Monocercomonoides: Difference between revisions
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=5. Metabolic processes= | =5. Metabolic processes= | ||
Like all eukaryotes, Monocercomonoides carries out glycolysis as part of its metabolism (6,7). Since Monocercomonoides lacks any mitochondria or mitochondrion-related organelles (MROs), each molecule of glucose catabolized results in a yield of relatively fewer ATP when compared to eukaryotes that can engage the TCA cycle and electron transport chain (3). To account for this, Monocercomonoides has adapted several alternative glycolytic enzymes that aid in energy conservation. The four enzymes that differ from those found in the typical eukaryotic glycolytic pathway include pyrophosphate-fructose-6-phosphate phosphotransferase, fructose-bisphosphate aldolase class II, 2,3-bisphosphoglycerate independent phosphoglycerate mutase, and pyruvate phosphate dikinase. These are commonly abbreviated as PFP, FBA class II, iPGM, and PPDK, respectively (Figure 3). A fifth alternative enzyme, an alternative to glucose-6-phosphate isomerase (GPI), is suspected to play a role early in the glycolytic pathway but has yet to be confirmed (7). | |||
The addition of PPDK to the conversion of phosphoenolpyruvate to pyruvate (typically catalyzed solely by pyruvate kinase) has a robust effect on ATP conservation. In this altered pathway, PPDK is expressed at much higher levels and allows for greater ATP conservation and regulation of glycolysis when compared to pyruvate kinase. This is due to PPDK’s reversible nature and use of inorganic phosphate where pyruvate kinase only catalyzes the forward reaction (7). As in typical glycolysis, co-factors are reduced in order to oxidize substrates for ATP production (6). In order to regain the oxidative power necessary for energy production, Monocercomonoides makes use of anaerobic fermentation, using pyruvate:ferredoxin oxidoreductase (PFOR) to re-oxidize these co-factors and form ethanol and acetic acid as byproducts (1,7). Re-oxidation of co-factors is also carried out by [FeFe]-hydrogenase, yielding hydrogen gas (7). | |||
Along with adjusted glycolysis, Monocercomonoides utilizes a complete arginine deiminase/degradation pathway (Figure 4) similar to those found in Giardia intestinalis and Trichomonas vaginalis (3,1,8). The arginine degradation pathway produces eight times more ATP than glycolysis in Giardia intestinalis (7,11). This same output is expected in Monocercomonoides but has yet to be fully confirmed (1,7). Adoption of this pathway allows Monocercomonoides to use an alternative energy pathway in addition to glycolysis, increasing the overall ATP yield necessary to function in the absence of mitochondria or MROs. | |||
In the absence of any mitochondria or MROs, Monocercomonoides makes use of an Iron-Sulfur Cluster assembly mechanism previously unseen in eukaryotes (1). Iron-Sulfur Clusters (ISC) are prosthetic groups essential to almost all life forms and participate in several functions including enzyme activity, electron transport, and regulation of gene expression (9,10). Thought to be a ubiquitous pathway in all eukaryotes, Monocercomonoides is novel in that it lacks all genes encoding for typical eukaryotic ISC formation (1). Monocercomonoides instead performs de novo ISC formation through the use of a multi-subunit sulfur assimilation (SUF) system. Components of this system have no mitochondrial signaling pathways and instead act solely in the cytoplasm. Monocercomonoides’ SUF system retains all major catalytic sites on the SUF subunits seen previously in prokaryotes while exhibiting a fused SufS and SufU subunit, a feature unique to Monocercomonoides alone (1,12). | |||
=6. Ecology= | =6. Ecology= | ||
Habitat; symbiosis; contributions to the environment. | Habitat; symbiosis; contributions to the environment. | ||
Revision as of 14:18, 12 December 2016
1. Classification
a. Higher order taxa
Domain: Eukarya (1)
Phylum: Metamonada (1)
Class: Anaeromonadea (2)
Order: Oxymonadida (2)
Family: Polymastigidae (2)
Genus: Monocercomonoides
2. Description and significance
The microbial eukaryote genus Monocercomonoides is a type of oxymonad characterized as the first eukaryote genus to lack any mitochondrial genes and all key proteins responsible for mitochondrial function (1). Species within the genus have been discovered living in the intestinal region of small mammals and insects (1,3). The current hypothesis for the species’ ability to survive without mitochondria is due to its habitat and a sulfur mobilization system acquired from bacteria (1). Some of the genus’s closest relatives include the taxa Trichomonas vaginalis, Giardia intestinalis and Spironucleus salmonicida, all of which contain genes coding for mitochondrion-related organelles, implying that the loss of mitochondria in Monocercomonoides was a secondary adaptation rather than a distant evolutionary divergence from mitochondria-containing eukaryotes (1). This genus is significant because it challenges the previous notion of mitochondrial inclusion being a requirement for eukaryotic life (1).
3. Genome structure
Describe the size and content of the genome. How many chromosomes? Circular or linear? Other interesting features? What is known about its sequence?
4. Cell structure
Monocercomonoides has a total of 4 whip-like structures used for movement known as flagella anchored to their cellular membrane with modified centrioles known as basal bodies (3). The flagella are grouped in pairs on opposite sides of the cell and each is longer than the entirety of the cells ovoid body (Figure 2) (3). As with all oxymonads, Monocercomonoides has a single long contractible appendage that originates from the base of a flagellum known as an axostyle. The axostyle is connected to the first basal body by a sheet of microtubules referred to as the preaxostyle (3). Monocercomonoides also has two basal body anchors known as microtubular roots and each is associated with one pair of the two basal body pairs. Monocercomonoides is the only oxymonad genus known to have microtubular roots (3). Electron microscopic imaging of Monocercomonoides has found that the intracellular morphology lacks any Golgi apparatus, mitochondria or potential homologs of the two structures (5).
5. Metabolic processes
Like all eukaryotes, Monocercomonoides carries out glycolysis as part of its metabolism (6,7). Since Monocercomonoides lacks any mitochondria or mitochondrion-related organelles (MROs), each molecule of glucose catabolized results in a yield of relatively fewer ATP when compared to eukaryotes that can engage the TCA cycle and electron transport chain (3). To account for this, Monocercomonoides has adapted several alternative glycolytic enzymes that aid in energy conservation. The four enzymes that differ from those found in the typical eukaryotic glycolytic pathway include pyrophosphate-fructose-6-phosphate phosphotransferase, fructose-bisphosphate aldolase class II, 2,3-bisphosphoglycerate independent phosphoglycerate mutase, and pyruvate phosphate dikinase. These are commonly abbreviated as PFP, FBA class II, iPGM, and PPDK, respectively (Figure 3). A fifth alternative enzyme, an alternative to glucose-6-phosphate isomerase (GPI), is suspected to play a role early in the glycolytic pathway but has yet to be confirmed (7).
The addition of PPDK to the conversion of phosphoenolpyruvate to pyruvate (typically catalyzed solely by pyruvate kinase) has a robust effect on ATP conservation. In this altered pathway, PPDK is expressed at much higher levels and allows for greater ATP conservation and regulation of glycolysis when compared to pyruvate kinase. This is due to PPDK’s reversible nature and use of inorganic phosphate where pyruvate kinase only catalyzes the forward reaction (7). As in typical glycolysis, co-factors are reduced in order to oxidize substrates for ATP production (6). In order to regain the oxidative power necessary for energy production, Monocercomonoides makes use of anaerobic fermentation, using pyruvate:ferredoxin oxidoreductase (PFOR) to re-oxidize these co-factors and form ethanol and acetic acid as byproducts (1,7). Re-oxidation of co-factors is also carried out by [FeFe]-hydrogenase, yielding hydrogen gas (7).
Along with adjusted glycolysis, Monocercomonoides utilizes a complete arginine deiminase/degradation pathway (Figure 4) similar to those found in Giardia intestinalis and Trichomonas vaginalis (3,1,8). The arginine degradation pathway produces eight times more ATP than glycolysis in Giardia intestinalis (7,11). This same output is expected in Monocercomonoides but has yet to be fully confirmed (1,7). Adoption of this pathway allows Monocercomonoides to use an alternative energy pathway in addition to glycolysis, increasing the overall ATP yield necessary to function in the absence of mitochondria or MROs.
In the absence of any mitochondria or MROs, Monocercomonoides makes use of an Iron-Sulfur Cluster assembly mechanism previously unseen in eukaryotes (1). Iron-Sulfur Clusters (ISC) are prosthetic groups essential to almost all life forms and participate in several functions including enzyme activity, electron transport, and regulation of gene expression (9,10). Thought to be a ubiquitous pathway in all eukaryotes, Monocercomonoides is novel in that it lacks all genes encoding for typical eukaryotic ISC formation (1). Monocercomonoides instead performs de novo ISC formation through the use of a multi-subunit sulfur assimilation (SUF) system. Components of this system have no mitochondrial signaling pathways and instead act solely in the cytoplasm. Monocercomonoides’ SUF system retains all major catalytic sites on the SUF subunits seen previously in prokaryotes while exhibiting a fused SufS and SufU subunit, a feature unique to Monocercomonoides alone (1,12).
6. Ecology
Habitat; symbiosis; contributions to the environment.
7. Pathology
How does this organism cause disease? Human, animal, plant hosts? Virulence factors, as well as patient symptoms.
7. Key microorganisms
Include this section if your Wiki page focuses on a microbial process, rather than a specific taxon/group of organisms
8. Current Research
Include information about how this microbe (or related microbes) are currently being studied and for what purpose
9. References
It is required that you add at least five primary research articles (in same format as the sample reference below) that corresponds to the info that you added to this page. [Sample reference] Faller, A., and Schleifer, K. "Modified Oxidase and Benzidine Tests for Separation of Staphylococci from Micrococci". Journal of Clinical Microbiology. 1981. Volume 13. p. 1031-1035.
