Polysphondylium pallidum: Difference between revisions
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==Genome Structure== | ==Genome Structure== | ||
''P. pallidum'' is predicted to contain seven linear chromosomes during the sexual, haploid stage of its lifecycle. The total genome size of these seven chromosomes is about 33Mbp, representing 12.3k coding sequences with an average gene length of 1.6kb, 32% G/C content, and a telomeric repeat sequence of TAAGGG. (2) ''P. pallidum'' is also predicted to contain a 48kb mitochrondrial genome. (2) Additionally the PPN500 strain of ''P. pallidum'', which is commonly used in research, contains a 27kb circular plasmid with 11 predicted coding sequences. (3) | |||
''P. pallidum'' is predicted to have diverged alongside ''Dictyostelium discoideum'' and ''Dictyostelium fasciculatum'' from a recent common ancestor about 0.6 billion years ago. (2) The ''P. pallidum'' genome contains comparably fewer transposable elements and shows high conservation of genes related primary metabolism, cytoskeletal function, and signal transduction compared to other Dictyosteliidae. Notable proteins that have been predicted in ''P. pallidum'' include polyketide synthases, which can be used to produce antibiotics and fungicides from secondary metabolites; calcium-dependent cell-adhesion proteins, which allow for extracellular cell adhesion; LagBC homologs, which are used for kin discrimination in ''D. discoideum''; and cAMP/cGMP adenylyl cyclases ACA, ACB, ACG, sGC, and GCA. (2) cAMP and cGMP in Dictyosteliidae are secreted as signalling molecules during chemotactic cell aggregation. | |||
==Cell Structure, Metabolism and Life Cycle== | ==Cell Structure, Metabolism and Life Cycle== | ||
Revision as of 02:16, 25 April 2017
Classification
Domain; Phylum; Class; Order; family [Others may be used. Use NCBI link to find]
Species
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NCBI: Taxonomy |
Genus species
Description and Significance
Polysphondylium pallidum was first described by Edgar W. Olive in 1901 as growing on the dung of a donkey, muskrat, and rabbit in Liberia (2,4).
Polysphondylium pallidum is a cellular slime mold of the phylum Mycetozoa. It begins its life as a single-celled amoeboid protist and lives in feces, soil, and other organic matter (1). Like other cellular slime molds, P. pallidum can reproduce both sexually and asexually depending on its environmental conditions (1) and has two distinct stages of its life cycle: a vegetative non-social stage and an aggregate phase which is cued by starvation (5).
Biologists have been particularly interested in cellular slime molds because their asexual cycles model cell differentiation in eukaryotes (2,3). With their simple and easy-to-manipulate systems, cellular slime molds provide insight into the formation of multicellular organisms (2). P. pallidum in particular has been used a variety of experiments because of its high levels of germination compared to other sexually reproducing slime molds, making it useful for studies of transmission patterns (3).
Genome Structure
P. pallidum is predicted to contain seven linear chromosomes during the sexual, haploid stage of its lifecycle. The total genome size of these seven chromosomes is about 33Mbp, representing 12.3k coding sequences with an average gene length of 1.6kb, 32% G/C content, and a telomeric repeat sequence of TAAGGG. (2) P. pallidum is also predicted to contain a 48kb mitochrondrial genome. (2) Additionally the PPN500 strain of P. pallidum, which is commonly used in research, contains a 27kb circular plasmid with 11 predicted coding sequences. (3)
P. pallidum is predicted to have diverged alongside Dictyostelium discoideum and Dictyostelium fasciculatum from a recent common ancestor about 0.6 billion years ago. (2) The P. pallidum genome contains comparably fewer transposable elements and shows high conservation of genes related primary metabolism, cytoskeletal function, and signal transduction compared to other Dictyosteliidae. Notable proteins that have been predicted in P. pallidum include polyketide synthases, which can be used to produce antibiotics and fungicides from secondary metabolites; calcium-dependent cell-adhesion proteins, which allow for extracellular cell adhesion; LagBC homologs, which are used for kin discrimination in D. discoideum; and cAMP/cGMP adenylyl cyclases ACA, ACB, ACG, sGC, and GCA. (2) cAMP and cGMP in Dictyosteliidae are secreted as signalling molecules during chemotactic cell aggregation.
Cell Structure, Metabolism and Life Cycle
Interesting features of cell structure; how it gains energy; what important molecules it produces.
Ecology and Pathogenesis
Habitat; symbiosis; biogeochemical significance; contributions to environment.
If relevant, how does this organism cause disease? Human, animal, plant hosts? Virulence factors, as well as patient symptoms.
References
- Encyclopedia of Life: Polysphondylium pallidum
- University of Califronia: Introduction to Slime Molds
- Mirfakhrai, M., Tanaka, Y., & Yanagisawa, K. (1990). Evidence for mitochondrial DNA polymorphism and uniparental inheritance in the cellular slime mold Polysphondylium pallidum: effect of intraspecies mating on mitochondrial DNA transmission. Genetics, 124(3), 607-613.
- Olive, Edgar W. (1901). "A preliminary enumeration of the Sorophoreae". Proceedings of the American Academy of Arts and Sciences 37 (12): 333–344. doi:10.2307/20021671.
- Rosen, S. D., Simpson, D. L., Rose, J. E., & Barondes, S. H. (1974). Carbohydrate-binding protein from Polysphondylium pallidum implicated in intercellular adhesion. Nature, 252(5479), 128-151.
Author
Page authored by Benjamin Braude and Alexandra Canzoneri, students of Prof. Jay Lennon at Indiana University.
