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<span style="font-family: | <span style="font-family:Times New Roman;"> | ||
<big style="font-size:250%;">Rothia dentocariosa</big> | <big style="font-size:250%;">Rothia dentocariosa</big> | ||
</span> | </span> | ||
<br>Alexandria Chin, Bench C, 23 September 2016 | <br>Alexandria Chin, Bench C, 23 September 2016 | ||
==Classification== | ==Classification== | ||
===Higher order taxa=== | ===Higher order taxa=== | ||
Bacteria – Terrabacteria group – Actinobacteria – Actinobacteria – Micrococcales – Micrococcaceae – Rothia < | Bacteria – Terrabacteria group – Actinobacteria – Actinobacteria – Micrococcales – Micrococcaceae – Rothia <ref name=a>[http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=762948 NCBI Taxonomy Browser]</ref> | ||
===Species=== | ===Species=== | ||
''Rothia dentocariosa'' | ''Rothia dentocariosa'' | ||
<br>Type strain: strain ATCC 17931= CCUG 35437 = CIP 81.83 = DSM 43762 = DSM 46363 = IFO (now NBRC) 12531 = JCM 3067 = NCTC 10917 = NRRL B-8017. < | <br>Type strain: strain ATCC 17931= CCUG 35437 = CIP 81.83 = DSM 43762 = DSM 46363 = IFO (now NBRC) 12531 = JCM 3067 = NCTC 10917 = NRRL B-8017. <ref name=b>[http://www.bacterio.net/rothia.html List of Prokaryotic Names with Standing in Nomenclature]</ref><br/> | ||
==Description and | ==Description and Significance== | ||
''Rothia dentocariosa'' was first discovered by Onisi in 1949, from dental plaques and caries in humans. < | ''Rothia dentocariosa'' was first discovered by Onisi in 1949, from dental plaques and caries in humans. <ref name=d>[http://www.ncbi.nlm.nih.gov/pubmed/9892536?dopt=Abstract Ferraz, V., McCarthy, K., Smith, D., Koornhof, HJ. (1998) Rothia dentocariosa endocarditis and aortic root abscess. Journal of Infection '''37'''(3): 292-295.]</ref> | ||
From his study of the organism he proposed it be named ''A. dentocariosus'' because of the morphological similarities with ''Actinomyces'' species found in the mouth. His study of the isolate showed that it was a highly pleomorphic, facultative anaerobic organism with both coccoid and branched filament structures. < | From his study of the organism he proposed it be named ''A. dentocariosus'' because of the morphological similarities with ''Actinomyces'' species found in the mouth. His study of the isolate showed that it was a highly pleomorphic, facultative anaerobic organism with both coccoid and branched filament structures. <ref name=c>[http://www.ncbi.nlm.nih.gov/pmc/articles/PMC377629/ Brown, J.M., Georg, L.K., and Waters, L.C. (1969) Laboratory Identification of Rothia dentocariosa and Its Occurrence in Human Clinical Materials. Applied Microbiology '''17'''(1): 150-156.]</ref> | ||
In 1957, while studying carious dentine Roth found a similar group of organisms and believed it to be the same as Onisi’s isolate. However, she found the organism to grow under aerobic conditions and therefore suggested the name ''N. dentocariosus''. < | In 1957, while studying carious dentine Roth found a similar group of organisms and believed it to be the same as Onisi’s isolate. However, she found the organism to grow under aerobic conditions and therefore suggested the name ''N. dentocariosus''. <ref name=c/> | ||
Davis and Freer (1960) were unaware of Roth and Onisi’s studies and described a similar group of isolates from the human mouth. They initially suggested the name ''N. salivae'' but further studies of the cell wall showed that this organism did not belong in the ''Nocardia'' genus as it did not contain diaminopimelic acid, which is a characteristic of ''Nocardia'' genus. | Davis and Freer (1960) were unaware of Roth and Onisi’s studies and described a similar group of isolates from the human mouth. They initially suggested the name ''N. salivae'' but further studies of the cell wall showed that this organism did not belong in the ''Nocardia'' genus as it did not contain diaminopimelic acid, which is a characteristic of ''Nocardia'' genus. | ||
Georg and Brown in 1967 created the genus ''Rothia'' in the ''Actinomycetaceae'' family to accommodate this organism. ''Rothia'' was named after Genevieve D. Roth, as a tribute to her work with the organism. < | Georg and Brown in 1967 created the genus ''Rothia'' in the ''Actinomycetaceae'' family to accommodate this organism. ''Rothia'' was named after Genevieve D. Roth, as a tribute to her work with the organism. <ref name=c/> | ||
In 1997, Stackebrandt et al. moved ''Rothia'' to the ''Micrococcaceae'' family where it shares signature nucleotides in the 16S rDNA sequence with other genera in the family. < | In 1997, Stackebrandt et al. moved ''Rothia'' to the ''Micrococcaceae'' family where it shares signature nucleotides in the 16S rDNA sequence with other genera in the family. <ref name=j>[http://ijs.microbiologyresearch.org/content/journal/ijsem/10.1099/00207713-47-2-479 Stackebrandt, E., Rainey, F. A., & Ward-Rainey, N. L. (1997) Proposal for a new hierarchic classification system, Actinobacteria classis nov. International Journal of Systematic and Evolutionary Microbiology '''47'''(2), 479-491.]</ref> | ||
''R. dentocariosa'' is a normal inhabitant of the oral cavity, a study showed over 30% of healthy individuals have this organism in their mouth. < | ''R. dentocariosa'' is a normal inhabitant of the oral cavity, a study showed over 30% of healthy individuals have this organism in their mouth. <ref name=d/> It is present in saliva and is frequently isolated from supragingival plaque and respiratory tract. <ref name=f>[http://www.tandfonline.com.ezproxy.library.uq.edu.au/doi/abs/10.1080/00365540110076877#aHR0cDovL3d3dy50YW5kZm9ubGluZS5jb20uZXpwcm94eS5saWJyYXJ5LnVxLmVkdS5hdS9kb2kvcGRmLzEwLjEwODAvMDAzNjU1NDAxMTAwNzY4Nzc/bmVlZEFjY2Vzcz10cnVlQEBAMA== Salamon, S. A., & Prag, J. (2002) Three cases of Rothia dentocariosa bacteraemia: frequency in Denmark and a review. Scandinavian journal of infectious diseases '''34'''(2): 153-157.]</ref> It is not commonly isolated from clinical specimens but it has been isolated from blood, spinal fluids and abscesses. <ref name=c/> | ||
''R. dentocariosa'' is a gram-positive, non-motile, non-spore forming, pleomorphic organism, that can present in coccoid and/or filamentous forms. < | ''R. dentocariosa'' is a gram-positive, non-motile, non-spore forming, pleomorphic organism, that can present in coccoid and/or filamentous forms. <ref name=g>[http://onlinelibrary.wiley.com/doi/10.1111/j.1469-0691.2004.00784.x/epdf Von Graevenitz, A. (2004) Rothia dentocariosa: taxonomy and differential diagnosis. Clinical microbiology and infection '''10'''(5), 399-402.]</ref><ref name=i>[http://download.springer.com.ezproxy.library.uq.edu.au/static/pdf/504/art%253A10.1007%252FBF02113502.pdf?originUrl=http%3A%2F%2Flink.springer.com%2Farticle%2F10.1007%2FBF02113502&token2=exp=1474471999~acl=%2Fstatic%2Fpdf%2F504%2Fart%25253A10.1007%25252FBF02113502.pdf%3ForiginUrl%3Dhttp%253A%252F%252Flink.springer.com%252Farticle%252F10.1007%252FBF02113502*~hmac=a66b1d89d8fd07df2268b38e17ac3865f542e40d72877ffbb9392e41dd1a9db6 Binder, D., Widmer, U., Opravil, M., Krause, M., & Zbinden, R. (1997) Native and prosthetic valve endocarditis caused by Rothia dentocariosa: Diagnostic and therapeutic considerations. Infection '''25'''(1), 22-26.]</ref> It has a highly variable microscopic morphology. <ref name=c/> | ||
Morphology differs between young and mature colonies. Young colonies are 1mm in diameter, have entire edges and are smooth to a slight rough with a mucoid consistency. While, mature colonies can be 1-4mm, raised with a rough and cerebriform surface irregular or scalloped edges. < | Morphology differs between young and mature colonies. Young colonies are 1mm in diameter, have entire edges and are smooth to a slight rough with a mucoid consistency. While, mature colonies can be 1-4mm, raised with a rough and cerebriform surface irregular or scalloped edges. <ref name=c/> | ||
Laboratory growth of ''R. dentocariosa'' requires an enriched medium, such as TSA, < | Laboratory growth of ''R. dentocariosa'' requires an enriched medium, such as TSA, <ref name=c/> and organic nitrogen, however carbon dioxide is not necessary. <ref name=h>[http://ijs.microbiologyresearch.org.ezproxy.library.uq.edu.au/content/journal/ijsem/10.1099/00207713-17-1-79 Georg, L. K., & Brown, J. M. (1967) Rothia, gen. nov. an aerobic genus of the family Actinomycetaceae. International Journal of Systematic and Evolutionary Microbiology '''17'''(1), 79-88.]</ref> | ||
Studying this organism and determining specific identifiers is important as ''Rothia'' is often overlooked, as a pathogen, < | Studying this organism and determining specific identifiers is important as ''Rothia'' is often overlooked, as a pathogen, <ref name=f/> due to its similarities in morphology with ''Actinomyces'' and ''Nocardia'', which have pathogenic members. <ref name=c/> Isolates of ''R. dentocariosa'' have been found in periodontal lesions and associated with several cases of infective endocarditis. <ref name=i/> | ||
==Genome structure== | ==Genome structure== | ||
''R. dentocariosa'' strain ATCC 17931 has a circular genome with 2, 506, 025 bp and is made up of 1 chromosome. It has a total of 2, 126 genes with 2, 040 coding DNA sequences and encodes 2, 213 proteins. < | ''R. dentocariosa'' strain ATCC 17931 has a circular genome with 2, 506, 025 bp and is made up of 1 chromosome. It has a total of 2, 126 genes with 2, 040 coding DNA sequences and encodes 2, 213 proteins. <ref name=e>[https://www.patricbrc.org/portal/portal/patric/Genome?cType=genome&cId=762948.4 Pathosystems Resource Integration Center]</ref> From a genome annotation, 62 RNA sequences were identified, 10 rRNAs (4, 3 and 3 of 5S, 16S and 23S respectively), 49 tRNAs and 3 ncRNAs. <ref name=k>[http://www.ncbi.nlm.nih.gov/nuccore/NC_014643 Rothia dentocariosa ATCC 17931, complete genome]</ref> | ||
==Cell structure and | ==Cell structure and Metabolism== | ||
As ''R. dentocariosa'' is a gram-positive organism, its cell wall has a defined layer of peptidoglycan of the A3-alpha type, which has D-alanine in position 4, L-lysine in position 3 and an inter-peptide bridge of L-alanine. < | As ''R. dentocariosa'' is a gram-positive organism, its cell wall has a defined layer of peptidoglycan of the A3-alpha type, which has D-alanine in position 4, L-lysine in position 3 and an inter-peptide bridge of L-alanine. <ref name=h/> Analysis of the cell wall showed that the sugars galactose, fructose, glucose and ribose are involved. <ref name=g/> ''R. dentocariosa'' is a non-motile organism and does not have aerial mycelium, making it non-sporogenic. <ref name=i/> | ||
Coaggregation bridging is critically important for the development of microbial plaque and it was observed that ''Bacteroides intermedius'' coaggregates with ''R. dentocariosa'' in the oral microflora. ''Bacteroides'' species is observed several days after on freshly cleaned tooth surface, which recognize microcolonies made by ''Streptococcus sanguis''. ''R. dentocariosa'' attaches to the ''B. intermedius'' and is prevented from washing out of the oral cavity by it’s adherence to the tooth surface, via ''S. sanguis''. < | Coaggregation bridging is critically important for the development of microbial plaque and it was observed that ''Bacteroides intermedius'' coaggregates with ''R. dentocariosa'' in the oral microflora. ''Bacteroides'' species is observed several days after on freshly cleaned tooth surface, which recognize microcolonies made by ''Streptococcus sanguis''. ''R. dentocariosa'' attaches to the ''B. intermedius'' and is prevented from washing out of the oral cavity by it’s adherence to the tooth surface, via ''S. sanguis''. <ref name=l>[http://iai.asm.org/content/48/3/741.full.pdf Kolenbrander, P. E., Andersen, R. N., & Holdeman, L. V. (1985) Coaggregation of oral Bacteroides species with other bacteria: central role in coaggregation bridges and competitions. Infection and immunity '''48'''(3), 741-746.]</ref> | ||
Laboratory testing of the organism’s metabolism showed activity of catalase production, nitrate and nitrite reduction, esculin hydrolysis and acid production from glucose, sucrose, maltose, salicin and glycerol. This can be compared to ''Nocardia'' species, which can oxidise sugars but does not ferment them into acid. < | Laboratory testing of the organism’s metabolism showed activity of catalase production, nitrate and nitrite reduction, esculin hydrolysis and acid production from glucose, sucrose, maltose, salicin and glycerol. This can be compared to ''Nocardia'' species, which can oxidise sugars but does not ferment them into acid. <ref name=c/> ''R. dentocariosa’s'' glucose fermentation also makes it unsuitable for the ''Actinomyces'' species as it produces lactic and acetic acid when ''Actinomyces'' produce succinate. <ref name=f/> | ||
==Ecology== | ==Ecology== | ||
''R. dentocariosa'' is an aerobic organism found in the human oropharynx and upper respiratory tract. <ref name=m>[http://jcm.asm.org/content/52/9/3184.full.pdf Ramanan, P., Barreto, J. N., Osmon, D. R., & Tosh, P. K. (2014) Rothia bacteremia: a 10-year experience at Mayo Clinic, Rochester, Minnesota. Journal of clinical microbiology '''52'''(9), 3184-3189.]</ref> | |||
Its respiratory needs make it distinctive from ''Actinomyces'', as it is not a facultative anaerobe, in addition it differs in morphology when cultured in aerobic conditions. <ref name=c/> | |||
When cultured under anaerobic conditions, development of the filamentous form is stimulated; this form shows a loss of gram positivity. <ref name=c/> | |||
Microbe-host interactions: | Microbe-host interactions: | ||
| Line 54: | Line 53: | ||
==Pathology== | ==Pathology== | ||
''R. dentocariosa'' has been found particularly in patients with [https://en.wikipedia.org/wiki/Periodontal_pathology periodontal disease]. <ref name=f/> | |||
[https://en.wikipedia.org/wiki/Infective_endocarditis Infective endocarditis] is the most predominant and severe clinical manifestation of ''R. dentocariosa'', and case studies also suggest that oral hygiene is a factor. It was also observed that a pre-existing abnormality of the aortic or mitral valve is required for infection. <ref name=i/> | |||
==Application to | ==Application to Biotechnology== | ||
Bioengineering, biotechnologically relevant enzyme/compound production, drug targets,… | Bioengineering, biotechnologically relevant enzyme/compound production, drug targets,… | ||
==Current | ==Current Research== | ||
Recent | Recent articles have been related to specific cases presented in hospital settings, which look at multiple patients presented over a short time period, such as a year. These reports identify unsuccessful diagnoses and investigate what was overlooked in the differential and how successful a diagnosis could be made for ''R. dentocariosa''. <ref name=f/><ref name=i/><ref name=m/> Clinical testing of patient samples can take days to grow cultures and therefore limiting the efficiency and effectiveness of treatment. | ||
==References== | ==References== | ||
<references/> | <references/> | ||
This page is written by Alexandria Chin for the MICR3004 course, Semester 2, 2016 | This page is written by Alexandria Chin for the MICR3004 course, Semester 2, 2016 | ||
Revision as of 17:55, 22 September 2016
Rothia dentocariosa
Alexandria Chin, Bench C, 23 September 2016
Classification
Higher order taxa
Bacteria – Terrabacteria group – Actinobacteria – Actinobacteria – Micrococcales – Micrococcaceae – Rothia [1]
Species
Rothia dentocariosa
Type strain: strain ATCC 17931= CCUG 35437 = CIP 81.83 = DSM 43762 = DSM 46363 = IFO (now NBRC) 12531 = JCM 3067 = NCTC 10917 = NRRL B-8017. [2]
Description and Significance
Rothia dentocariosa was first discovered by Onisi in 1949, from dental plaques and caries in humans. [3] From his study of the organism he proposed it be named A. dentocariosus because of the morphological similarities with Actinomyces species found in the mouth. His study of the isolate showed that it was a highly pleomorphic, facultative anaerobic organism with both coccoid and branched filament structures. [4] In 1957, while studying carious dentine Roth found a similar group of organisms and believed it to be the same as Onisi’s isolate. However, she found the organism to grow under aerobic conditions and therefore suggested the name N. dentocariosus. [4] Davis and Freer (1960) were unaware of Roth and Onisi’s studies and described a similar group of isolates from the human mouth. They initially suggested the name N. salivae but further studies of the cell wall showed that this organism did not belong in the Nocardia genus as it did not contain diaminopimelic acid, which is a characteristic of Nocardia genus. Georg and Brown in 1967 created the genus Rothia in the Actinomycetaceae family to accommodate this organism. Rothia was named after Genevieve D. Roth, as a tribute to her work with the organism. [4] In 1997, Stackebrandt et al. moved Rothia to the Micrococcaceae family where it shares signature nucleotides in the 16S rDNA sequence with other genera in the family. [5]
R. dentocariosa is a normal inhabitant of the oral cavity, a study showed over 30% of healthy individuals have this organism in their mouth. [3] It is present in saliva and is frequently isolated from supragingival plaque and respiratory tract. [6] It is not commonly isolated from clinical specimens but it has been isolated from blood, spinal fluids and abscesses. [4]
R. dentocariosa is a gram-positive, non-motile, non-spore forming, pleomorphic organism, that can present in coccoid and/or filamentous forms. [7][8] It has a highly variable microscopic morphology. [4] Morphology differs between young and mature colonies. Young colonies are 1mm in diameter, have entire edges and are smooth to a slight rough with a mucoid consistency. While, mature colonies can be 1-4mm, raised with a rough and cerebriform surface irregular or scalloped edges. [4] Laboratory growth of R. dentocariosa requires an enriched medium, such as TSA, [4] and organic nitrogen, however carbon dioxide is not necessary. [9]
Studying this organism and determining specific identifiers is important as Rothia is often overlooked, as a pathogen, [6] due to its similarities in morphology with Actinomyces and Nocardia, which have pathogenic members. [4] Isolates of R. dentocariosa have been found in periodontal lesions and associated with several cases of infective endocarditis. [8]
Genome structure
R. dentocariosa strain ATCC 17931 has a circular genome with 2, 506, 025 bp and is made up of 1 chromosome. It has a total of 2, 126 genes with 2, 040 coding DNA sequences and encodes 2, 213 proteins. [10] From a genome annotation, 62 RNA sequences were identified, 10 rRNAs (4, 3 and 3 of 5S, 16S and 23S respectively), 49 tRNAs and 3 ncRNAs. [11]
Cell structure and Metabolism
As R. dentocariosa is a gram-positive organism, its cell wall has a defined layer of peptidoglycan of the A3-alpha type, which has D-alanine in position 4, L-lysine in position 3 and an inter-peptide bridge of L-alanine. [9] Analysis of the cell wall showed that the sugars galactose, fructose, glucose and ribose are involved. [7] R. dentocariosa is a non-motile organism and does not have aerial mycelium, making it non-sporogenic. [8]
Coaggregation bridging is critically important for the development of microbial plaque and it was observed that Bacteroides intermedius coaggregates with R. dentocariosa in the oral microflora. Bacteroides species is observed several days after on freshly cleaned tooth surface, which recognize microcolonies made by Streptococcus sanguis. R. dentocariosa attaches to the B. intermedius and is prevented from washing out of the oral cavity by it’s adherence to the tooth surface, via S. sanguis. [12]
Laboratory testing of the organism’s metabolism showed activity of catalase production, nitrate and nitrite reduction, esculin hydrolysis and acid production from glucose, sucrose, maltose, salicin and glycerol. This can be compared to Nocardia species, which can oxidise sugars but does not ferment them into acid. [4] R. dentocariosa’s glucose fermentation also makes it unsuitable for the Actinomyces species as it produces lactic and acetic acid when Actinomyces produce succinate. [6]
Ecology
R. dentocariosa is an aerobic organism found in the human oropharynx and upper respiratory tract. [13] Its respiratory needs make it distinctive from Actinomyces, as it is not a facultative anaerobe, in addition it differs in morphology when cultured in aerobic conditions. [4] When cultured under anaerobic conditions, development of the filamentous form is stimulated; this form shows a loss of gram positivity. [4]
Microbe-host interactions:
Pathology
R. dentocariosa has been found particularly in patients with periodontal disease. [6] Infective endocarditis is the most predominant and severe clinical manifestation of R. dentocariosa, and case studies also suggest that oral hygiene is a factor. It was also observed that a pre-existing abnormality of the aortic or mitral valve is required for infection. [8]
Application to Biotechnology
Bioengineering, biotechnologically relevant enzyme/compound production, drug targets,…
Current Research
Recent articles have been related to specific cases presented in hospital settings, which look at multiple patients presented over a short time period, such as a year. These reports identify unsuccessful diagnoses and investigate what was overlooked in the differential and how successful a diagnosis could be made for R. dentocariosa. [6][8][13] Clinical testing of patient samples can take days to grow cultures and therefore limiting the efficiency and effectiveness of treatment.
References
- ↑ NCBI Taxonomy Browser
- ↑ List of Prokaryotic Names with Standing in Nomenclature
- ↑ 3.0 3.1 Ferraz, V., McCarthy, K., Smith, D., Koornhof, HJ. (1998) Rothia dentocariosa endocarditis and aortic root abscess. Journal of Infection 37(3): 292-295.
- ↑ 4.00 4.01 4.02 4.03 4.04 4.05 4.06 4.07 4.08 4.09 4.10 Brown, J.M., Georg, L.K., and Waters, L.C. (1969) Laboratory Identification of Rothia dentocariosa and Its Occurrence in Human Clinical Materials. Applied Microbiology 17(1): 150-156.
- ↑ Stackebrandt, E., Rainey, F. A., & Ward-Rainey, N. L. (1997) Proposal for a new hierarchic classification system, Actinobacteria classis nov. International Journal of Systematic and Evolutionary Microbiology 47(2), 479-491.
- ↑ 6.0 6.1 6.2 6.3 6.4 Salamon, S. A., & Prag, J. (2002) Three cases of Rothia dentocariosa bacteraemia: frequency in Denmark and a review. Scandinavian journal of infectious diseases 34(2): 153-157.
- ↑ 7.0 7.1 Von Graevenitz, A. (2004) Rothia dentocariosa: taxonomy and differential diagnosis. Clinical microbiology and infection 10(5), 399-402.
- ↑ 8.0 8.1 8.2 8.3 8.4 Binder, D., Widmer, U., Opravil, M., Krause, M., & Zbinden, R. (1997) Native and prosthetic valve endocarditis caused by Rothia dentocariosa: Diagnostic and therapeutic considerations. Infection 25(1), 22-26.
- ↑ 9.0 9.1 Georg, L. K., & Brown, J. M. (1967) Rothia, gen. nov. an aerobic genus of the family Actinomycetaceae. International Journal of Systematic and Evolutionary Microbiology 17(1), 79-88.
- ↑ Pathosystems Resource Integration Center
- ↑ Rothia dentocariosa ATCC 17931, complete genome
- ↑ Kolenbrander, P. E., Andersen, R. N., & Holdeman, L. V. (1985) Coaggregation of oral Bacteroides species with other bacteria: central role in coaggregation bridges and competitions. Infection and immunity 48(3), 741-746.
- ↑ 13.0 13.1 Ramanan, P., Barreto, J. N., Osmon, D. R., & Tosh, P. K. (2014) Rothia bacteremia: a 10-year experience at Mayo Clinic, Rochester, Minnesota. Journal of clinical microbiology 52(9), 3184-3189.
This page is written by Alexandria Chin for the MICR3004 course, Semester 2, 2016
