Ralstonia metallidurans: Difference between revisions

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{{Biorealm Genus}}
{{Biorealm Genus}}
[[Image:060718_gold_bacteria_01.jpg|thumb|300px|right|'' Bacterial induced formation of Cd crystals by Ralstonia metallidurans on Zirfon M5 membranes in the continuous tubular membrane reactor.''. [http://images.livescience.com/images/060718_gold_bacteria_01.jpg]]]


==Classification==
==Classification==
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Kingdom: Bacteria
Kingdom: Bacteria
Phylum: Proteobacteria
Phylum: Proteobacteria
Class: Beta Proteobacteria
Class: Beta Proteobacteria
Order:Burkholderiales
Order: Burkholderiales
Family: Ralstoniaceae
Family: Ralstoniaceae
Genus: Ralstonia
Genus: Ralstonia
Species: R. metallidurans
Species: R. metallidurans
Strain: CH3
[Others may be used.  Use [http://www.ncbi.nlm.nih.gov/Taxonomy/ NCBI] link to find]


===Species===
===Species===
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'''NCBI: [http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Tree&id=2&lvl=3&lin=f&keep=1&srchmode=1&unlock Taxonomy]'''
'''NCBI: [http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Tree&id=2&lvl=3&lin=f&keep=1&srchmode=1&unlock Taxonomy]'''
|}
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Ralstonia solanacearum
Ralstonia oxalatica
Ralstonia paucula
Ralstonia pickettii


''Genus species''
''Genus species''
Ralstonia metallidurans
 
==Description and significance==
==Description and significance==
Ralstonia metallidurans is a gram-negative, non-spore forming bacillus that flourishes in millimolar concentrations of toxic heavy metals. It and other metal-resistant members of the genus Ralstonia are frequently found in sediments and soils with a high content of heavy metals from diverse geographical locations.
 
The reference strain, CH34, was first isolated in 1976 from the sludge of a zinc decantation tank in Belgium that was polluted with high concentrations of several heavy metals.
Alcaligenes eutrophus CH34, was just recently renamed Ralstonia Metallidurans. It was first isolated in 1976 from the sludge of a zinc decantation tank in Belgium that was polluted with high concentrations of several heavy metals, it and other metal-resistant members of the genus Ralstonia are frequently found in sediments and soils with a high content of heavy metals from diverse geographical locations.
Ralstonia metallidurans was identified by Frank Reith of Australian National University and his colleagues as the common denominator among bacteria comprising a dried organic biofilm found on the surface of gold grains collected from a park and gold mines in southern New South Wales and northern Queensland, Australia. Reith further isolated and grew the bacteria in the lab and found that R. metallidurans have the unique ability to precipitate gold. According to Reith, "A unique attribute of R. metallidurans is that it is able to survive in concentrations of gold that would kill most other micro-organisms." Metals like gold are normally toxic to bacteria. It is still unknown exactly how the bacteria help to precipitate the gold grains, but is possible that the microbe screens out the gold as part of an effort to detoxify its immediate environment.
 
Describe the appearance, habitat, etc. of the organism, and why it is important enough to have its genome sequenced.  Describe how and where it was isolated.
Ralstonia metallidurans is gram-negative, non-spore forming bacterium which thrives in the presence of millimolar concentrations of several heavy-metals; Zn, Cd, Co,Pb,Hg, Ni and Cr. Metal resistance functions are mainly encoded on two plasmids, pMOL28 and pMOL30, which produce metal exporters that pump metal ions out of the cell, protecting intracellular macromolecules from the toxic effects of high concentrations of metal.
Include a picture or two (with sources) if you can find them.
 
 
This extremophile is better able to withstand high concentrations of heavy metals than any other well-studied organism. This fact renders it a potential agent of bioremediation as well as an ideal model organism for understanding metal resistance phenotypes. Due to its survival in extreme metal concentrations and genomic sequencing  it is thought to be one of the first life forms on earth, existing when there was very little oxygen in the atmosphere some 2.5 billion years ago.


==Genome structure==
==Genome structure==
A typical feature of these metal-resistant Ralstonia is the presence of one or two large megaplasmids which contain genes for multiple resistances to heavy metals. The reference strain, CH34, contains two large plasmids, pMOL28 (180 kb) and pMOL30 (240 kb). Together these plasmids confer resistance to Zn, Cd, Co, Pb, Cu, Hg , Ni and Cr. Both plasmids are low copy number and stably maintained even without selective pressure. They are self-transferable at low frequencies.


Describe the size and content of the genome.  How many chromosomes?  Circular or linear?  Other interesting features?  What is known about its sequence?
Its genome is approximately 6800 kb in size. The heavy-metal resistance found in these bacteia is conferred by two large megaplasmids (pMOL28=180 kbp and pMOL30=240 kbp) carrying gene clusters that encode cation-efflux machinery spanning both bacterial membranes. These low-copy number plasmids are maintained in the presence or absence of selective pressure and are self-transferable at relatively low frequencies. The Minimal Inhibitory Concentration (MIC) for free, non-chelated Ni, Co, Zn and Cd are 2.5, 20, 12 and 2.5 mM, respectively for the reference strain.
Does it have any plasmids?  Are they important to the organism's lifestyle?
 
The genome of this bacterium contains also 8 P-type ATPase involved in metal efflux specialized in lead, cadmium, thallium and/or copper efflux, and several others mechanisms involved in metal processing.  
 
Scientisist have analysed the genome of Ralstonia metallidurans for genes encoding homologues of established and putative transport proteins; 13% of all genes in Ralstonia metallidurans encode such homologues. Nearly one-third of the transporters identified (32%) appear to function in inorganic ion transport with three-quarters of these acting on cations. Transporters specific for amino acids outnumber sugar transporters nearly 3 : 1, and this fact plus the large number of uptake systems for organic acids indicates the heterotrophic preferences of these bacteria. Putative drug efflux pumps comprise 10% of the encoded transporters, but numerous efflux pumps for heavy metals, metabolites and macromolecules were also identified.


==Cell structure and metabolism==
==Cell structure and metabolism==
Its optimal growth temperature is 30 çC. As discussed above, an interesting characteristic of R. metallidurans is their ability to thrive in millimolar concentrations of heavy metals which are normally toxic to microbes. Furthermore, this bacteria contributes to the formation of gold.


Describe any interesting features and/or cell structures; how it gains energy; what important molecules it produces.
Ralstonia metallidurans uses a variety of substrates as its carbon source or it can grow chemo-lithotropically using molecular hydrogen as the energy source and carbon dioxide as a carbon source. When nitrate is present Ralsonia metallidurans can grow anaerobically.
Its optimal growth temperature is 30 çC.  


==Ecology==
==Ecology==
Describe any interactions with other organisms (included eukaryotes), contributions to the environment, effect on environment, etc.
 
Due to its ability to withstand high concentrations of heavy metals it renders it as a potential agent of bioremediation of soil and water contaminated with heavy metals or chlorinated organic compounds as well as an ideal model organism for understanding metal resistance phenotypes.
 
Lead contamination is a serious threat to human health and the environment. Lead levels are typically measured by using atomic absorption spectroscopy or other related instrumental methods. Developent of fluorescent Lead II Probe from Lead II-regulatory protein isolated from Ralstonia Metallidurans could provide rapid, on-site evaluation of the lead content of a sample.


==Pathology==
==Pathology==
How does this organism cause disease?  Human, animal, plant hosts?  Virulence factors, as well as patient symptoms.
 
Ralstonia metallidurans is not a pathogen and does not inhabit any host organisms.


==Application to Biotechnology==
==Application to Biotechnology==
Does this organism produce any useful compounds or enzymes? What are they and how are they used?
 
Interestingly, enzymes from Ralstonia metallidurans were used by scientists in constructing a fuel cell. By encasing a pair of electrodes coated with these enzymes from Ralstonia metallidurans which oxidize hydrogen put inside a container filled with air and 3 percent more hydrogen. Trials of the fuel cell produced enough electricity to make a watch work. Larger scale productions are thought to be possible and are in the making.
 
[[[[Image:060802103513.jpg|thumb|300px|left|''Colored scanning electron image of bacterioform gold on a gold grain from the Hit or Miss Mine in northern Queensland''. [http://images.livescience.com/images/060718_gold_bacteria_01.jpg]]]


==Current Research==
==Current Research==


Enter summaries of the most recent research here--at least three required
It is being researched that Ralstonia metallidurans could be involved in precipitating gold out of solution. It has an ability to survive in gold concentrations that would kill most other organisms.It is possible that the microbe screens out the gold as part of an effort to detoxify its immediate environment.


==References==
==References==
[Sample reference] [http://ijs.sgmjournals.org/cgi/reprint/50/2/489 Takai, K., Sugai, A., Itoh, T., and Horikoshi, K. "''Palaeococcus ferrophilus'' gen. nov., sp. nov., a barophilic, hyperthermophilic archaeon from a deep-sea hydrothermal vent chimney". ''International Journal of Systematic and Evolutionary Microbiology''. 2000. Volume 50. p. 489-500.]
 
http://en.wikipedia.org/wiki/Cupriavidus_necator
http://genome.jgi-psf.org/draft_microbes/ralme/ralme.home.html
http://www.livescience.com/othernews/060718_gold_bacteria.html
http://www.livescience.com/othernews/060718_gold_bacteria.html
Edited by Shu-Mei (April) Yu, student of [mailto:ralarsen@ucsd.edu Rachel Larsen] and Kit Pogliano
 
http://www.physorg.com/news94144517.html
 
http://genamics.com/cgi-bin/genamics/genomes/genomesearch.cgi?field=Relevance&query=Bioremediatio...
 
http://www.iran-daily.com/1385/2615/html/science.htm
 
Edited by student of [mailto:ralarsen@ucsd.edu Rachel Larsen] and Kit Pogliano

Revision as of 21:51, 30 May 2007

A Microbial Biorealm page on the genus Ralstonia metallidurans

Bacterial induced formation of Cd crystals by Ralstonia metallidurans on Zirfon M5 membranes in the continuous tubular membrane reactor.. [1]


Classification

Higher order taxa

Kingdom: Bacteria Phylum: Proteobacteria Class: Beta Proteobacteria Order:Burkholderiales Family: Ralstoniaceae Genus: Ralstonia Species: R. metallidurans Strain: CH3

Species

NCBI: Taxonomy

Ralstonia solanacearum Ralstonia oxalatica Ralstonia paucula Ralstonia pickettii

Genus species

Description and significance

Alcaligenes eutrophus CH34, was just recently renamed Ralstonia Metallidurans. It was first isolated in 1976 from the sludge of a zinc decantation tank in Belgium that was polluted with high concentrations of several heavy metals, it and other metal-resistant members of the genus Ralstonia are frequently found in sediments and soils with a high content of heavy metals from diverse geographical locations.

Ralstonia metallidurans is gram-negative, non-spore forming bacterium which thrives in the presence of millimolar concentrations of several heavy-metals; Zn, Cd, Co,Pb,Hg, Ni and Cr. Metal resistance functions are mainly encoded on two plasmids, pMOL28 and pMOL30, which produce metal exporters that pump metal ions out of the cell, protecting intracellular macromolecules from the toxic effects of high concentrations of metal.


This extremophile is better able to withstand high concentrations of heavy metals than any other well-studied organism. This fact renders it a potential agent of bioremediation as well as an ideal model organism for understanding metal resistance phenotypes. Due to its survival in extreme metal concentrations and genomic sequencing it is thought to be one of the first life forms on earth, existing when there was very little oxygen in the atmosphere some 2.5 billion years ago.

Genome structure

Its genome is approximately 6800 kb in size. The heavy-metal resistance found in these bacteia is conferred by two large megaplasmids (pMOL28=180 kbp and pMOL30=240 kbp) carrying gene clusters that encode cation-efflux machinery spanning both bacterial membranes. These low-copy number plasmids are maintained in the presence or absence of selective pressure and are self-transferable at relatively low frequencies. The Minimal Inhibitory Concentration (MIC) for free, non-chelated Ni, Co, Zn and Cd are 2.5, 20, 12 and 2.5 mM, respectively for the reference strain.

The genome of this bacterium contains also 8 P-type ATPase involved in metal efflux specialized in lead, cadmium, thallium and/or copper efflux, and several others mechanisms involved in metal processing.

Scientisist have analysed the genome of Ralstonia metallidurans for genes encoding homologues of established and putative transport proteins; 13% of all genes in Ralstonia metallidurans encode such homologues. Nearly one-third of the transporters identified (32%) appear to function in inorganic ion transport with three-quarters of these acting on cations. Transporters specific for amino acids outnumber sugar transporters nearly 3 : 1, and this fact plus the large number of uptake systems for organic acids indicates the heterotrophic preferences of these bacteria. Putative drug efflux pumps comprise 10% of the encoded transporters, but numerous efflux pumps for heavy metals, metabolites and macromolecules were also identified.

Cell structure and metabolism

Ralstonia metallidurans uses a variety of substrates as its carbon source or it can grow chemo-lithotropically using molecular hydrogen as the energy source and carbon dioxide as a carbon source. When nitrate is present Ralsonia metallidurans can grow anaerobically. Its optimal growth temperature is 30 çC.

Ecology

Due to its ability to withstand high concentrations of heavy metals it renders it as a potential agent of bioremediation of soil and water contaminated with heavy metals or chlorinated organic compounds as well as an ideal model organism for understanding metal resistance phenotypes.

Lead contamination is a serious threat to human health and the environment. Lead levels are typically measured by using atomic absorption spectroscopy or other related instrumental methods. Developent of fluorescent Lead II Probe from Lead II-regulatory protein isolated from Ralstonia Metallidurans could provide rapid, on-site evaluation of the lead content of a sample.

Pathology

Ralstonia metallidurans is not a pathogen and does not inhabit any host organisms.

Application to Biotechnology

Interestingly, enzymes from Ralstonia metallidurans were used by scientists in constructing a fuel cell. By encasing a pair of electrodes coated with these enzymes from Ralstonia metallidurans which oxidize hydrogen put inside a container filled with air and 3 percent more hydrogen. Trials of the fuel cell produced enough electricity to make a watch work. Larger scale productions are thought to be possible and are in the making.

[[

Colored scanning electron image of bacterioform gold on a gold grain from the Hit or Miss Mine in northern Queensland. [2]

Current Research

It is being researched that Ralstonia metallidurans could be involved in precipitating gold out of solution. It has an ability to survive in gold concentrations that would kill most other organisms.It is possible that the microbe screens out the gold as part of an effort to detoxify its immediate environment.

References

http://www.livescience.com/othernews/060718_gold_bacteria.html

http://www.physorg.com/news94144517.html

http://genamics.com/cgi-bin/genamics/genomes/genomesearch.cgi?field=Relevance&query=Bioremediatio...

http://www.iran-daily.com/1385/2615/html/science.htm

Edited by student of Rachel Larsen and Kit Pogliano