Tomato black ring virus: Difference between revisions

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==Cell structure and metabolism==
==Cell structure and metabolism==
Interesting features of cell structure; how it gains energy; what important molecules it produces.
Interesting features of cell structure; how it gains energy; what important molecules it produces.


==Ecology==
==Ecology==

Revision as of 07:19, 17 December 2008

A Microbial Biorealm page on the genus Tomato black ring virus

Classification

Higher order taxa

Virus; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Picornavirales; Comoviridae; Nepovirus; Subgroup B

Description and Significance

Tomato Black Ring Virus (TBRV) is a RNA-containing virus that occurs in Europe. It infects a wide range of herbaceous and wood monocotyledonous and dicotyledonous species including many that are important crop plants. In addition to black ring of tomato, the various strains of this virus cause ringspot diseases of bean, sugarbeet, lettuce, raspberry and strawberry, yellow vein of celery,shoot-stunting of peach and unnamed diseases of leek and onion. It occurs in many other plants, including cabbae, grapevine and lucerne. Plants infected with TBRV are patchily distributed in crops because of slow migration of the soil-inhabiting vectors, Longidorus spp. Some strains tend to occure in soils together with strains of raspberry ringspot virus because they share the vector L. elongatus.

Genome structure

The TBRV has isometric particles 28 nm in diameter with hexagonal outlines. In purified preparations particles exist as three sedimenting components with sedimentation coefficients (S20,w) of 55S, 97S and 121S, termed T, M and B, respectively. All particles consist of 60 protein subunits each of molecular weight 57 000 but, whereas T particles are nucleic acid-free protein shells, M and B particles contain linear ssRNA with molecular weight of 1.7 x 10^6 and 2.7 x 10^6, respectively. Some virus isolates contain in addition a satellite RNA of molecular weight 0.5 x 10^6. Several different satellites have been described for different TBRV isolates.

The complete sequence genome for TBRV RNA1 and RNA 2 has been sequenced. The sequence of TBRV RNA 1 is 7356 nucleotides long. A putative initiation codon at nucleotide 261 was considered to be the start of an open reading frame which terminates at a UAG codon at position 7053. The sequence of TBRV RNA 2 is 4618 nucleotides long and contains an open reading frame endcoding a polypeptide of 1344 amino acids.

Cell structure and metabolism

Interesting features of cell structure; how it gains energy; what important molecules it produces.

Ecology

Habitat; symbiosis; contributions to the environment.

Pathology

How does this organism cause disease? Human, animal, plant hosts? Virulence factors, as well as patient symptoms.

Current Research

Enter summarries of the most rescent research here--at least three required

References

[Sample reference] Takai, K., Sugai, A., Itoh, T., and Horikoshi, K. "Palaeococcus ferrophilus gen. nov., sp. nov., a barophilic, hyperthermophilic archaeon from a deep-sea hydrothermal vent chimney". International Journal of Systematic and Evolutionary Microbiology. 2000. Volume 50. p. 489-500.

Edited by student of Emily Lilly at University of Massachusetts Dartmouth.