A Microbial Biorealm page on the genus Streptococcus agalactiae
Higher order taxa
cellular organisms; Bacteria; Firmicutes; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus
Description and significance
Describe the appearance, habitat, etc. of the organism, and why it is important enough to have its genome sequenced. Describe how and where it was isolated. Include a picture or two (with sources) if you can find them.
S. agalactiae, also referred to as group B streptococci (GBS) is a commensal bacterium colonizing the intestinal track of a significant proportion of the human population.
Describe the size and content of the genome. How many chromosomes? Circular or linear? Other interesting features? What is known about its sequence? Does it have any plasmids? Are they important to the organism's lifestyle?
The genome is 2 211 485 bases pairs long and contains 2118 protein coding genes.
Strains within S. agalactiae:
The genome of S. agalactiae strain NEM316, responsible for a fatal case of septicaemia, consists of a circular chromosome of 2 211 485 base pairs (bp). G+C content of genome is 35.6%, which is significantly lower than that of the genomes of S. pyogenes (38.5%) and of S. pneumoniae (39.7%). Seven sets of ribosomal RNA (23S, 5S and 16S) were identified to be organized within a 450kb region located on the right replichore of the chromosome next to the origin of replication (figure). 80 tRNA genes are identified, which recognize 31 out of 61 possible sense codons. The genome of strain NEM316 contains 2082 protein coding genes with 36 pseudogens. the gene orientation was observed to be strongly biased, as 81% of the coding sequences (CDS) are transcribed in the same orientation as the movement of the replication fork. This characteristic bias of gene orientation appears to be common feature of low G+C Gram positive bacteria.
Even though no complete genetic material of bacteriophage was identified in this strain NEM316 gene, it was observed that there are a large number of plasmid- and phage-related genes. 12 genes were identified to be related to plamid function (replication, partition or transfer) which are often found near integrase genes, while 12 genes were identified to encode proteins similar to phage integrase, which an enzyme produced by a retrovirus enabling its genetic material to be integrated into the DNA of the infected cell.
Cell structure and metabolism
Describe any interesting features and/or cell structures; how it gains energy; what important molecules it produces.
Describe any interactions with other organisms (included eukaryotes), contributions to the environment, effect on environment, etc.
How does this organism cause disease? Human, animal, plant hosts? Virulence factors, as well as patient symptoms.
Application to Biotechnology
Does this organism produce any useful compounds or enzymes? What are they and how are they used?
Enter summaries of the most recent research here--at least three required
Philippe Glaser, Christophe Rusniok, Carmen Buchrieser, Fabien Chevalier, Lionel Frangeul, Tarek Msadek, Mohamed Zouine, Elisabeth Couvé, Lila Lalioui, Claire Poyart, Patrick Trieu-Cuot, Frank Kunst "Genome sequence of Streptococcus agalactiae, a pathogen causing invasive neonatal disease".Molecular Microbiology. 2002. 45 (6), 1499–1513.doi:10.1046/j.1365-2958.2002.03126.x
[Ferretti, J.J., McShan, W.M., Ajdic, D., Savic, D.J., Savic, G.,Ferretti, J.J., McShan, W.M., Ajdic, D., Savic, D.J., Savic, G., M1 strain of Streptococcus pyogenes. Proc Natl Acad Sci USA 98: 4658–4663.]
[Tettelin, H., Nelson, K.E., Paulsen, I.T., Eisen, J.A., Read, T.D., Peterson, S., et al. (2001) Complete genome sequence of a virulent isolate of Streptococcus pneumoniae. Science 293: 498–506.]
Edited by Ha Bean Kim,student of Rachel Larsen and Kit Pogliano