Bacteroides thetaiotaomicron: Difference between revisions
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==Current Research== | ==Current Research== | ||
1. Functional Genomic and Metabolic Studies of the Adaptations of a Prominent Adult Human Gut Symbiont, Bacteroides thetaiotaomicron, to the Suckling Period: "The adult human gut microbiota is dominated by two divisions of Bacteria, the Bacteroidetes and the Firmicutes. Assembly of this community begins at birth through processes that remain largely undefined. In this report, we examine the adaptations of Bacteroides thetaiotaomicron, a prominent member of the adult distal intestinal microbiota, during the suckling and weaning periods. Germ-free NMRI mice were colonized at birth from their gnotobiotic mothers, who harbored this anaerobic Gram-negative saccharolytic bacterium. B. thetaiotaomicron was then harvested from the ceca of these hosts during the suckling period (postnatal day 17) and after weaning (postnatal day 30). Whole genome transcriptional profiles were obtained at these two time points using custom B. thetaiotaomicron GeneChips. Transcriptome-based in silico reconstructions of bacterial metabolism and gas chromatography-mass spectrometry and biochemical assays of carbohydrate utilization in vivo indicated that in the suckling gut B. thetaiotaomicron prefers host-derived polysaccharides, as well as mono- and oligosaccharides present in mother's milk. After weaning, B. thetaiotaomicron expands its metabolism to exploit abundant, plant-derived dietary polysaccharides. The bacterium's responses to postnatal alterations in its nutrient landscape involve expression of gene clusters encoding environmental sensors, outer membrane proteins involved in binding and import of glycans, and glycoside hydrolases. These expression changes are interpreted in light of a phylogenetic analysis that revealed unique expansions of related polysaccharide utilization loci in three human alimentary tract-associated Bacteroidetes, expansions that likely reflect the evolutionary adaptations of these species to different nutrient niches." | |||
2. Specificity of a Bacteroides thetaiotaomicron Marker for Human Feces: "A bacterial primer set, known to produce a 542-bp amplicon specific for Bacteroides thetaiotaomicron, generated this product in PCR with 1 ng of extracted DNA from 92% of 25 human fecal samples, 100% of 20 sewage samples, and 16% of 31 dog fecal samples. The marker was not detected in 1 ng of fecal DNA from 61 cows, 35 horses, 44 pigs, 24 chickens, 29 turkeys, and 17 geese." | |||
"Results of the present study indicate that the B. thetaiotaomicron test has the potential to become a valuable addition to the fecal source tracking "toolbox." In this context, the utility and eventual role of this assay will be determined by further evaluation." | |||
3. First Isolation of Bacteroides thetaiotaomicron from a Patient with a Cholesteatoma and Experiencing Meningitis: "A 45-year-old man with a cholesteatoma experienced purulent meningitis. Microbial analysis of cerebrospinal fluid yielded in pure culture a gram-negative bacillus. Phenotypic methods were suggestive of a Bacteroides distasonis or either a Bacteroides thetaiotaomicron or Bacteroides ovatus infection. The isolate was identified by 16S rRNA gene sequence analysis as B. thetaiotaomicron. This is the first case of B. thetaiotaomicron meningitis in pure culture" | |||
"We report on the first case of meningitis due to B. thetaiotaomicron as a unique etiological agent. Isolation has been made possible by the systematic inoculation of the CSF sample in anaerobic media. This isolate was further identified by 16S rRNA gene sequencing, illustrating the usefulness of this method for identification to the species level. This well-defined identification allowed us to describe the natural history and the clinical and biological features of our patient's meningitis and, finally, the antibiotic susceptibility of the etiologic agent, B. thetaiotaomicron." | |||
==References== | ==References== | ||
Revision as of 19:05, 3 May 2007
A Microbial Biorealm page on the genus Bacteroides thetaiotaomicron
Classification
Higher order taxa
Bacteria; Bacteroidetes; Bacteroidetes (class); Bacteroidales; Bacteroidaceae
Species
Bacteroides thetaiotaomicron
Description and significance
Bacteroides thetaiotaomicron, a Gram negative anaerobic microbe, resides in and dominates the human intestinal tract . It consists of a 4776 member proteome containing the structural means to bring in and hydrolyze non-digestible polysaccharides as well as an environment sensing mechanism consisting of outer membrane proteins. Initially isolated from fecal matter, Bacteroides thetaiotaomicron has great importance in terms of the study of the symbiotic bacteria-host relationships within the human intestine as well as for its digestive abilities and potential breakdown of digested plants.
Genome structure
Bacteroides thetaiotaomicron consists of a 6.26 Mb genome containing 4776 genes that encode for 4776 proteins. The genome exists as one circular chromosome made of double stranded DNA. The GC content is 42.8% and 90% of the genome is involved in coding for proteins.
Additionally, Bacteroides thetaiotaomicron consists of one circular plasmid (p5482) which is 33,038 bp long, containing 38 genes coding for 38 proteins. The GC content of the plasmid is 47.2% and 83% of the genome is involved in coding for proteins. This 33 kb plasmid is one of several types of mobile genetic elements, including 63 transposases and four homologs of the conjugative transposon CTnDOT. The broad range of CTnDOT hosts as well as presence of CTn leads to the theory that microevolution could occur by means of DNA transfer between B. thetaiotaomicron and other forms of bacteria residing in the human gut.
Another interesting feature of B. thetaiotaomicron is that a large portion of its genome is involved in the harvesting and metabolizing of dietary polysaccharides. The co-localization of these genes involved in polysaccharide metabolism along with ECF-type sigma factors (important in sensing envoronmental cues) allow B. thetaiotaomicron to coordinate nutrient availability with expression of these specific genes.
Cell structure and metabolism
Bacteroides thetaiotaomicron is an anaerobic obligate parasite, which utilizes polysaccharides as its source of carbon and energy. An important step in the metabolism of the polysaccharide entails its binding to the cell surface before undergoing hydrolysis. This allows for the efficient sequesteration of hydrolysis products. Cell associated enzymes are responsible for hydrolyzing the polysaccharides into small fragments which are easily digestible. This binding and cleavage of the large substrate occurs either before or during translocation into the periplasm. The outer membrane associated multi-protein complex involved in this digestion process separates substrate binding and hydrolysis using different proteins for each task.
Ecology
Describe any interactions with other organisms (included eukaryotes), contributions to the environment, effect on environment, etc.
Pathology
How does this organism cause disease? Human, animal, plant hosts? Virulence factors, as well as patient symptoms.
Application to Biotechnology
Bacteroides thetaiomicron has been found to produce very high levels of a digestive enzyme seen to effective in the breakdown and subsequent digestion of plants, and thus has been a target for improvement of animal digestion. Modification of its activities would be a a good means to increase animal digestion of certain feed materials.
Current Research
1. Functional Genomic and Metabolic Studies of the Adaptations of a Prominent Adult Human Gut Symbiont, Bacteroides thetaiotaomicron, to the Suckling Period: "The adult human gut microbiota is dominated by two divisions of Bacteria, the Bacteroidetes and the Firmicutes. Assembly of this community begins at birth through processes that remain largely undefined. In this report, we examine the adaptations of Bacteroides thetaiotaomicron, a prominent member of the adult distal intestinal microbiota, during the suckling and weaning periods. Germ-free NMRI mice were colonized at birth from their gnotobiotic mothers, who harbored this anaerobic Gram-negative saccharolytic bacterium. B. thetaiotaomicron was then harvested from the ceca of these hosts during the suckling period (postnatal day 17) and after weaning (postnatal day 30). Whole genome transcriptional profiles were obtained at these two time points using custom B. thetaiotaomicron GeneChips. Transcriptome-based in silico reconstructions of bacterial metabolism and gas chromatography-mass spectrometry and biochemical assays of carbohydrate utilization in vivo indicated that in the suckling gut B. thetaiotaomicron prefers host-derived polysaccharides, as well as mono- and oligosaccharides present in mother's milk. After weaning, B. thetaiotaomicron expands its metabolism to exploit abundant, plant-derived dietary polysaccharides. The bacterium's responses to postnatal alterations in its nutrient landscape involve expression of gene clusters encoding environmental sensors, outer membrane proteins involved in binding and import of glycans, and glycoside hydrolases. These expression changes are interpreted in light of a phylogenetic analysis that revealed unique expansions of related polysaccharide utilization loci in three human alimentary tract-associated Bacteroidetes, expansions that likely reflect the evolutionary adaptations of these species to different nutrient niches."
2. Specificity of a Bacteroides thetaiotaomicron Marker for Human Feces: "A bacterial primer set, known to produce a 542-bp amplicon specific for Bacteroides thetaiotaomicron, generated this product in PCR with 1 ng of extracted DNA from 92% of 25 human fecal samples, 100% of 20 sewage samples, and 16% of 31 dog fecal samples. The marker was not detected in 1 ng of fecal DNA from 61 cows, 35 horses, 44 pigs, 24 chickens, 29 turkeys, and 17 geese."
"Results of the present study indicate that the B. thetaiotaomicron test has the potential to become a valuable addition to the fecal source tracking "toolbox." In this context, the utility and eventual role of this assay will be determined by further evaluation."
3. First Isolation of Bacteroides thetaiotaomicron from a Patient with a Cholesteatoma and Experiencing Meningitis: "A 45-year-old man with a cholesteatoma experienced purulent meningitis. Microbial analysis of cerebrospinal fluid yielded in pure culture a gram-negative bacillus. Phenotypic methods were suggestive of a Bacteroides distasonis or either a Bacteroides thetaiotaomicron or Bacteroides ovatus infection. The isolate was identified by 16S rRNA gene sequence analysis as B. thetaiotaomicron. This is the first case of B. thetaiotaomicron meningitis in pure culture"
"We report on the first case of meningitis due to B. thetaiotaomicron as a unique etiological agent. Isolation has been made possible by the systematic inoculation of the CSF sample in anaerobic media. This isolate was further identified by 16S rRNA gene sequencing, illustrating the usefulness of this method for identification to the species level. This well-defined identification allowed us to describe the natural history and the clinical and biological features of our patient's meningitis and, finally, the antibiotic susceptibility of the etiologic agent, B. thetaiotaomicron."
References
http://www.ebi.ac.uk/integr8/OrganismStatsAction.do?orgProteomeId=127
Edited by Bashar Mirza, student of Rachel Larsen and Kit Pogliano
