Gramella forsetii: Difference between revisions
| Line 16: | Line 16: | ||
==Genome structure== | ==Genome structure== | ||
'Gramella forsetii' KT0803. | 'Gramella forsetii' KT0803. | ||
Size: 3 Mb; Chromosome: 1 | Size: 3 Mb; Chromosome: 1 | ||
Analysis of the genomes reveal a substantial suite of genes that encode hydrolytic enzymes They are a predicted preference for polymeric carbon sources and a distinct capability for surface adhesion. | |||
==Cell structure and metabolism== | ==Cell structure and metabolism== | ||
Revision as of 23:23, 4 June 2007
A Microbial Biorealm page on the genus Gramella forsetii
Classification
Higher order taxa
Kingdom: Bacteria; Group: Bacteroidetes/Chlorobi; Phylum: formerly Cytophaga-Flavobacteria-Bacteroides(CFB)
Species
Gramella Genus
Description and significance
This specie was first found and isolated from concentrated seawater collected in the German Bight of the North Sea during a phytoplankton bloom. They represent significant part of free-living microbial assemblages in nutrient-rich microenvironments. Organisms of this group are significant in that they specialize in degradation of high molecular weight compounds in both the dissolved and particulate fraction of the marine organic matter pool. Thus, they hold a major role of Bacteroidetes in the marine carbon cycle.
Genome structure
'Gramella forsetii' KT0803. Size: 3 Mb; Chromosome: 1 Analysis of the genomes reveal a substantial suite of genes that encode hydrolytic enzymes They are a predicted preference for polymeric carbon sources and a distinct capability for surface adhesion.
Cell structure and metabolism
Cell Structure: Gram Negative; Shape: Rod; Environment: Non-halophilic, Aerobic, Multiple Habitat, Mesophilic
Functional analysis of the predicted proteome disclosed several traits which in joint consideration suggest a clear adaptation of this marine Bacteroidetes representative to the degradation of high molecular weight organic matter, such as a substantial suite of genes encoding hydrolytic enzymes, a predicted preference for polymeric carbon sources and a distinct capability for surface adhesion.
Describe any interesting features and/or cell structures; how it gains energy; what important molecules it produces.
Ecology
Whole genome analysis of the marine Bacteroidetes'Gramella forsetii' reveals adaptations to degradation of polymeric organic matter.
Describe any interactions with other organisms (included eukaryotes), contributions to the environment, effect on environment, etc.
Pathology
How does this organism cause disease? Human, animal, plant hosts? Virulence factors, as well as patient symptoms.
Application to Biotechnology
Their ability to degrade high molecular weight compounds in both the dissolved and particulate fraction of the marine organic matter pool proves Bacteroidetes' significant contribution in the marine carbon cycle.
Does this organism produce any useful compounds or enzymes? What are they and how are they used?
Current Research
Members of the Bacteroidetes, formerly known as the Cytophaga-Flavobacteria-Bacteroides (CFB) phylum, are among the major taxa of marine heterotrophic bacterioplankton frequently found on macroscopic organic matter particles (marine snow). In addition, they have been shown to also represent a significant part of free-living microbial assemblages in nutrient-rich microenvironments. Their abundance and distribution pattern in combination with enzymatic activity studies has led to the notion that organisms of this group are specialists for degradation of high molecular weight compounds in both the dissolved and particulate fraction of the marine organic matter pool, implying a major role of Bacteroidetes in the marine carbon cycle. Despite their ecological importance, comprehensive molecular data on organisms of this group have been scarce so far. Here we report on the first whole genome analysis of a marine Bacteroidetes representative, 'Gramella forsetii' KT0803. Functional analysis of the predicted proteome disclosed several traits which in joint consideration suggest a clear adaptation of this marine Bacteroidetes representative to the degradation of high molecular weight organic matter, such as a substantial suite of genes encoding hydrolytic enzymes, a predicted preference for polymeric carbon sources and a distinct capability for surface adhesion.
Enter summaries of the most recent research here--at least three required
References
Edited by student of Rachel Larsen and Kit Pogliano
