Suppression of Peptidoglycan Remodeling

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By [Frank Zhao]

Components of Gram-negative Cell Wall.By Linda Bruslind. [7].
Components of Gram-positive Cell Wall.By Linda Bruslind. [8].

Introduction


Peptidoglycan is a polymer made of sugars and amino acids that forms a layer outside the plasma membrane of bacterial cells. Peptidoglycans are cross-linked by peptides, serving as the cell wall that protects bacteria from the environment. Peptidoglycan limits the volume of the cell and thus it generates turgor pressure as the water rushes into the cell.[1] Gram-positive bacteria obtain a thicker peptidoglycan layer than Gram-negative bacteria but this layer is crucial to the survival of both types of bacteria.[2]


Many antibiotics target this component to kill the bacteria. For example, penicillin binds to penicillin-binding proteins and inhibits the synthesis of peptidoglycan, weakening the cell wall of bacteria. It has been discovered that a new mechanism could be used by antibiotics on peptidoglycan— blocking the action of autolysins, a peptidoglycan hydrolase that is essential for remodeling the bacterial cell wall during growth.[3] Studying how this new mechanism works could give us insight into developing new antibiotics against resistant strains.


Structure and Function


The peptidoglycan layer is located in the bacterial cell wall, consisting of chains of two alternating amino sugars, N-acetylglucosamine (an amide derivative of the monosaccharide glucose) and N-acetylmuramic acid (a combination of N-acetylglucosamine and phosphoenolpyruvate).The alternating amino sugars are linked by Teichoic acids, which are chains of phosphodiester-linked glycerol or ribitol.[1] Parallel chains of amino sugars can also be connected by cross-bridges made of extensions of peptides to form tetrapeptides, with m-Diaminopimelic acid binding D-Alanine.[4]

Structure of Peptidoglycan.By Linda Bruslind. [9].
Electron Microscopy of Purified Sacculi. [10].


Peptidoglycan sacculi cross-linked by peptides form a closed, sac-shaped structure that surrounds the cytoplasmic membrane. Peptidoglycan sacculi have been purified from Escherichia coli by incubation with boiling 4% sodium dodecyl sulfate.[5] While a bacterial cell contains a significant number of different kinds of molecules, there is only one peptidoglycan molecule in each bacterial cell, which contributes to 0.8% of the mass of the whole cell.[1]


The content of peptidoglycan sacculi could be different among bacterial species. In Gram-positive bacteria, such as Staphylococcus aureus, the tetrapeptide cross-bridges are made of L-alanine, D-glutamine, L-lysine, and D-alanine. In Gram-negative bacteria, on the other hand, the cross-bridges are constituted of L-alanine, D-glutamic acid, m-diaminopimelic acid, and D-alanine. Gram-positive bacteria typically have many layers (3-20) of peptidoglycan chains outside the cytoplasmic membrane, whereas Gram-negative bacteria often have one or two layers of peptidoglycan between the inner and outer membrane.[1]


Peptidoglycan plays a crucial role in the survival and reproduction of bacteria. It is the main component of the bacterial cell wall, forming a strong net-like structure that maintains the shape of the cell. Since bacteria are unicellular organisms, it is extremely important to protect the only cell from the outside environment. When the bacteria experience a significant osmotic pressure difference across the cell membrane, the cell envelope could prevent the cell from shrinking or expanding too much so that it lyses and dies.[6]


Peptidoglycan is also associated with binary fission, a reproductive process in which one bacterium divides into two bacteria. To successfully divide one cell into two, the peptidoglycan must grow as the bacterium elongates and quickly enclose both cells after division so that both of the progeny cells have complete cell envelopes.[7]


Biosynthesis


First, glutamine would transfer an amino group to fructose 6-phosphate, producing glucosamine-6-phosphate. Then, acetyl CoA would donate an acetyl group to the amino group on fructose 6-phosphate to make N-acetyl-glucosamine-6-phosphate, which would then turn into N-acetyl-glucosamine-1-phosphate, a monophosphate. After the reaction between N-acetyl-glucosamine-1-phosphate and Uridine triphosphate, an inorganic pyrophosphate is substituted with N-acetyl-glucosamine-1-phosphate, producing UDP-N-acetylglucosamine.[8]

Following the creation of the precursor for the N-acetylglucosamine in peptidoglycan, a lactyl group would be added to the glucosamine which converts UDP-N-acetylglucosamine into UDP-N-acetylmuramic acid. A phosphate from the alpha carbon of phosphoenolpyruvate would also be given off by the C3 hydroxyl group, creating an enol derivative that would later be reduced by NADPH. By adding five amino acids including D-alanyl-D-alanine, UDP-N-acetylmuramic acid can turn into a pentapeptide, completing the process of producing a precursor for N-acetylmuramic acid.[8]

In the cytoplasmic membrane, a lipid carrier named bactoprenol carries peptidoglycan precursors across the cell membrane. The mechanism behind this transport remains elusive, but precursors would be added to peptidoglycan once they get out of the cell membrane.[8]


Inhibitive Antibiotics Targeting Peptidoglycan

A vancomycin-intermediate Staphylococcus aureus strain isolated from the patient after failed vancomycin therapy.[11].

Peptidoglycan is unique to bacteria, which serves as a great target for antibiotics.

Penicillin, a famous antibiotic widely used around the world, targets the transpeptidase that cross-links the peptides.[1]Penicillin kills bacteria by inhibiting the biosynthesis of peptidoglycans, specifically cause the dysfunction of penicillin-bind proteins that catalyze the formation of tetrapeptide cross-bridges, weakening the cell wall. Since the peptidoglycans are no longer able to maintain the proper osmotic pressure, too much water would flow into the cell and result in cell lysis.[6]Moreover, given that penicillin interferes with the final step in peptidoglycan formation, excessive peptidoglycan precursors would build up in the cell, activating bacterial cell wall hydrolases and autolysins to break down the existing peptidoglycans.[9]

Vancomycin is another antibiotic that targets the formation of peptidoglycans in Gram-positive bacteria. Under normal conditions, D-Alanine would bind to m-Diaminopimelic acid to form a cross-bridge between parallel chains of peptidoglycans. However, vancomycin is able to bind to D-Ala-D-Ala, blocking the formation of cross-bridge.


Corbomycin and Complestatin

Bacteria treated with corbomycin or complestatin shows a twisted phenotype and failed to divide into progeny cells.[12].

Conclusion

References

  1. 1.0 1.1 1.2 1.3 1.4 Slonczewski, J., and Foster J. W.. Microbiology: An Evolving Science. New York
  2. Anon. n.d. “Bacteria.” Basic Biology. Retrieved April 8, 2021
  3. [1] Culp, Elizabeth J., Nicholas Waglechner, Wenliang Wang, Aline A. Fiebig-Comyn, Yen-Pang Hsu, Kalinka Koteva, David Sychantha, Brian K. Coombes, Michael S. Van Nieuwenhze, Yves V. Brun, and Gerard D. Wright. 2020. “Evolution-Guided Discovery of Antibiotics That Inhibit Peptidoglycan Remodelling.” Nature 578(7796):582–87. doi: 10.1038/s41586-020-1990-9.
  4. [2] Bruslind, Linda. n.d. “Bacteria: Cell Walls.” in General Microbiology. Oregon State University.
  5. [3] Vollmer, Waldemar, Didier Blanot, and Miguel A. de Pedro. 2008. “Peptidoglycan Structure and Architecture.” FEMS Microbiology Reviews 32(2):149–67. doi: 10.1111/j.1574-6976.2007.00094.x.
  6. 6.0 6.1 [4] Al-Nabulsi, Anas A., Tareq M. Osaili, Reyad R. Shaker, Amin N. Olaimat, Ziad W. Jaradat, Noor A. Zain Elabedeen, and Richard A. Holley. 2015. “Effects of Osmotic Pressure, Acid, or Cold Stresses on Antibiotic Susceptibility of Listeria Monocytogenes.” Food Microbiology 46:154–60. doi: 10.1016/j.fm.2014.07.015.
  7. [5] Editors, B. D. 2017. “Peptidoglycan.” Biology Dictionary. Retrieved April 8, 2021 (https://biologydictionary.net/peptidoglycan/).
  8. 8.0 8.1 8.2 White, D. (2007). The physiology and biochemistry of prokaryotes (3rd ed.). NY: Oxford University Press Inc.
  9. [6] “Benzylpenicillin.” Retrieved April 8, 2021.



Authored for BIOL 238 Microbiology, taught by Joan Slonczewski, 2021, Kenyon College.