''S. degradans'' 2-40 (1). ''S. degradans'' is unique in that it is able to degrade at least 10 different complex polysaccharides (CP) including agar, alginate, cellulose, chitin, &beta;-glucan, laminarin, pectin, pullulan, starch, and xylan (2). What makes it even more amazing is that it is able to use all 10 CPs as its sole carbon and energy source.</div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>==Genome structure==</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>==Genome structure==</div></td></tr>
</table>Chw006https://microbewiki.kenyon.edu/index.php?title=Saccharophagus_degradans&diff=24238&oldid=prevChw006: /* References */2007-08-29T08:49:20Z<p><span dir="auto"><span class="autocomment">References</span></span></p>
<table style="background-color: #fff; color: #202122;" data-mw="interface">
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<td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">Revision as of 08:49, 29 August 2007</td>
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<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>3. '''Taylor, L. E., Henrissat, B., Coutinho, P. M., Ekborg, N. A., Hutcheson, S. W., and Weiner, R. M.''' "Complete Cellulase System in the Marine Bacterium ''Saccharophagus degradans'' Strain 2-40". ''Journal of Bacteriology''. June 2006. Volume 118. No. 11. p. 3849-3861.</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>3. '''Taylor, L. E., Henrissat, B., Coutinho, P. M., Ekborg, N. A., Hutcheson, S. W., and Weiner, R. M.''' "Complete Cellulase System in the Marine Bacterium ''Saccharophagus degradans'' Strain 2-40". ''Journal of Bacteriology''. June 2006. Volume 118. No. 11. p. 3849-3861.</div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td></tr>
<tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>4. JGI Saccharophagus degradans 2-40 Home. US Department of Energy Joint Genome Institute. 2005. [http://genome.jgi-psf.org/finished_microbes/micde/micde.home.html http://genome.jgi-psf.org/finished_microbes/micde/micde.home.html]</div></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>4. <ins style="font-weight: bold; text-decoration: none;">'''</ins>JGI Saccharophagus degradans 2-40 Home<ins style="font-weight: bold; text-decoration: none;">'''</ins>. US Department of Energy Joint Genome Institute. 2005. [http://genome.jgi-psf.org/finished_microbes/micde/micde.home.html http://genome.jgi-psf.org/finished_microbes/micde/micde.home.html]</div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td></tr>
<tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>5.</div></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>5. <ins style="font-weight: bold; text-decoration: none;">'''''Saccharophagus degradans'''''. genus. NCBI reference: [http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genome&Cmd=ShowDetailView&TermToSearch=19331 http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genome&Cmd=ShowDetailView&TermToSearch=19331]</ins></div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>6.</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>6.</div></td></tr>
</table>Chw006