Ashbya gossypii

Classification

Higher Order Taxa:

Fungi, Ascomycota, Saccharomycetes, Saccharomycetales, Saccharomycetaceae

Species:

A. gossypii

Description and Significance

Ashbya gossypii (Eremothecium gossypii) is a filamentous fungus, meaning that it is an infectious agent of the fungus kingdom consisting of a long series of attached cells. It is closely related to unicellular yeasts, especially Saccharomyces cerevisiae, a yeast with which it shares more than 90% of its genome.

Ashbya gossypii is an effective fungus in which to study the growth of long and multinucleate (more than one nucleus) fungal cells. It has a small genome, haploid nuclei, and efficient gene targeting methods, characteristics that make it favorable in studies. Through the work of Professor Peter Philippsen and research team, basic yet essential knowledge was gained on the species which is now applied to problems in medicine and agriculture [1].

In addition, because this fungal species is so closely related to yeasts (especially Saccharomyces cerevisiae,) it acts as a model for studying regulatory networks. Explorations of these networks reveal the functional differences between filamentous growth and yeast growth. This is important to understanding diseases that affect the environment and humans, such as Candida albicans. [2]. Candida albicans, a human fungal pathogen, switches in morphology from yeast to filamentous form in response to specific environmental stimuli, which is important in studying pathology.

Genome Structure

A comparison of the genomes for Ashbya gossypii and Saccharomyces cerevisiae. Nature Publishing Group 2013.
click to see full picture.

The genome for Ashbya gossypii, fully sequenced in 2004 by the Biozentrum lab, is the smallest genome of a free-living eukaryote thus far, coming up to only 9.2 megabases. It contains a total of 4718 protein-coding genes. As mentioned above, more than 90% of its genes are similar to that of Saccharomyces cerevisiae. Thus scientists were able to reconstruct the evolutionary history of both organisms, finding that most of the genome was conserved. A. gossypii and S. cerevisiae diverged from a common ancestor that had approximately 5,000 genes. In the divergence, genetic duplication occurred in S. cerevisiae, which resulted in this species having approximately 1,000 more genes and 16 chromosomes. Genes were lost in A. gossypii, giving it 7 chromosomes and thus fewer genes than either S. cerevisiae or its ancestor species. This divergence, over 100 million years ago, resulted in a main difference between the two species, which is the way in which the two species grow. S. cerevisiae grows through the expansion of buds: a bubble forms on the tip of the yeast cell which continues to grow into a new cell. In constrast, A. gossypii grows as the polar surface of the cell simply lengthens, resulting in one cell membrane with strings of nuclei inside. [3]

A diagram demonstrating the difference in growth mechanisms of A. gossypii and S. cerevisiae. Lars Molzahn, 2011. click to see full picture.

The comparison of these genes reveals shared homology and synteny (the condition of two or more genes being located on the same chromosome) between the two species.

Professor Peter Philippsen, Ordinarius of Microbiology at the Biozentrum Basel, was the first scientist to fully examine Ashbya Gossypii (a few years they completed the sequencing of the Saccahromyces cerevisiae genome in 1996.)[4] In these explorations of the two species, these scientists were able to find these extensive similarities.

Growth

Life Cycle

Ashbya gossypii begins its life cycle as a single spore. It's isotropic growth involves the haploid spore's germination and the formation of a germ bubble. Once the germ bubble is formed, two germ tubes grow from opposite sites of the bubble, creating the mycelium. From here the young mycelium continues to form and the hyphae diverge and lengthen.

Sporulation occurs at the end of the A. gossypii growth phase. The hyphae develop sporangia, enclosures in which the spores are formed, that originate from the septate compartments. (see Cell Structure section.) To release the spores, the sporangia begin to separate from each other. The hyphae at the septal sites (the discs) break into fragments, the sporangia lyse, and the spores are set free. The individual spores can then begin a new life cycle. In contrast with S. cerevisiae which has mating pheromes, A. gossypii does not require mating for sporulation. This data was discovered in an experiment studying mutant strains of the species, which had mutant strains of pherome receptor genes but could still sporulate. [5].

A Closer Look at Hyphae

Ashbya gossypii is made up of hyphae, or long, thin, branch-like filamentous structures. The nuclei lined up inside the hyphae act independently though they are contained in one cytoplasm. As the nuclei flow through the hyphae, they undergo mitosis at sites of branch formation (where a hyphae will branch off into two, etc.) The two daughter cells will then flow through the new hypha. According to MATLAB-based tracking methods, diffusions of proteins allow communication between nuclei. There are ongoing studies addressing the question of whether the nuclei are competing for resources or if they are functionally independent of one another. [6].

Such apical growth allows fungi to extend into its environment and release enzymes from the tips of hyphae for nutrient intake. Scientists speculate that sporulation in A. gossypii is a result of nutrient deprivation. Deductively, sporulation is less frequent when the extended hypha have reached nutrients.

Cell Structure

To the naked eye, Ashbya gossypii colonies are flat and similar in size and appearance to hair. Under a microscope, they range in color from pale-yellow to vibrant yellow. Their asci, or sexual spore-bearing cells, are long and thin, like thread, and translucent. The ascospores are long and thin as well and also have hooked appendages. [7]. In addition, A. gossypii consists of mycelia and hyphae. The hyphae, like branches of a tree, extend into the space around it. They each consist of a single cell membrane and nuclei. Each hypha has "compartments" separated by septa, which can be seen at a very young stage as rings, or discs. The septa allow the transfer of nuclei from the older parts of the mycelia to the younger parts. The compartments in the hyphae contain about eight nuclei each.

Ecology and Pathology

Ecology

As briefly mentioned under Growth, Ashbya gossypii and fungi in general involve apical growth. This form of growth allows it to extend into fresh zones of substrate, (which its enzymes will erode.) This is especially important for growth when the fungi cells encounter an insoluble polymer such as cellulose, which decreases the organism's rate of enzyme diffusion. [8].

In apical growth, A. gossypii and fungi interact with their environment in order to obtain nutrients. Enzymes secreted from the tips of the hypha will break down the food into simpler molecules, which can then be transported into the mycelium.

Pathology

Ashbya gossypii is a pathogen in certain crops that causes stigmatomycosis. (Ashby and Novell, 1926.) This fungal disease is transmitted by sucking insects and was first discovered in cotton, where it affects the development of hair cells in cotton balls. It can then transfer to citrus fruits, causing dry rot disease in which the fruits dry out and collapse. [9] In the early 1900s, the pathogen, along with two other fungi, caused stigmatomycosis in cotton crops, making it nearly impossible to grow cotton in certain regions and causing huge economical damage. (Frederic P. Miller, Agnes F. Vandome, John McBrewster 2010.)

References

• Jaspersen Lab, 2007. "Sue Jaspersen, Ph.D, Profile." Stowers Institute for Medical Research.
• Biozentrum: The Center for Molecular Life Sciences, 2013. "Election of Peter Philippsen to the Rank of AAAS Fellow, [10]." University of Basel.
• Nature Reviews Microbiology, May 2005 "Ashbya gossypii: A Model for Fungal Developmental Biology." Nature Publishing Group, 2013.
• The Essentials of Life Science Research, 2012. "Eremothecium gossypii (Ashby et Nowell) Kurtzman (ATCC 10895). ATCC copyright.
• Gladfelter Lab, 2013. "Nuclear Anarchy: Timing Variability in the Cell Division Cycle." Trustees of Dartmouth College.
• "Ashbya gossypii Ashbya Genome Database," September 2013. EnsemblFungi.
• Ribeiro O, Domingues L, Penttilä M, Wiebe MG., 2011 "Nutritional requirements and strain heterogeneity in Ashbya gossypii". National Center for Biotechnology Information, U.S. National Library of Medicine.
• Jim Deacon, Institute of Cell and Molecular Biology, 2008. The Microbial World: Fungal tip growth and hyphal tropisms. University of Edinbergh.
• The Joint Genome Institute, 2013. Ashbya gossypii. The Regents of the University of California.
• Frederic P. Miller, Agnes F. Vandome, John McBrewster (Ed.), 2010. "Ashbya gossypii" book. alphascript publishing and VDM Publishing House Ltd.
• Gelber Farbstoffpilz, 2013. Ashbya gossypii photograph. Biotechnologie.ed.

Edited by Jenna Cartusciello, student of Joan Slonczewski for BIOL 116 Information in Living Systems, 2013, Kenyon College.