Template:Genus larsen

Classification

Higher order taxa

Domain:, Phylum: Bacteria, Class: Inside series of Bacteria, Order:, Family:

Bacteria; Spirochaetes; Spirochaetales; Spirochaetaceae; Treponema.

(there may be additional subcategories included as well. You can just copy this information from the NCBI taxonomy page)

Edited by Neena Patel, student of Rachel Larsen at UCSD.

Genus

Genus species: Treponema denticola

NCBI: Taxonomy

Edited by Neena Patel, student of Rachel Larsen at UCSD.

Description and significance

Describe the appearance, habitat, etc. of the organism, and why it is important enough to have its genome sequenced. Describe how and where it was isolated. Include a picture or two (with sources) if you can find them.

Genome structure

Describe the size and content of the genome. How many chromosomes? Circular or linear? Other interesting features? What is known about its sequence? Does it have any plasmids? Are they important to the organism's lifestyle?

Determination of the DNA genome sequence of this strain has been or is being determined either in whole or in part.

Treponema denticola ATCC 35405 has a complete genome. It is made up of dsDNA and 1 chromosome. It is circular and the length is 2,843,201 nucleotides. The GC content is 37%. It has 2838 genes. Replicon Type: chromosome.

Cell structure and metabolism

Describe any interesting features and/or cell structures; how it gains energy; what important molecules it produces.

Ecology

Describe any interactions with other organisms (included eukaryotes), contributions to the environment, effect on environment, etc.

Pathology

Treponema denticola is a bacterial pathogen and plant plastid. How does this organism cause disease? Human, animal, plant hosts? Virulence factors, as well as patient symptoms.

Application to Biotechnology

Does this organism produce any useful compounds or enzymes? What are they and how are they used?

Current Research

Enter summaries of the most recent research here--at least three required

References

example:

Glockner, F. O., M. Kube, M. Bauer, H. Teeling, T. Lombardot, W. Ludwig, D. Gade, A. Beck, K Borzym, K Heitmann, R. Rabus, H. Schlesner, R. Amann, and R. Reinhardt. 2003. "Complete genome sequence of the marine planctomycete Pirellula sp. strain 1." Proceedings of the National Acedemy of Sciences, vol. 100, no. 14. (8298-8303)

Edited by student of Rachel Larsen and Kit Pogliano