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| | ==Microbial Ecology Earth 373 MicrobeWiki Page Template== |
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| ==Overview== | | ==Overview== |
| <br>By [Jonathan Murray]<br>
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| <br> Nowhere is the resilience of life quite on display like it is near and on the Black Smokers. “Black Smokers” are hydrothermal vents found at sights of tectonic ridges and seafloor spreading, and spew jets of intensely hot chemically-laden fluids <ref name=a1>US Department of Commerce, & National Oceanic and Atmospheric Administration. (2009, February 1). What is a hydrothermal vent? Retrieved from https://oceanservice.noaa.gov/facts/vents.html</ref>. Devoid of light, scarce of oxygen, and crushed under intense pressure from the ocean above, such an environment appears uninhabitable to our standards. Nevertheless, a diverse group of microbes and microbes have managed to make black smokers their home, taking advantage of the heat, inorganic compounds, and even the radiation of the superheated rock to sustain themselves<ref name=a2>Gazda, Lyndsy. (2016) The Microbes that Keep Hydrothermal Vents Pumping. Smithsonian Museum, March 2016. https://ocean.si.edu/ecosystems/deep-sea/microbes-keep-hydrothermal-vents-pumping</ref>. The microbes found at black smokers are known as “extremophiles” for the ability to thrive in places otherwise lethal to other forms of life, thanks in part to physiological processes and enzymes able to function under harsh conditions such as intense heat, known collectively as “extremozymes”<ref name=a3>US Department of Commerce, & National Oceanic and Atmospheric Administration. (2008, February 1). What is an extremophile? Retrieved from https://oceanservice.noaa.gov/facts/extremophile.html</ref>. These microbes form both the principal primary production of the environment through chemoautotrophy, and some forms of photoautotrophy, and are essential to the survival of several of the macro-organisms discovered at the black smokers<ref name=a2/>. In fact, the ability of these microbes to sustain life under such conditions have led many microbiologists to theorize that the ecology of black smokers may reflect some of the earliest stages of life on earth <ref name=a4>Martin, William et al (2008). Hydrothermal vents and the origin of life. Nature Review, vol. 6, p. 805-814.</ref>.<br><br>.
| | [[Image:PHIL_1181_lores.jpg|thumb|300px|right|Electron micrograph of the Ebola Zaire virus. This was the first photo ever taken of the virus, on 10/13/1976. By Dr. F.A. Murphy, now at U.C. Davis, then at the [http://www.cdc.gov/ CDC].]] |
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| | <br>By [My Name-- PLEASE do this first!]<br> |
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| | <br>At right is a sample image insertion. It works for any image uploaded anywhere to MicrobeWiki.<br><br>The insertion code consists of: |
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| | <br><b>Double brackets:</b> [[ |
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| | <br><b>Filename:</b> PHIL_1181_lores.jpg |
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| | <br><b>Thumbnail status:</b> |thumb| |
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| | <br><b>Pixel size:</b> |300px| |
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| | <br><b>Placement on page:</b> |right| |
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| | <br><b>Legend/credit:</b> Electron micrograph of the Ebola Zaire virus. This was the first photo ever taken of the virus, on 10/13/1976. By Dr. F.A. Murphy, now at U.C. Davis, then at the [http://www.cdc.gov/ CDC]. Every image requires a link to the source. |
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| | <br><b>Closed double brackets:</b> ]] |
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| | <br><br>Other examples: |
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| | <br><b>Bold</b> |
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| | <br><i>Italic</I> |
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| | <br><b>Subscript:</b> H<sub>2</sub>O |
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| | <br><b>Superscript:</b> Fe<sup>3+</sup> |
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| ==Environment of Black Smokers==
| | <br>Introduce environment. Give key information relevant to the microbial ecology of the environment. <br> |
| The key to the formation of black smokers, and subsequently their surrounding ecology, is sea-floor spreading. When the tectonic plates of earth’s crusts are shifted, pulled, and moved thanks to the (modeled) convection currents of earth’s asthenosphere, at some boundaries between plates the crust diverges, allowing intensely hot magma to surge upward from below the earth’s surface. This forms a tectonic boundary known as a ridge[5]. At the ocean floor, these ridges are referred to as mid-ocean ridges, and when seawater enters the ridge and mixes with the super-heated magma, it produces a hydrothermal fluid which builds significant pressure until erupting off the ocean floor like an underwater gyre[6]. This hydrothermal fluid can be further cooled by the seawater, resulting in mineral deposition that forms the characteristic chimney-like structures of the black smokers. The vents which create black smokers tend to be hotter, anoxic, acidic and sulfurous[8], producing the characteristic black color and structures that can reach as high as 180 feet. By contrast, the vents which produce the sibling of the black smokers, the white smokers, tend to have cooler plumes rich in barium, calcium, and silicon [5]. In general, the seafloor itself is devoid of sunlight and suffers from immense pressure. At the Juan de Fuca Ridge in the Pacific Ocean, the hydrothermal vents discovered there experience an equivalent pressure of 250 atmosphere, or as one author puts it, the same pressure as one would experience from an elephant standing on their big toe[7]. The “extreme” of the black smokers also applies to their temperature gradients; the superheated fluids and rock of the vents surrounding by the serious cold of the deep ocean can range from near 0 to 400oC. With conditions like these, scientists assumed that no life could survive here until exploration of ridges in the late 1970s revealed hundreds of previously unknown species[5]. The microbes which make the black smokers their home are well adapted to use the heat, radiation, and anoxic chemical-laden fluids of the smokers to drive their food production, and subsequently support a “biological oasis”[6].<br>
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| <br> | | <ref>[http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3847443/ Bartlett et al.: Oncolytic viruses as therapeutic cancer vaccines. Molecular Cancer 2013 12:103.]</ref> |
| Every point of information REQUIRES CITATION using the citation tool shown above. | | |
| | <br><br>A citation code consists of a hyperlinked reference within "ref" begin and end codes. |
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| | <br>To repeat the citation for other statements, the reference needs to have a names: "<ref name=aa>” |
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| | <br> The repeated citation works like this, with a back slash.<ref name=aa/> |
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| | ==Detailed Environmental Description== |
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| | Describe the physical and geochemical environment that you are reporting on. How well is has this been studied? Is it current or is most of the work from the 80s? What are the geochemical characteristics? Include some current research, with at least one figure showing data.<br> |
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| | <br> Every point of information REQUIRES CITATION using the citation tool shown above. |
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| | ==Overview of Microbial Ecology as it is known== |
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| | Discuss the alpha and beta diversity of the system. Include some current research, with at least one figure showing data.<br> |
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| | ==Expansion topic 1-3== |
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| | How you expand upon the basics will depend on your environment. Pick a couple or three of interesting subtopics and describe them in detail. Include some current research, with at least one figure showing data.<br> |
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| ==Microbial Diversity of Black Smokers: Taxonomy==
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| As described above, the microbial communities of black smokers can reach high levels of species diversity, but are mostly dominated by prokaryotic members. Generally speaking, prokaryotic communities can be found in more structured mats or in free-living populations, and several phyla of hyperthermophilic archaea can be found on or within the black smokers themselves, while a mix of thermophilic archaea and bacteria species can be found in the cooler gradients surrounding the chimneys[8]. Studies revealed that amongst the sequenced populations proteobacteria and euryarchaeota were the best represented phylum[6][8]. Amongst these phyllum, the Epsilonproteobacteria and the Archaeoglobus/Thermococcus/Methanococcus archaea were the most heavily represented class[6]. Given their adaptation to extreme environments, most microbial species from black smokers are currently uncultivable; study is primarily done through DNA sequencing analysis of the 16S rRNA gene and organic geochemical techniques such as analyzing samples of lipid biomarkers[8].<br>
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| ==Microbial Diversity of Black Smokers: Metabolic Diversity== | | ==Key Microbial Players== |
| Amongst the black smoker microbes, the anoxic hydrothermal fluids, lack of solar light, and the inorganic chemical deposits and solutes mean the vast majority of black smoker microbes are anaerobic chemoautotrophs, either employing sulfate reducing or methane-based metabolic processes. Within the chimney’s themselves, the hyperthermophilic archaea’s are primarily methanogens, performing autotrophic reduction of carbon dioxide coupled with hydrogen oxidation[6]. Outside the chimneys where the thermal gradient cools, the iron sulfide compounds heavy in concentration in the chimney’s hydrothermal fluids and deposits support a community of sulfide and metal oxidizers, as well as other methanogens[6]. However, evidence supports the presence of some unique metabolisms as well. Several species of thermophilic archaea with heterotrophic metabolisms have been isolated as well, though they too employ sulfur-based or iron-based reductions[8]. Even more unique, some microbes with phototrophic capabilities as well; one sulfur-oxidizing bacterium was found to also be able to engage in phototrophic metabolisms by using the blackbody radiation of the superheated vent rock[6]. <br><br>
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| ==Symbionts of the Black Smokers==
| | In all of your systems there will be at least a couple of key microbial players. Describe these in detail. Where do they fall on the tree of life? Are they cultured? What do they do in general and as it relates to your target environment?<br> |
| While important, even essential macro-micro biological relationships can be found in all environments, no where is the necessity of a metabolic symbiosis better represented than in the macro-organisms and their microbe partners that inhabit the black smokers. For example, Riftia Pachyptila is a worm which has evolved to endure remarkable levels of hydrogen sulfide and other extreme conditions found near the black smokers; its survival depends on its symbiosis with sulfide oxidizers. The worms blood stream carries hydrogen sulfide and oxygen, whose otherwise spontaneous reaction is inhibited with HS- binding proteins. The bacteria within then perform its chemoautotrophic function, providing energy for itself and the worm. This symbiosis is so singularly crucial to the worm’s survival that it has sense lost all recognizable ingestive and digestive morphological features, with the “trophosome” tissue which houses its symbionts estimated at approximately sixty percent of its biomass[10]. Another worm, Alvinella Pompejana, boasts the record of one of the most thermally resilient macro life forms on the planet, making its home right on the chimney walls. It achieves its thermal miracle with hair like projections that house epsilonproteobacteria who provide insulating, heat resisting services to the worm[11]. Finally, one other charismatic example of symbiosis comes from the Yeti Crab. Mobile enough to seek out optimal temperature gradients, these crabs also have hairs along their claws, which they wave around the vents and hydrothermal fluids of the black smokers. This motion helps stir up the rich quantities of methane and hydrogen sulfide solutes, that the chemoautotrophic bacteria then utilize in anaerobic oxidation[12]. <br>
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| ==Black Smokers: A Reflection of the Origin of Life?==
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| Given the resilience of the microbial life found near black smokers, and the relatively early positions of its members on the archaea branch of the phylogenic tree of life[6], some intersection of geologic and biologic study may suggest that the ecology of hydrothermal vents may help unlock the mysteries surrounding the origins of life on earth. The metabolisms of the black smoker microbes, i.e its ability to utilize methane, carbon dioxide, metals, and sulfur all correlate to what study suggests may have been the most readily available reducible compounds, given their origin within the Earth’s mantle as opposed to the atmosphere or even space[13]. Hydrothermal vents are believed to have emerged almost as soon as liquid water first collected on earth, with examples of fossilized black smokers and correlated evidence of fauna and microfossils at sites estimated to be as old as 3.5 billion years[13]. Essentially, the ability of black smoker communities to thrive under conditions that long predated the metabolic pathways we know support terrestrial and surface ecosystems have unlocked a new potential avenue in learning of the complex interplay between Earth’s geological and biological history. <br>
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| ==Conclusion== | | ==Conclusion== |
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| Lacking light and suffering from immense pressure and drastic temperature gradients, Black Smoker hydrothermal vents have still cultivated a diverse and stunning ecosystem thanks to a foundation of extremophiles who can employ specialized proteins and enzymes to metabolize the anoxic inorganic compounds which surge through into the ocean from deep beneath the Earth's surface. Their relative mystery and resilience has brought them enormous attention and study since their discovery in the late 1970s, and further improvement of technique and research may one day reveal that it may be just as important to refer to black smokers as one of the original environments, not just one of the more extreme. <br><br>
| | ==References== |
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| ==References==
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| <references /> | | <references /> |
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| <br><br>Authored for Earth 373 Microbial Ecology, taught by [mailto:maggie@northwestern.edu Magdalena Osburn], 2020, [https://www.earth.northwestern.edu/ NU Earth Page]. | | <br><br>Authored for Earth 373 Microbial Ecology, taught by [mailto:maggie@northwestern.edu Magdalena Osburn], 2020, [https://www.earth.northwestern.edu/ NU Earth Page]. |
Microbial Ecology Earth 373 MicrobeWiki Page Template
Overview
Electron micrograph of the Ebola Zaire virus. This was the first photo ever taken of the virus, on 10/13/1976. By Dr. F.A. Murphy, now at U.C. Davis, then at the
CDC.
By [My Name-- PLEASE do this first!]
At right is a sample image insertion. It works for any image uploaded anywhere to MicrobeWiki.
The insertion code consists of:
Double brackets: [[
Filename: PHIL_1181_lores.jpg
Thumbnail status: |thumb|
Pixel size: |300px|
Placement on page: |right|
Legend/credit: Electron micrograph of the Ebola Zaire virus. This was the first photo ever taken of the virus, on 10/13/1976. By Dr. F.A. Murphy, now at U.C. Davis, then at the CDC. Every image requires a link to the source.
Closed double brackets: ]]
Other examples:
Bold
Italic
Subscript: H2O
Superscript: Fe3+
Introduce environment. Give key information relevant to the microbial ecology of the environment.
[1]
A citation code consists of a hyperlinked reference within "ref" begin and end codes.
To repeat the citation for other statements, the reference needs to have a names: "<ref name=aa>”
The repeated citation works like this, with a back slash.[2]
Detailed Environmental Description
Describe the physical and geochemical environment that you are reporting on. How well is has this been studied? Is it current or is most of the work from the 80s? What are the geochemical characteristics? Include some current research, with at least one figure showing data.
Every point of information REQUIRES CITATION using the citation tool shown above.
Overview of Microbial Ecology as it is known
Discuss the alpha and beta diversity of the system. Include some current research, with at least one figure showing data.
Expansion topic 1-3
How you expand upon the basics will depend on your environment. Pick a couple or three of interesting subtopics and describe them in detail. Include some current research, with at least one figure showing data.
Key Microbial Players
In all of your systems there will be at least a couple of key microbial players. Describe these in detail. Where do they fall on the tree of life? Are they cultured? What do they do in general and as it relates to your target environment?
Conclusion
References
Authored for Earth 373 Microbial Ecology, taught by Magdalena Osburn, 2020, NU Earth Page.
