https://microbewiki.kenyon.edu/index.php?title=Thermococcus_fumicolans&feed=atom&action=history
Thermococcus fumicolans - Revision history
2024-03-29T11:33:48Z
Revision history for this page on the wiki
MediaWiki 1.39.6
https://microbewiki.kenyon.edu/index.php?title=Thermococcus_fumicolans&diff=117665&oldid=prev
BarichD at 21:45, 1 December 2015
2015-12-01T21:45:40Z
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BarichD
https://microbewiki.kenyon.edu/index.php?title=Thermococcus_fumicolans&diff=78940&oldid=prev
Luoiris at 06:10, 15 December 2012
2012-12-15T06:10:24Z
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<tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del style="font-weight: bold; text-decoration: none;">[[Image:Tfumicrograph.png|thumb|350px|right|''Thermococcus fumicolans'' ST557. Image</del></div></td><td colspan="2" class="diff-side-added"></td></tr>
<tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del style="font-weight: bold; text-decoration: none;">courtesy of [http://wlink here.]]]</del></div></td><td colspan="2" class="diff-side-added"></td></tr>
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<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td></tr>
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<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>==Description and Significance==</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>==Description and Significance==</div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td></tr>
<tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>''Thermococcus fumicolans'' is an archaeal [<del style="font-weight: bold; text-decoration: none;">[</del>hyperthermophile<del style="font-weight: bold; text-decoration: none;">]</del>] found in deep-sea [[hydrothermal vent]] communities. It was isolated in 1997 by Godfroy et al. from vent chimney fragments taken from the North Fiji basin and classified in the genus ''Thermococcus'' based on its [[16S rRNA]] gene sequence. An [[obligate anaerobe]], it thrives in anoxic, sulfur-rich water being emitted from the vent at temperatures of 85 °C, with growth on amino acids and enhanced growth with elemental sulfur [1]. It is a [[chemoorganoheterotroph]] capable of surviving in harsher conditions than those characteristic of thermal vents, depending on nutrient and substrate availability [5]. Many ''T. fumicolans'' enzymes, such as ''Tfu'' DNA polymerase have very high thermostability and represent typical bacterial adaptations to the stresses of extreme environments.</div></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>''Thermococcus fumicolans'' is an <ins style="font-weight: bold; text-decoration: none;">[http://microbewiki.kenyon.edu/index.php/Taxonomy_Index </ins>archaeal<ins style="font-weight: bold; text-decoration: none;">] </ins>[<ins style="font-weight: bold; text-decoration: none;">http://en.wikipedia.org/wiki/Hyperthermophile </ins>hyperthermophile] found in deep-sea [[hydrothermal vent]] communities. It was isolated in 1997 by Godfroy et al. from vent chimney fragments taken from the North Fiji basin and classified in the genus ''Thermococcus'' based on its [[16S rRNA]] gene sequence. An [[obligate anaerobe]], it thrives in anoxic, sulfur-rich water being emitted from the vent at temperatures of 85 °C, with growth on amino acids and enhanced growth with elemental sulfur [1]. It is a [[chemoorganoheterotroph]] capable of surviving in harsher conditions than those characteristic of thermal vents, depending on nutrient and substrate availability [5]. Many ''T. fumicolans'' enzymes, such as ''Tfu'' DNA polymerase have very high thermostability and represent typical bacterial adaptations to the stresses of extreme environments.</div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>==Genome and Phylogeny==</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>==Genome and Phylogeny==</div></td></tr>
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Luoiris
https://microbewiki.kenyon.edu/index.php?title=Thermococcus_fumicolans&diff=78934&oldid=prev
Luoiris: /* Enzyme structure and activity */
2012-12-15T05:56:03Z
<p><span dir="auto"><span class="autocomment">Enzyme structure and activity</span></span></p>
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<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td></tr>
<tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>The two [[intein]] genes, ''Pol-1'' and ''Pol-2'', of ''T. fumicolans'' [[DNA polymerase]] were shown to have [[endonuclease] activity after [[recombination]] into the [[<del style="font-weight: bold; text-decoration: none;">''</del>Escherichia coli''<del style="font-weight: bold; text-decoration: none;">]] </del>genome [6]. ''T. fumicolans'' possesses amylolytic enzymes that could be capable of degrading glycogetis from animal biomass. Fallen biomass and other detritus are readily available in hydrothermal vents, which generally lack vegetation [9]. The ''Tfu'' DNA polymerase found in ''T. fumicolans'' is more thermostable than ''Tli'' DNA polymerase and ''Taq'' polymerase, and can polymerize mammalian DNA at high temperatures. ''Tfu'' polymerase activity decreases at high temperatures but it is suggested that this is due to denaturing of substrate rather than polymerase instability [6].</div></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>The two [[intein]] genes, ''Pol-1'' and ''Pol-2'', of ''T. fumicolans'' [[DNA polymerase]] were shown to have [[endonuclease] activity after [[recombination]] into the <ins style="font-weight: bold; text-decoration: none;">''</ins>[[Escherichia coli<ins style="font-weight: bold; text-decoration: none;">]]</ins>'' genome [6]. ''T. fumicolans'' possesses amylolytic enzymes that could be capable of degrading glycogetis from animal biomass. Fallen biomass and other detritus are readily available in hydrothermal vents, which generally lack vegetation [9]. The ''Tfu'' DNA polymerase found in ''T. fumicolans'' is more thermostable than ''Tli'' DNA polymerase and ''Taq'' polymerase, and can polymerize mammalian DNA at high temperatures. ''Tfu'' polymerase activity decreases at high temperatures but it is suggested that this is due to denaturing of substrate rather than polymerase instability [6].</div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>==Biochemical applications==</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>==Biochemical applications==</div></td></tr>
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Luoiris
https://microbewiki.kenyon.edu/index.php?title=Thermococcus_fumicolans&diff=78933&oldid=prev
Luoiris: /* Enzyme structure and activity */
2012-12-15T05:55:28Z
<p><span dir="auto"><span class="autocomment">Enzyme structure and activity</span></span></p>
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<td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">Revision as of 05:55, 15 December 2012</td>
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<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>==Enzyme structure and activity==</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>==Enzyme structure and activity==</div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td></tr>
<tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>The two intein genes, ''Pol-1'' and ''Pol-2'', of ''T. fumicolans'' DNA polymerase were shown to have endonuclease activity after recombination into the ''Escherichia coli'' genome [6]. ''T. fumicolans'' possesses amylolytic enzymes that could be capable of degrading glycogetis from animal biomass. Fallen biomass and other detritus are readily available in hydrothermal vents, which generally lack vegetation [9]. The ''Tfu'' DNA polymerase found in ''T. fumicolans'' is more thermostable than ''Tli'' DNA polymerase and ''Taq'' polymerase, and can polymerize mammalian DNA at high temperatures. ''Tfu'' polymerase activity decreases at high temperatures but it is suggested that this is due to denaturing of substrate rather than polymerase instability [6].</div></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>The two <ins style="font-weight: bold; text-decoration: none;">[[</ins>intein<ins style="font-weight: bold; text-decoration: none;">]] </ins>genes, ''Pol-1'' and ''Pol-2'', of ''T. fumicolans'' <ins style="font-weight: bold; text-decoration: none;">[[</ins>DNA polymerase<ins style="font-weight: bold; text-decoration: none;">]] </ins>were shown to have <ins style="font-weight: bold; text-decoration: none;">[[</ins>endonuclease<ins style="font-weight: bold; text-decoration: none;">] </ins>activity after <ins style="font-weight: bold; text-decoration: none;">[[</ins>recombination<ins style="font-weight: bold; text-decoration: none;">]] </ins>into the <ins style="font-weight: bold; text-decoration: none;">[[</ins>''Escherichia coli''<ins style="font-weight: bold; text-decoration: none;">]] </ins>genome [6]. ''T. fumicolans'' possesses amylolytic enzymes that could be capable of degrading glycogetis from animal biomass. Fallen biomass and other detritus are readily available in hydrothermal vents, which generally lack vegetation [9]. The ''Tfu'' DNA polymerase found in ''T. fumicolans'' is more thermostable than ''Tli'' DNA polymerase and ''Taq'' polymerase, and can polymerize mammalian DNA at high temperatures. ''Tfu'' polymerase activity decreases at high temperatures but it is suggested that this is due to denaturing of substrate rather than polymerase instability [6].</div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>==Biochemical applications==</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>==Biochemical applications==</div></td></tr>
</table>
Luoiris
https://microbewiki.kenyon.edu/index.php?title=Thermococcus_fumicolans&diff=78932&oldid=prev
Luoiris: /* Ecology */
2012-12-15T05:54:23Z
<p><span dir="auto"><span class="autocomment">Ecology</span></span></p>
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<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td></tr>
<tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>''Thermococcus fumicolans'' is found in hydrothermal environments with anhydrite chimneys, and grows alongside ''Pyrococcus spp''. GB-D [5] and various methanogens, sulfate reducers and sulfur metabolizers [1]. ''Thermococcales'' have been shown to carry viral particles, which are important in controlling microbial populations in the ocean [12].</div></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>''Thermococcus fumicolans'' is found in <ins style="font-weight: bold; text-decoration: none;">[[</ins>hydrothermal environments<ins style="font-weight: bold; text-decoration: none;">]] </ins>with anhydrite chimneys, and grows alongside <ins style="font-weight: bold; text-decoration: none;">[[</ins>''Pyrococcus spp''.<ins style="font-weight: bold; text-decoration: none;">]] </ins>GB-D [5] and various <ins style="font-weight: bold; text-decoration: none;">[[</ins>methanogens<ins style="font-weight: bold; text-decoration: none;">]]</ins>, <ins style="font-weight: bold; text-decoration: none;">[[</ins>sulfate reducers<ins style="font-weight: bold; text-decoration: none;">]] </ins>and sulfur metabolizers [1]. ''Thermococcales'' have been shown to carry viral particles, which are important in controlling microbial populations in the ocean [12].</div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>==Enzyme structure and activity==</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>==Enzyme structure and activity==</div></td></tr>
</table>
Luoiris
https://microbewiki.kenyon.edu/index.php?title=Thermococcus_fumicolans&diff=78930&oldid=prev
Luoiris: /* References */
2012-12-15T05:50:58Z
<p><span dir="auto"><span class="autocomment">References</span></span></p>
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<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>12. Soler, N., Marguet, E., Verbavatz, J., and Forterre, P. 2008. Virus-like vesicles and extracellular DNA produced by hyperthermophilic archaea of the order Thermococcales. Res. In Microbiol. 159: 390-399</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>12. Soler, N., Marguet, E., Verbavatz, J., and Forterre, P. 2008. Virus-like vesicles and extracellular DNA produced by hyperthermophilic archaea of the order Thermococcales. Res. In Microbiol. 159: 390-399</div></td></tr>
<tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del style="font-weight: bold; text-decoration: none;"></del></div></td><td colspan="2" class="diff-side-added"></td></tr>
<tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del style="font-weight: bold; text-decoration: none;">[http://bahama.jgi-psf.org/prod/bin/microbes/pmarmed/home.pmarmed.cgi DOE Joint Genome Institute: ''Prochlorococcus marinus ''MED4 Genome Project Completed Genome]</del></div></td><td colspan="2" class="diff-side-added"></td></tr>
<tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del style="font-weight: bold; text-decoration: none;"></del></div></td><td colspan="2" class="diff-side-added"></td></tr>
<tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del style="font-weight: bold; text-decoration: none;">[http://bahama.jgi-psf.org/prod/bin/microbes/pmarmit/home.pmarmit.cgi DOE Joint Genome Institute: ''Prochlorococcus marinus'' MIT 9313 Genome Project Completed Genome]</del></div></td><td colspan="2" class="diff-side-added"></td></tr>
<tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del style="font-weight: bold; text-decoration: none;"></del></div></td><td colspan="2" class="diff-side-added"></td></tr>
<tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del style="font-weight: bold; text-decoration: none;">[http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11493920 Fuhrman, Jed A. & Douglas Capone. 2001. Nifty nanoplankton. Nature, 412: 593-594. ]</del></div></td><td colspan="2" class="diff-side-added"></td></tr>
<tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del style="font-weight: bold; text-decoration: none;"></del></div></td><td colspan="2" class="diff-side-added"></td></tr>
<tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del style="font-weight: bold; text-decoration: none;">[http://www.sb-roscoff.fr/Phyto/ProSS120/index.html Genome Project Home Page: ''Prochlorococcus marinus'' SS120]</del></div></td><td colspan="2" class="diff-side-added"></td></tr>
<tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del style="font-weight: bold; text-decoration: none;"></del></div></td><td colspan="2" class="diff-side-added"></td></tr>
<tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del style="font-weight: bold; text-decoration: none;">[http://www.genoscope.fr/externe/English/Projets/Projet_DR/DR.html Genoscope: ''Prochlorococcus marinus'' - complete genome]</del></div></td><td colspan="2" class="diff-side-added"></td></tr>
<tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del style="font-weight: bold; text-decoration: none;"></del></div></td><td colspan="2" class="diff-side-added"></td></tr>
<tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del style="font-weight: bold; text-decoration: none;">Goericke, R. et al. 2000. A novel niche for ''Prochlorococcus'' sp. in low-light suboxic environments in the Arabian Sea and the Eastern Tropical North Pacific. Deep-Sea Research, 47: 1183-1205.</del></div></td><td colspan="2" class="diff-side-added"></td></tr>
<tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del style="font-weight: bold; text-decoration: none;"></del></div></td><td colspan="2" class="diff-side-added"></td></tr>
<tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del style="font-weight: bold; text-decoration: none;">[http://www.whoi.edu/science/B/people/mhahn/Karl_2002.pdf Karl, David M. 2002. Hidden in a sea of microbes. Nature, 415: 590-591.]</del></div></td><td colspan="2" class="diff-side-added"></td></tr>
<tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del style="font-weight: bold; text-decoration: none;"></del></div></td><td colspan="2" class="diff-side-added"></td></tr>
<tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del style="font-weight: bold; text-decoration: none;">[http://www.sb-roscoff.fr/PROMOLEC/Scanlan_West_FEMS_2002.pdf Scanlan, David J. & Nyree J. West. 2002. Molecular ecology of the marine cyanobacterial genera ''Prochlorococcu''s and ''Synechococcus''. FEMS Microbiology Ecology, 40: 1-12.]</del></div></td><td colspan="2" class="diff-side-added"></td></tr>
<tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del style="font-weight: bold; text-decoration: none;"></del></div></td><td colspan="2" class="diff-side-added"></td></tr>
<tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del style="font-weight: bold; text-decoration: none;">[http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15828858&query_hl=1 Sullivan MB, Coleman ML, Weigele P, Rohwer F, Chisholm SW. Three Prochlorococcus cyanophage genomes: signature features and ecological interpretations.''PLoS biology.'' 2005 May;3(5):e144. Epub 2005 Apr 19.]</del></div></td><td colspan="2" class="diff-side-added"></td></tr>
</table>
Luoiris
https://microbewiki.kenyon.edu/index.php?title=Thermococcus_fumicolans&diff=78929&oldid=prev
Luoiris: /* Cell Structure, Metabolism and Growth */
2012-12-15T05:50:30Z
<p><span dir="auto"><span class="autocomment">Cell Structure, Metabolism and Growth</span></span></p>
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<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>==Cell Structure, Metabolism and Growth==</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>==Cell Structure, Metabolism and Growth==</div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td></tr>
<tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>''T. fumicolans'' is a Gram-negative coccus about 0.8 to 2 pm in diameter [1]. The cells are motile, possessing polar flagella, and grow in singles, pairs, or small clusters. </div></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>''T. fumicolans'' is a <ins style="font-weight: bold; text-decoration: none;">[[</ins>Gram-negative<ins style="font-weight: bold; text-decoration: none;">]] [[</ins>coccus<ins style="font-weight: bold; text-decoration: none;">]] </ins>about 0.8 to 2 pm in diameter [1]. The cells are motile, possessing polar <ins style="font-weight: bold; text-decoration: none;">[[</ins>flagella<ins style="font-weight: bold; text-decoration: none;">]]</ins>, and grow in singles, pairs, or small clusters. </div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>The cell envelope consists of two layers and contains glycerol ether lipids, 70% of which are diphytanyl glycerol ether, characteristic of Archaea. [1]. </div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>The cell envelope consists of two layers and contains glycerol ether lipids, 70% of which are diphytanyl glycerol ether, characteristic of Archaea. [1]. </div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td></tr>
<tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>''T. fumicolans'' is an obligate chemoorganoheterotroph and an anaerobe [3]. It grows on proteolysis products and various amino acids. Sulfur increases growth but is not required [1]. In the absence of other nutrients, ''T. fumicolans'' are characteristically adapted to grow on pyruvate alone. This ability has not been demonstrated in ''Thermococcus'' species other than ''T. fumicolans'' and ''T. litoralis'' [8] [1]. </div></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>''T. fumicolans'' is an obligate <ins style="font-weight: bold; text-decoration: none;">[[</ins>chemoorganoheterotroph<ins style="font-weight: bold; text-decoration: none;">]] </ins>and an anaerobe [3]. It grows on <ins style="font-weight: bold; text-decoration: none;">[[</ins>proteolysis<ins style="font-weight: bold; text-decoration: none;">]] </ins>products and various amino acids. Sulfur increases growth but is not required [1]. In the absence of other nutrients, ''T. fumicolans'' are characteristically adapted to grow on pyruvate alone. This ability has not been demonstrated in ''Thermococcus'' species other than ''T. fumicolans'' and ''T. litoralis'' [8] [1]. </div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td></tr>
<tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>''T. fumicolans'' grows at a temperature range of 73-100°C with the optimum being 85-90 °C, the highest of all known ''Thermococcus'' species [1]. Although it grows at a pH range of 4.5 to 9.5, the optimal pH is approximately 8. Beyond 100°C, ''T. fumicolans'' is no longer thermotolerant and cannot survive at any pH [5]. During growth phases, ''T. fumicolans'' can tolerate extreme acidity, pressure and temperature exceeding those of most hydrothermal vent environments. However, when substrates are lacking, survival is drastically decreased except under milder conditions [8]. ''T. fumicolans'' and hyperthermophiles such as ''M. jannaschii'' and ''A. profundus'' need energy and carbon sources even in non-growth stages, and are unlikely to become metabolically inactive. These extremophiles undergo active biosynthesis in order to survive in high-stress environments [5]. It is suggested that ''T. fumicolans'' divides by binary fission along the middle of the cell [1], and has a doubling time of less than 86 minutes [6].</div></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>''T. fumicolans'' grows at a temperature range of 73-100°C with the optimum being 85-90 °C, the highest of all known ''Thermococcus'' species [1]. Although it grows at a pH range of 4.5 to 9.5, the optimal pH is approximately 8. Beyond 100°C, ''T. fumicolans'' is no longer thermotolerant and cannot survive at any pH [5]. During growth phases, ''T. fumicolans'' can tolerate extreme acidity, pressure and temperature exceeding those of most hydrothermal vent environments. However, when substrates are lacking, survival is drastically decreased except under milder conditions [8]. ''T. fumicolans'' and hyperthermophiles such as <ins style="font-weight: bold; text-decoration: none;">[[</ins>''M. jannaschii''<ins style="font-weight: bold; text-decoration: none;">]] </ins>and <ins style="font-weight: bold; text-decoration: none;">[[</ins>''A. profundus''<ins style="font-weight: bold; text-decoration: none;">]] </ins>need energy and carbon sources even in non-growth stages, and are unlikely to become <ins style="font-weight: bold; text-decoration: none;">[[</ins>metabolically inactive<ins style="font-weight: bold; text-decoration: none;">]]</ins>. These <ins style="font-weight: bold; text-decoration: none;">[[</ins>extremophiles<ins style="font-weight: bold; text-decoration: none;">]] </ins>undergo active biosynthesis in order to survive in high-stress environments [5]. It is suggested that ''T. fumicolans'' divides by binary fission along the middle of the cell [1], and has a doubling time of less than 86 minutes [6].</div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[Image:Thermococcus_compare.png|thumb|300px|left| Diagram comparing optimal growth conditions for T. fumicolans and several related species. Data from sources [8] and [1]]]</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[Image:Thermococcus_compare.png|thumb|300px|left| Diagram comparing optimal growth conditions for T. fumicolans and several related species. Data from sources [8] and [1]]]</div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td></tr>
<tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>''T. fumicolans'' shows resistance to vancomycin, penicillin, kanamycin, streptomycin, and chloramphenicol, but is not resistant to rifampin at the same concentrations [1].</div></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>''T. fumicolans'' shows resistance to <ins style="font-weight: bold; text-decoration: none;">[[</ins>vancomycin<ins style="font-weight: bold; text-decoration: none;">]]</ins>, <ins style="font-weight: bold; text-decoration: none;">[[</ins>penicillin<ins style="font-weight: bold; text-decoration: none;">]]</ins>, <ins style="font-weight: bold; text-decoration: none;">[[</ins>kanamycin<ins style="font-weight: bold; text-decoration: none;">]]</ins>, <ins style="font-weight: bold; text-decoration: none;">[[</ins>streptomycin<ins style="font-weight: bold; text-decoration: none;">]]</ins>, and <ins style="font-weight: bold; text-decoration: none;">[[</ins>chloramphenicol<ins style="font-weight: bold; text-decoration: none;">]]</ins>, but is not resistant to <ins style="font-weight: bold; text-decoration: none;">[[</ins>rifampin<ins style="font-weight: bold; text-decoration: none;">]] </ins>at the same concentrations [1].</div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>==Ecology==</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>==Ecology==</div></td></tr>
</table>
Luoiris
https://microbewiki.kenyon.edu/index.php?title=Thermococcus_fumicolans&diff=78928&oldid=prev
Luoiris: /* Genome and Phylogeny */
2012-12-15T05:48:28Z
<p><span dir="auto"><span class="autocomment">Genome and Phylogeny</span></span></p>
<table style="background-color: #fff; color: #202122;" data-mw="interface">
<col class="diff-marker" />
<col class="diff-content" />
<col class="diff-marker" />
<col class="diff-content" />
<tr class="diff-title" lang="en">
<td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">← Older revision</td>
<td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">Revision as of 05:48, 15 December 2012</td>
</tr><tr><td colspan="2" class="diff-lineno" id="mw-diff-left-l30">Line 30:</td>
<td colspan="2" class="diff-lineno">Line 30:</td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>==Genome and Phylogeny==</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>==Genome and Phylogeny==</div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td></tr>
<tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>The genome of ''T. fumicolans'' has yet to be sequenced. Based on the 16S rRNA sequences, ''T. fumicolans'' is related to other ''Thermococcales'' species such as ''T. litoralis''. [1] The proliferating cell nuclear antigen (PCNA) of ''T. fumicolans'' is functionally conserved among hyperthermophiles, but is similar to that of mammals as well [7]. Members of the genus ''Thermococcus'' are sometimes found with large amounts of extracellular DNA in vesicles, thought to be of viral origin. These vesicles are effective in protecting DNA from thermal degradation and may be involved in horizontal gene transfer[12].</div></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>The genome of ''T. fumicolans'' has yet to be sequenced. Based on the 16S rRNA sequences, ''T. fumicolans'' is related to other <ins style="font-weight: bold; text-decoration: none;">[[</ins>''Thermococcales''<ins style="font-weight: bold; text-decoration: none;">]] </ins>species such as ''T. litoralis''. [1] The <ins style="font-weight: bold; text-decoration: none;">[[</ins>proliferating cell nuclear antigen<ins style="font-weight: bold; text-decoration: none;">]] </ins>(PCNA) of ''T. fumicolans'' is functionally conserved among hyperthermophiles, but is similar to that of mammals as well [7]. Members of the genus ''Thermococcus'' are sometimes found with large amounts of extracellular DNA in vesicles, thought to be of viral origin. These vesicles are effective in protecting DNA from thermal degradation and may be involved in <ins style="font-weight: bold; text-decoration: none;">[[</ins>horizontal gene transfer<ins style="font-weight: bold; text-decoration: none;">]]</ins>[12].</div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[Image:Phylogeny_tfu.png|thumb|300px| Phylogenetic tree showing the genus Thermococcus. Adapted from source [1].]]</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[Image:Phylogeny_tfu.png|thumb|300px| Phylogenetic tree showing the genus Thermococcus. Adapted from source [1].]]</div></td></tr>
</table>
Luoiris
https://microbewiki.kenyon.edu/index.php?title=Thermococcus_fumicolans&diff=78927&oldid=prev
Luoiris: /* Cell Structure, Metabolism and Growth */
2012-12-15T05:47:40Z
<p><span dir="auto"><span class="autocomment">Cell Structure, Metabolism and Growth</span></span></p>
<table style="background-color: #fff; color: #202122;" data-mw="interface">
<col class="diff-marker" />
<col class="diff-content" />
<col class="diff-marker" />
<col class="diff-content" />
<tr class="diff-title" lang="en">
<td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">← Older revision</td>
<td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">Revision as of 05:47, 15 December 2012</td>
</tr><tr><td colspan="2" class="diff-lineno" id="mw-diff-left-l45">Line 45:</td>
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<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td></tr>
<tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>[[Image:<del style="font-weight: bold; text-decoration: none;">Sbr</del>.<del style="font-weight: bold; text-decoration: none;">jpg</del>|thumb|300px|left| Diagram comparing optimal growth conditions for T. fumicolans and several related species. Data from sources [8] and [1]]]</div></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>[[Image:<ins style="font-weight: bold; text-decoration: none;">Thermococcus_compare</ins>.<ins style="font-weight: bold; text-decoration: none;">png</ins>|thumb|300px|left| Diagram comparing optimal growth conditions for T. fumicolans and several related species. Data from sources [8] and [1]]]</div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>''T. fumicolans'' shows resistance to vancomycin, penicillin, kanamycin, streptomycin, and chloramphenicol, but is not resistant to rifampin at the same concentrations [1].</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>''T. fumicolans'' shows resistance to vancomycin, penicillin, kanamycin, streptomycin, and chloramphenicol, but is not resistant to rifampin at the same concentrations [1].</div></td></tr>
</table>
Luoiris
https://microbewiki.kenyon.edu/index.php?title=Thermococcus_fumicolans&diff=78924&oldid=prev
Luoiris: /* Genome and Phylogeny */
2012-12-15T05:46:22Z
<p><span dir="auto"><span class="autocomment">Genome and Phylogeny</span></span></p>
<table style="background-color: #fff; color: #202122;" data-mw="interface">
<col class="diff-marker" />
<col class="diff-content" />
<col class="diff-marker" />
<col class="diff-content" />
<tr class="diff-title" lang="en">
<td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">← Older revision</td>
<td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">Revision as of 05:46, 15 December 2012</td>
</tr><tr><td colspan="2" class="diff-lineno" id="mw-diff-left-l32">Line 32:</td>
<td colspan="2" class="diff-lineno">Line 32:</td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>The genome of ''T. fumicolans'' has yet to be sequenced. Based on the 16S rRNA sequences, ''T. fumicolans'' is related to other ''Thermococcales'' species such as ''T. litoralis''. [1] The proliferating cell nuclear antigen (PCNA) of ''T. fumicolans'' is functionally conserved among hyperthermophiles, but is similar to that of mammals as well [7]. Members of the genus ''Thermococcus'' are sometimes found with large amounts of extracellular DNA in vesicles, thought to be of viral origin. These vesicles are effective in protecting DNA from thermal degradation and may be involved in horizontal gene transfer[12].</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>The genome of ''T. fumicolans'' has yet to be sequenced. Based on the 16S rRNA sequences, ''T. fumicolans'' is related to other ''Thermococcales'' species such as ''T. litoralis''. [1] The proliferating cell nuclear antigen (PCNA) of ''T. fumicolans'' is functionally conserved among hyperthermophiles, but is similar to that of mammals as well [7]. Members of the genus ''Thermococcus'' are sometimes found with large amounts of extracellular DNA in vesicles, thought to be of viral origin. These vesicles are effective in protecting DNA from thermal degradation and may be involved in horizontal gene transfer[12].</div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td></tr>
<tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>[[Image:Phylogeny_tfu.png|thumb|300px|<del style="font-weight: bold; text-decoration: none;">left </del>Phylogenetic tree showing the genus Thermococcus. Adapted from source [1].]]</div></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>[[Image:Phylogeny_tfu.png|thumb|300px| Phylogenetic tree showing the genus Thermococcus. Adapted from source [1].]]</div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>==Cell Structure, Metabolism and Growth==</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>==Cell Structure, Metabolism and Growth==</div></td></tr>
</table>
Luoiris