Bacillus infernus: Difference between revisions

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{{Uncurated}}
{{Uncurated}}
<center>[[Image:infernus.jpeg‎|frame|center|300x|link=http://geoweb.princeton.edu/research/geomicrobio/bacteria.html|alt=alt|'''''Bacillus infernus''''']]<br>''Thin-section electron micrograph of Bacillus infernus, sp. nov., isolated from ca. 2.7 km below land surface in the Taylorsville Basin. These new species proposed <Br>by D. R. Boone et. al (1995) are thermophilic, halotolerant, and Fe(III)- and Mn(IV)-reducing anaerobes.  Photo from [http://geoweb.princeton.edu/research/geomicrobio/bacteria.html geoweb.princeton.edu]''</center>
<center>[[Image:infernus.jpeg‎|frame|center|300x|link=http://geoweb.princeton.edu/research/geomicrobio/bacteria.html|alt=alt|'''''Bacillus infernus''''']]<br>''Thin-section electron micrograph of Bacillus infernus, sp. nov., isolated from ca. 2.7 km below land surface in the Taylorsville Basin. These new species (Th-22 and TH-23) proposed <Br>by D. R. Boone et. al (1995) are thermophilic, halotolerant, and Fe(III)- and Mn(IV)-reducing anaerobes.  Photo from [http://geoweb.princeton.edu/research/geomicrobio/bacteria.html geoweb.princeton.edu]''</center>
{{Biorealm Genus}}
{{Biorealm Genus}}
[[Image:infernusphylotree.png|thumb|upright 1.0|Border|right|Alignment|Size|link=http://www.ncbi.nlm.nih.gov/pubmed/8590670|alt=Alt|Phylogenetic tree for strains TH-22 and TH-23 and 34 selected species of eubacteria,based on a distance matrix analysis [http://www.ncbi.nlm.nih.gov/pubmed/8590670 1.].]]
[[Image:infernusphylotree.png|thumb|upright 1.0|Border|right|Alignment|Size|link=http://www.ncbi.nlm.nih.gov/pubmed/8590670|alt=Alt|Phylogenetic tree for strains TH-22 and TH-23 and 34 selected species of eubacteria, based on a distance matrix analysis [http://www.ncbi.nlm.nih.gov/pubmed/8590670 1.].]]




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==Genomic information==
==Genomic information==
16S rDNA partial sequencing of two anaerobic strains (Th-22 and TH-23) have been studied via PCR amplification. The isolated portion contains nearly the entire gene; approximately 1500 base segments[1][2].  The study concluded ''B. infernus'' should be classified as a new ''Bacillus'' species based on RDP database information[1][2][3][4].
16S rDNA partial sequencing of two anaerobic strains (Th-22 and TH-23) have been studied via PCR amplification. The isolated portion contains nearly the entire gene; approximately 1500 base segments[1][2].  The study concluded ''B. infernus'' should be classified as a new ''Bacillus'' species based on RDP database information[1][2][3][4]. In 2002, the SPlB (partial cds) and RecA genes (partial cds) were sequenced[6][7].
[[Image:andromeda.jpg|thumb|upright 1.5|Border|right|Alignment|Size|link=http://en.wikipedia.org/wiki/The_Andromeda_Strain_(2008_miniseries)|alt=Alt|Tests with ''B. infernus'' reveal that the bacterium easily consumes and destroys Andromeda because of Andromeda's sulfur structure....SCIENTIFIC?? NO!!! BUT FUN?? YES!!!  Photo from [http://en.wikipedia.org/wiki/The_Andromeda_Strain_(TV_miniseries) Wikipedia].]]
[[Image:andromeda.jpg|thumb|upright 1.5|Border|right|Alignment|Size|link=http://en.wikipedia.org/wiki/The_Andromeda_Strain_(2008_miniseries)|alt=Alt|Tests with ''B. infernus'' reveal that the bacterium easily consumes and destroys Andromeda because of Andromeda's sulfur structure....SCIENTIFIC?? NO!!! BUT thought-provoking and FUN?? YES!!!  <Br>Photo from [http://en.wikipedia.org/wiki/The_Andromeda_Strain_(TV_miniseries) Wikipedia].]]


==Cell and colony structure==
==Cell and colony structure==
Cells are Rod shaped.  Dimensions are 0.7μm X 0.8μm in width by 4.0μm X 8.0μm in length.  Endospores seem possible but as yet undetermined.  Colony growth is pinpoint[1].
These gram-positive cells are non-motile rods.  Dimensions are 0.7μm X 0.8μm in width by 4.0μm X 8.0μm in length.  Endospores seem possible but as yet undetermined.  Colony growth is pinpoint[1].


==Metabolism==
==Metabolism==
''B. infernus'' is strictly anaerobic. It's the only strict anaerobe known of the ''Bacillus'' genus. Growth is fermentative utilizing glucose or respiratory using formate, lactate, MnO<sub>2</sub>, FE<sup>3+</sup>, trimethylamine oxide, and nitrate as electron donors. Nitrate is reduced to nitrite but is fermentative utilizing glucose or respiratory using formate, lactate, MnO<sub>2</sub>, Fe<sup>3+</sup>, trimethylamine oxide, and nitrate as electron donors. Nitrate is reduced to nitrite but not further reduced to ammonia or N<sub>2</sub>  
''B. infernus'' is strictly anaerobic. It's the only strict anaerobe known of the ''Bacillus'' genus. Growth is fermentative utilizing glucose or respiratory using formate, lactate, MnO<sub>2</sub>, Fe<sup>3+</sup>, trimethylamine oxide, and nitrate as electron donors. Nitrate is reduced to nitrite but not further reduced to ammonia or N<sub>2</sub>.
:"Metal reduction by thermophilic organisms is of great interest for specific reasons. First, hydrothermal systems are often considered modern analogs of the ancient Earth’s biosphere, and Fe(III) reduction could have been an important process on early Earth.  Second, metal-microbe interaction is relevant undertaking the search for life on other planets.  Magnetite, a product of microbial reduction of iron, may constitute a robust bio-marker that may have survived through later stages of alteration.  Third, metal reduction by thermophilic organisms is intimately connected to human life, such as bioremediation of heavy metals and radionuclides in abandoned nuclear facilities and landfill sites"[5].</div>
:"Metal reduction by thermophilic organisms is of great interest for a number of reasons. First, hydrothermal systems are often considered modern analogs of the ancient Earth’s biosphere, and Fe(III) reduction could have been an important process on early Earth.  Second, the study of metal-microbe interaction is relevant when undertaking the search for life on other planets.  Magnetite, a product of microbial reduction of iron, may constitute a robust bio-marker that may have survived through later stages of alteration.  Third, metal reduction by thermophilic organisms is intimately connected to human life, such as bioremediation of heavy metals and radionuclides in abandoned nuclear facilities and landfill sites"[5].


==Ecology==
==Ecology==
Deep terrestrial subsurface; Known samples obtained from depths of 2.65 to 2.77 km in the Taylorsville Triassic basin, Virginia.  ''Bacillus infernus'' is thermophilic (61ºC), halotolerant (0.6 M  
Deep terrestrial subsurface; Known samples obtained from depths of 2.65 to 2.77 km in the Taylorsville Triassic basin, Virginia.  ''Bacillus infernus'' is thermophilic (61ºC), halotolerant (0.6 M  
Na<sup>+</sup>), and very slightly alkaliphilic (pH 7.3 to 7.8) [1].  Parenthesis denote optimum conditions.
Na<sup>+</sup>), and very slightly alkaliphilic (pH 7.3 to 7.8) [1].  Parenthesis denote optimal conditions.


==References==
==References==
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http://www.ncbi.nlm.nih.gov/pubmed/8590670
http://www.ncbi.nlm.nih.gov/pubmed/8590670


[2]Boone, D. R., Liu, Y., Zhao, Z. J., Balkwill, D. L., Drake, D. R., Stevens, T. O., & Aldrich, H. C. (2009, March 05). ''Bacillus infernus'' strain TH-23 16s ribosomal rna, partial sequence. Retrieved from http://www.ncbi.nlm.nih.gov/nuccore/NR_027227.
[2]Boone, D. R., Liu, Y., Zhao, Z. J., Balkwill, D. L., Drake, D. R., Stevens, T. O., & Aldrich, H. C. (2009, March 05). ''Bacillus infernus'' strain TH-23 16s ribosomal RNA, partial sequence. Retrieved from http://www.ncbi.nlm.nih.gov/nuccore/NR_027227.


[3]Balkwill D.L.,''Bacillus infernus'' TH-22 16s small subunit rRNA gene, partial sequence. (1995, May 18). Retrieved from http://www.ebi.ac.uk/ena/data/view/U20384
[3]Balkwill D.L.,''Bacillus infernus'' TH-22 16s small subunit rRNA gene, partial sequence. (1995, May 18). Retrieved from http://www.ebi.ac.uk/ena/data/view/U20384
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[5]Dong, H. L., & Yu, B. S. (2007). Geomicrobiological processes in extreme environments: A review. (3rd ed., Vol. 30, pp. 202-216). China: International Union of Geological Sciences. Retrieved from http://home.dgeo.uevora.pt/~pedro/FCT/29.pdf
[5]Dong, H. L., & Yu, B. S. (2007). Geomicrobiological processes in extreme environments: A review. (3rd ed., Vol. 30, pp. 202-216). China: International Union of Geological Sciences. Retrieved from http://home.dgeo.uevora.pt/~pedro/FCT/29.pdf
[6]Maughan, H., Birky, C. W., Nicholson, W. L., Rosenzweig, W. D., & Vreeland, R. H. (2002, October 22). ''Bacillus infernus'' SplB (splB) gene, partial cds. Retrieved from http://www.ncbi.nlm.nih.gov/nuccore/AY147919.1
[7]Maughan, H., Birky, C. W., Nicholson, W. L., Rosenzweig, W. D., & Vreeland, R. H. (2002, October 22). ''Bacillus infernus'' RecA (recA) gene, partial cds. Retrieved from http://www.ncbi.nlm.nih.gov/nuccore/AY147926.1




Edited by Matt Flynn, a student of Dr. Lisa R. Moore, University of Southern Maine, Department of Biological Sciences, http://www.usm.maine.edu/bio
Edited by Matt Flynn, a student of Dr. Lisa R. Moore, University of Southern Maine, Department of Biological Sciences, http://www.usm.maine.edu/bio

Latest revision as of 16:55, 2 May 2012

This student page has not been curated.
alt
Bacillus infernus

Thin-section electron micrograph of Bacillus infernus, sp. nov., isolated from ca. 2.7 km below land surface in the Taylorsville Basin. These new species (Th-22 and TH-23) proposed
by D. R. Boone et. al (1995) are thermophilic, halotolerant, and Fe(III)- and Mn(IV)-reducing anaerobes. Photo from geoweb.princeton.edu

A Microbial Biorealm page on the genus Bacillus infernus

Alt
Phylogenetic tree for strains TH-22 and TH-23 and 34 selected species of eubacteria, based on a distance matrix analysis 1..


Higher order taxa

Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus

Species

Bacillus infernus, a hyperthermophile, found 2.65-2.77 km beneath the Earth's surface.
Photo courtesy of US Department of Energy- Subsurface Microbial Collection.

Bacillus infernus

Nonmotile rods (including possible yet unconfirmed endospores) inhabiting the deep terrestrial subsurface of the Taylorsville, Virginia Triassic Basin. The organism is thermophilic, halotolerant, and slightly alkaliphilic. B. infernus is important because it can affect geochemical processes including transport of toxic chemicals similar to other subsurface microorganisms. B. infernus also possesses a “novel” metabolism perhaps useful in future bioremediation of the environment, biotechnology, and industry[1].

Genomic information

16S rDNA partial sequencing of two anaerobic strains (Th-22 and TH-23) have been studied via PCR amplification. The isolated portion contains nearly the entire gene; approximately 1500 base segments[1][2]. The study concluded B. infernus should be classified as a new Bacillus species based on RDP database information[1][2][3][4]. In 2002, the SPlB (partial cds) and RecA genes (partial cds) were sequenced[6][7].

Alt
Tests with B. infernus reveal that the bacterium easily consumes and destroys Andromeda because of Andromeda's sulfur structure....SCIENTIFIC?? NO!!! BUT thought-provoking and FUN?? YES!!!
Photo from Wikipedia.

Cell and colony structure

These gram-positive cells are non-motile rods. Dimensions are 0.7μm X 0.8μm in width by 4.0μm X 8.0μm in length. Endospores seem possible but as yet undetermined. Colony growth is pinpoint[1].

Metabolism

B. infernus is strictly anaerobic. It's the only strict anaerobe known of the Bacillus genus. Growth is fermentative utilizing glucose or respiratory using formate, lactate, MnO2, Fe3+, trimethylamine oxide, and nitrate as electron donors. Nitrate is reduced to nitrite but not further reduced to ammonia or N2.

"Metal reduction by thermophilic organisms is of great interest for a number of reasons. First, hydrothermal systems are often considered modern analogs of the ancient Earth’s biosphere, and Fe(III) reduction could have been an important process on early Earth. Second, the study of metal-microbe interaction is relevant when undertaking the search for life on other planets. Magnetite, a product of microbial reduction of iron, may constitute a robust bio-marker that may have survived through later stages of alteration. Third, metal reduction by thermophilic organisms is intimately connected to human life, such as bioremediation of heavy metals and radionuclides in abandoned nuclear facilities and landfill sites"[5].

Ecology

Deep terrestrial subsurface; Known samples obtained from depths of 2.65 to 2.77 km in the Taylorsville Triassic basin, Virginia. Bacillus infernus is thermophilic (61ºC), halotolerant (0.6 M Na+), and very slightly alkaliphilic (pH 7.3 to 7.8) [1]. Parenthesis denote optimal conditions.

References

[1]Boone, D. R., Liu, Y., Zhao, Z., Balkwill, D. L., Drake, G. R., Stevens, T. O., & Aldrich, H. C. (1995). Bacillus infernus sp. nov., an fe(iii)- and mn(iv)-reducing anaerobe from the deep terrestrial subsurface. International journal of systematic bacteriology, 441-448. doi: 10.1099/00207713-45-3-441. http://www.ncbi.nlm.nih.gov/pubmed/8590670

[2]Boone, D. R., Liu, Y., Zhao, Z. J., Balkwill, D. L., Drake, D. R., Stevens, T. O., & Aldrich, H. C. (2009, March 05). Bacillus infernus strain TH-23 16s ribosomal RNA, partial sequence. Retrieved from http://www.ncbi.nlm.nih.gov/nuccore/NR_027227.

[3]Balkwill D.L.,Bacillus infernus TH-22 16s small subunit rRNA gene, partial sequence. (1995, May 18). Retrieved from http://www.ebi.ac.uk/ena/data/view/U20384

[4]Balwill, D. L. (1195, July 9). Bacillus infernus sp. nov., an Fe(III)- and Mn(IV)-reducing anaerobe from the deep terrestrial subsurface. Retrieved from http://rdp.cme.msu.edu/hierarchy/hierarchy_browser.jsp?qvector=65535&depth=0&openNode=0&seqid=&currentRoot=2268&searchStr=bacillus%20infernus&endDataValue=&showOpt=

[5]Dong, H. L., & Yu, B. S. (2007). Geomicrobiological processes in extreme environments: A review. (3rd ed., Vol. 30, pp. 202-216). China: International Union of Geological Sciences. Retrieved from http://home.dgeo.uevora.pt/~pedro/FCT/29.pdf

[6]Maughan, H., Birky, C. W., Nicholson, W. L., Rosenzweig, W. D., & Vreeland, R. H. (2002, October 22). Bacillus infernus SplB (splB) gene, partial cds. Retrieved from http://www.ncbi.nlm.nih.gov/nuccore/AY147919.1

[7]Maughan, H., Birky, C. W., Nicholson, W. L., Rosenzweig, W. D., & Vreeland, R. H. (2002, October 22). Bacillus infernus RecA (recA) gene, partial cds. Retrieved from http://www.ncbi.nlm.nih.gov/nuccore/AY147926.1


Edited by Matt Flynn, a student of Dr. Lisa R. Moore, University of Southern Maine, Department of Biological Sciences, http://www.usm.maine.edu/bio