Metallosphaera yellowstonensis: Difference between revisions
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==Cell Structure, Metabolism and Life Cycle== | ==Cell Structure, Metabolism and Life Cycle== | ||
Interesting features of cell structure; how it gains energy; what important molecules it produces. | Interesting features of cell structure; how it gains energy; what important molecules it produces. | ||
M. yellowstonesis can utilize different sulfur compounds (sulfide, elemental sulfur, thiosulfate) derived from hotsprings and continental solfataras as an energy source. Additionally, M. yellowstonesis is capable of iron oxidation (fox genes), and also posses an abundant amount of carbohydrate active enzymes that encode for:glycolysis, gluconeogenesis, archaeal pentose phosphate pathway, an atypical TCA cycle, and complete non-phosphative and semi phosphorylative entner doudoroff pathways (Wang). Additionally, M. yellowstonesis has putative type I carbon monoxide dehydrogenase. M. yellowstonesis can also perform assimilatory nitrate reduction, with genes for nitrate and nitrite reductases. Unique from the rest of the genus, M. yellowstonensis MK1 also posesses an operon encoding for dissimilatory nitrate reductase. (wang) | M. yellowstonesis can utilize different sulfur compounds (sulfide, elemental sulfur, thiosulfate) derived from hotsprings and continental solfataras as an energy source. Additionally, M. yellowstonesis is capable of iron oxidation (fox genes), and also posses an abundant amount of carbohydrate active enzymes that encode for:glycolysis, gluconeogenesis, archaeal pentose phosphate pathway, an atypical TCA cycle, and complete non-phosphative and semi phosphorylative entner doudoroff pathways (Wang). | ||
M. yellowstonensis is unable to fix CO2 or CO to obtain carbon, and thus this must be obtained from autotrophic organisms present in the spring (Kozubal et.al). | |||
Additionally, M. yellowstonesis has putative type I carbon monoxide dehydrogenase. M. yellowstonesis can also perform assimilatory nitrate reduction, with genes for nitrate and nitrite reductases. Unique from the rest of the genus, M. yellowstonensis MK1 also posesses an operon encoding for dissimilatory nitrate reductase. (wang) | |||
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If relevant, how does this organism cause disease? Human, animal, plant hosts? Virulence factors, as well as patient symptoms.<br><br> | If relevant, how does this organism cause disease? Human, animal, plant hosts? Virulence factors, as well as patient symptoms.<br><br> | ||
M. yellowstonensis is found in microbial mats, which are highly diverse communities that can | M. yellowstonensis is found in microbial mats (acidic ferric iron mats), which are highly diverse communities that can provide an extreme environment with low pH, high temperatures, low amounts of oxygen, and high concentrations of reduced iron (Kozubal et.al) Different organisms create the ribbons of color seen in the mats. In these mats millions of microbes can connect into long fillaments, or thick sturdy structures coated by chemical precipitates. https://www.nps.gov/yell/learn/nature/thermophilic-communities.htm | ||
M. yellowstonensis produces EPS, which can be utilized in biofilm formation, and adhesion generally assisting in colonization, solubizing minerals, and increased protection form the environment. It also maintains a unique flagellum composition/mode of assembly different from that of bacteria found in the crenarchael flagellin and accessory proteins. | M. yellowstonensis produces EPS, which can be utilized in biofilm formation, and adhesion generally assisting in colonization, solubizing minerals, and increased protection form the environment. It also maintains a unique flagellum composition/mode of assembly different from that of bacteria found in the crenarchael flagellin and accessory proteins. | ||
Revision as of 15:38, 13 April 2024
Classification
Archaea (Domain); (Superphylum) TACK group "Crenarchaeota"; Thermoproteota (Phylum); Thermoprotei (Class); Sulfolobales (Order); Sulfolobaceae (Family); Metallosphaera (Genus)
Species
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NCBI: [1] |
Metallosphaera yellowstonensis [[File:|200px|thumb|left|Caption]]
Description and Significance
This is a coccus-shaped chemolithoautotroph isolated from the hot springs of Yellowstone National Park (Kozubal, et. al). M. yellowstonensis exists in Fe(II)-oxidizing microbial mats. This microorganism has implications for the origin of eukaryotes as well as insight into unique metabolic pathways in extreme environments (Jennings, et. al).
Genome Structure
Describe the size and content of the genome. How many chromosomes? Circular or linear? Other interesting features? What is known about its sequence?
M. yellowstonensis is an archaea, thus its genome resembles that of bacteria in that is circular. Most genes throughout the genome average around 1kbp in length. Additionally, these genes tend to be adjacent to neighboring genes/separated by less than 200bp. This results in high density coding regions and minimal noncoding regions. ........ https://www.sciencedirect.com/topics/biochemistry-genetics-and-molecular-biology/archaeal-genome
M. yellowstonensis possess the largest genome of the known Mettallosphaera speceis at 2.82 Mb. Throughout the genus, GC contents range from 42.0-50.4%. (wang)
There are ~283 transposon sequences per genome found in M. yellowstonensis. These sequences can provide extra functionalities though HGT events and extra protection form the danger of the hot spring environment. (wang)
Cell Structure, Metabolism and Life Cycle
Interesting features of cell structure; how it gains energy; what important molecules it produces. M. yellowstonesis can utilize different sulfur compounds (sulfide, elemental sulfur, thiosulfate) derived from hotsprings and continental solfataras as an energy source. Additionally, M. yellowstonesis is capable of iron oxidation (fox genes), and also posses an abundant amount of carbohydrate active enzymes that encode for:glycolysis, gluconeogenesis, archaeal pentose phosphate pathway, an atypical TCA cycle, and complete non-phosphative and semi phosphorylative entner doudoroff pathways (Wang).
M. yellowstonensis is unable to fix CO2 or CO to obtain carbon, and thus this must be obtained from autotrophic organisms present in the spring (Kozubal et.al).
Additionally, M. yellowstonesis has putative type I carbon monoxide dehydrogenase. M. yellowstonesis can also perform assimilatory nitrate reduction, with genes for nitrate and nitrite reductases. Unique from the rest of the genus, M. yellowstonensis MK1 also posesses an operon encoding for dissimilatory nitrate reductase. (wang)
Ecology and Pathogenesis
Habitat; symbiosis; biogeochemical significance; contributions to environment.
If relevant, how does this organism cause disease? Human, animal, plant hosts? Virulence factors, as well as patient symptoms.
M. yellowstonensis is found in microbial mats (acidic ferric iron mats), which are highly diverse communities that can provide an extreme environment with low pH, high temperatures, low amounts of oxygen, and high concentrations of reduced iron (Kozubal et.al) Different organisms create the ribbons of color seen in the mats. In these mats millions of microbes can connect into long fillaments, or thick sturdy structures coated by chemical precipitates. https://www.nps.gov/yell/learn/nature/thermophilic-communities.htm
M. yellowstonensis produces EPS, which can be utilized in biofilm formation, and adhesion generally assisting in colonization, solubizing minerals, and increased protection form the environment. It also maintains a unique flagellum composition/mode of assembly different from that of bacteria found in the crenarchael flagellin and accessory proteins.
M. yellowstonensis has the ability to survive in natural/anthropogenic metal-rich environments. Unique from its genus, yellowstonensis posesses an alkylmercury lyase, which is important for mercury detoxification.
References
The archaeal ‘TACK’ superphylum and the origin of eukaryotes, https://www.sciencedirect.com/science/article/pii/S0966842X11001740?via%3Dihub
Linking geochemical processes with microbial community analysis: successional dynamics in an arsenic-rich, acid-sulphate-chloride geothermal spring, https://onlinelibrary.wiley.com/doi/full/10.1111/j.1472-4677.2004.00032.x
Summary of Metallosphaera yellowstonensis MK1, version 28.0. https://biocyc.org/GCF_000243315/organism-summary
General archaeal info: https://www.sciencedirect.com/topics/biochemistry-genetics-and-molecular-biology/archaeal-genome
Wang article: https://www.sciencedirect.com/topics/biochemistry-genetics-and-molecular-biology/archaeal-genome
sequence and shape info: https://www.ncbi.nlm.nih.gov/nuccore/NZ_JH597761
microbial mat stuff: https://www.nps.gov/yell/learn/nature/thermophilic-communities.htm
Author
Page authored by _____, student of Prof. Jay Lennon at IndianaUniversity.
