Geobacter metallireducens: Difference between revisions
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==Description and significance== | ==Description and significance== | ||
''Geobacter metallireducens'' is a rod shaped, gram negative, anaerobic bacteria and can be seen to have flagella and pili. The first ''G. metallireducens'' (initially known as strain GS-15) was first isolated from freshwater sediment, and was able to gain energy through dissimilatory reduction of iron, manganese, uranium and other metals [1]. This organism was the first organism found to oxidize organic compounds to carbon dioxide with iron oxides as the electron acceptor [1]. ''G. metallireducens'' can also oxidize short chain fatty acids, alcohols, and monoaromatic compounds such as toluene and phenol using iron as its electron acceptor | ''Geobacter metallireducens'' is a rod shaped, gram negative, anaerobic bacteria and can be seen to have flagella and pili. The first ''G. metallireducens'' (initially known as strain GS-15) was first isolated from freshwater sediment, and was able to gain energy through dissimilatory reduction of iron, manganese, uranium and other metals [1]. This organism was the first organism found to oxidize organic compounds to carbon dioxide with iron oxides as the electron acceptor [1]. ''G. metallireducens'' can also oxidize short chain fatty acids, alcohols, and monoaromatic compounds such as toluene and phenol using iron as its electron acceptor [2]. ''G. metallireducens'' also plays a role in carbon and nutrient cycling and bioremediation, enabling the metabolism of soluble harmful (sometimes radioactive) contaminants into insoluble harmless forms. | ||
==Genome structure== | ==Genome structure== | ||
The genome of ''G. metallireducens''is 4.01 Mbp long with a circular chromosome length of 3,997,420 bp encoding 3,621 genes with a GC content of 59.51% and a plasmid of 13,762bp encoding 13 genes with a GC content of 52.48% | The genome of ''G. metallireducens''is 4.01 Mbp long with a circular chromosome length of 3,997,420 bp encoding 3,621 genes with a GC content of 59.51% and a plasmid of 13,762bp encoding 13 genes with a GC content of 52.48% [3]. The plasmid contains a gene for an addiction module toxin, RelE/StbE, which produces toxin and gives resistance to the bacteria. The plasmid also contains a gene that encodes for a plasmid stabilization system protein, RelE/ParE, that allows the bacteria to adapt to new environmental conditions (a change in nutrients) [4]. | ||
==Cell structure and metabolism== | ==Cell structure and metabolism== | ||
''G. metallireducens'' contains genes for flagella synthesis. ''G. metallireducens'' was originally thought to be immotile because they were grown in labs under ideal conditions where the bacteria had plenty of soluble metals. Synthesis for flagella do not initiate unless nutrient conditions are poor. Under conditions where soluble metals were replaced with less favorable iron oxide, ''G. metallireducens'' was seen to grow flagella and swim | ''G. metallireducens'' contains genes for flagella synthesis. ''G. metallireducens'' was originally thought to be immotile because they were grown in labs under ideal conditions where the bacteria had plenty of soluble metals. Synthesis for flagella do not initiate unless nutrient conditions are poor. Under conditions where soluble metals were replaced with less favorable iron oxide, ''G. metallireducens'' was seen to grow flagella and swim [5]. | ||
''G. metallireducens'' also contains genes that allow the bacteria the ability of chemotaxis. Chemotaxis allows ''G. metallireducens'' to sense compounds, favorable and unfavorable, in its surrounding environment. Together with the ability to perform chemotaxis and produce and use flagella, ''G. metallireducens'' has the ability to move towards metallic compounds or favorable environments where nutrient supply is favorable and away from less favorable environments where nutrient supply is poor | ''G. metallireducens'' also contains genes that allow the bacteria the ability of chemotaxis. Chemotaxis allows ''G. metallireducens'' to sense compounds, favorable and unfavorable, in its surrounding environment. Together with the ability to perform chemotaxis and produce and use flagella, ''G. metallireducens'' has the ability to move towards metallic compounds or favorable environments where nutrient supply is favorable and away from less favorable environments where nutrient supply is poor [5]. | ||
Previous experiments on bacteria that can perform electron transfer to Fe(III) have focused on the role of outer-membrane c-type cytochromes | Previous experiments on bacteria that can perform electron transfer to Fe(III) have focused on the role of outer-membrane c-type cytochromes [6]. However, some Fe(III) reducers lack c-cytochromes. ''Geobacter'' species are examples of such Fe(III) reducers that lack c-cytochromes and must directly contact Fe(III) oxides to reduce them [6]. They produce pili that were proposed to aid in establishing contact with the Fe(III) oxides [6]. | ||
''G. metallireducens'' favors or is chemotactic to soluble electron acceptors Fe(II) and Mn(II) and expresses flagella and pili only when grown on insoluble Fe(III) or Mn(IV) oxide [5]. These results suggest that ''G. metallireducens'' senses when soluble electron acceptors are depleted and will promote synthesis of flagella and pili allowing it to search for, and establish contact with, insoluble Fe(III) or Mn(IV) oxide [5]. | |||
''G. metallireducens'' favors or is chemotactic to soluble electron acceptors Fe(II) and Mn(II) and expresses flagella and pili only when grown on insoluble Fe(III) or Mn(IV) oxide | |||
==Ecology== | ==Ecology== | ||
''G. metallireducens'' has been known to take part in bioremediation of organic and metal contaminants in groundwater and participates in the carbon and nutrient cycles of aquatic sediments. Aside from using Fe(III) oxides, the ''G. metallireducens'' uses metals such as plutonium and uranium to metabolize food. ''G. metallireducens'' consumes these radioactive elements and breaks down the contaminants. In the case of uranium, it changes the metal from a soluble to an insoluble form. The insoluble uranium drops out of the groundwater, thus decontaminating streams and drinking water. It remains in the soil and could then be extracted | ''G. metallireducens'' has been known to take part in bioremediation of organic and metal contaminants in groundwater and participates in the carbon and nutrient cycles of aquatic sediments. Aside from using Fe(III) oxides, the ''G. metallireducens'' uses metals such as plutonium and uranium to metabolize food. ''G. metallireducens'' consumes these radioactive elements and breaks down the contaminants. In the case of uranium, it changes the metal from a soluble to an insoluble form. The insoluble uranium drops out of the groundwater, thus decontaminating streams and drinking water. It remains in the soil and could then be extracted [5]. The use of an insoluble electron acceptor may explain why ''Geobacter'' species predominate over other Fe(III) oxide-reducing microorganisms in a wide variety of sedimentary environments. | ||
Describe any interactions with other organisms (included eukaryotes), contributions to the environment, effect on environment, etc. | Describe any interactions with other organisms (included eukaryotes), contributions to the environment, effect on environment, etc. | ||
==Application to Biotechnology== | ==Application to Biotechnology== | ||
In ''G. metallireducens''' relative species, ''Geobacter sulfurreducens'', conducting-probe atomic force microscopy revealed that the pili were highly conductive. Results from experimentation on pili of ''G. sulfurreducens'' might serve as biological nanowires, transferring electrons from the cell surface to the surface of Fe(III) oxides | In ''G. metallireducens''' relative species, ''Geobacter sulfurreducens'', conducting-probe atomic force microscopy revealed that the pili were highly conductive. Results from experimentation on pili of ''G. sulfurreducens'' might serve as biological nanowires, transferring electrons from the cell surface to the surface of Fe(III) oxides [6]. The ability of electron transfer through pili indicates possibilities for other unique cell-surface and cell-cell interactions, and for bioengineering of new conductive materials [6]. | ||
==Current Research== | ==Current Research== | ||
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==References== | ==References== | ||
[http://www.pubmedcentral.nih.gov/picrender.fcgi?tool=pmcentrez&blobtype=pdf&artid=202682 | [http://www.pubmedcentral.nih.gov/picrender.fcgi?tool=pmcentrez&blobtype=pdf&artid=202682 1. Lovley DR and Phillips EJ. "Novel Mode of Microbial Energy Metabolism: Organic Carbon Oxidation Coupled to Dissimilatory Reduction of Iron or Manganese". ''Applied and Environmental Microbiology''. 1988. Volume 54, No. 6, p. 1472-1480.] | ||
[http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=8387263&dopt=Abstract 2. Lovley DR, Giovannoni SJ, White DC, Champine JE, Phillips EJ, Gorby YA,Goodwin S. "Geobacter metallireducens gen. nov. sp. nov., a microorganism capable of coupling the complete oxidation of organic compounds to the reduction of iron and other metals." Arch Microbiol. 1993. Volume 159. No.4. p. 336-344.] | |||
[http:// | [http://archaea.ucsc.edu/cgi-bin/hgGateway?db=geobMeta_GS15_1 3. Schneider KL, Pollard KS, Baertsch R, Pohl A and Lowe TM. "Geobacter metallireducens (Geobacter metallireducens GS-15) Genome Browser Gateway". The UCSC Archaeal Genome Browser. 2006. Volume 43. Database issue D407-D410.] | ||
[http:// | [http://rice.tigr.org/tigr-scripts/CMR2/hit_to_all_db.spl?acc=TIGR02385 4. "All Database hits to TIGR02385". The Institute for Genomic Research. 2004. ] | ||
[http:// | [http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=pubmed&cmd=Retrieve&dopt=AbstractPlus&list_uids=11961561&itool=iconabstr&query_hl=11&itool=pubmed_docsum 5. Childers SE, Ciufo S, Lovley DR. "Geobacter metallireducens accesses insoluble Fe(III) oxide by chemotaxis". Nature. 2002. Volume 416. p. 767-769.] | ||
[http:// | [http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15973408 6. Reguera G, McCarthy KD, Mehta T, Nicoll JS, Tuominen MT, Lovley DR. "Extracellular electron transfer via microbial nanowires". Nature. 2005. Volume 435. p. 1098-1101.] | ||
Edited by Christine Tang student of [mailto:ralarsen@ucsd.edu Rachel Larsen] and Kit Pogliano | Edited by Christine Tang student of [mailto:ralarsen@ucsd.edu Rachel Larsen] and Kit Pogliano | ||
Revision as of 08:20, 5 June 2007
Template:Geobacter metallireducens
Classification
Higher order taxa
Bacteria; Proteobacteria; Delta Proteobacteria; Desulferomonadales; Geobacteraceae
Species
Geobacter metallireducens
Description and significance
Geobacter metallireducens is a rod shaped, gram negative, anaerobic bacteria and can be seen to have flagella and pili. The first G. metallireducens (initially known as strain GS-15) was first isolated from freshwater sediment, and was able to gain energy through dissimilatory reduction of iron, manganese, uranium and other metals [1]. This organism was the first organism found to oxidize organic compounds to carbon dioxide with iron oxides as the electron acceptor [1]. G. metallireducens can also oxidize short chain fatty acids, alcohols, and monoaromatic compounds such as toluene and phenol using iron as its electron acceptor [2]. G. metallireducens also plays a role in carbon and nutrient cycling and bioremediation, enabling the metabolism of soluble harmful (sometimes radioactive) contaminants into insoluble harmless forms.
Genome structure
The genome of G. metallireducensis 4.01 Mbp long with a circular chromosome length of 3,997,420 bp encoding 3,621 genes with a GC content of 59.51% and a plasmid of 13,762bp encoding 13 genes with a GC content of 52.48% [3]. The plasmid contains a gene for an addiction module toxin, RelE/StbE, which produces toxin and gives resistance to the bacteria. The plasmid also contains a gene that encodes for a plasmid stabilization system protein, RelE/ParE, that allows the bacteria to adapt to new environmental conditions (a change in nutrients) [4].
Cell structure and metabolism
G. metallireducens contains genes for flagella synthesis. G. metallireducens was originally thought to be immotile because they were grown in labs under ideal conditions where the bacteria had plenty of soluble metals. Synthesis for flagella do not initiate unless nutrient conditions are poor. Under conditions where soluble metals were replaced with less favorable iron oxide, G. metallireducens was seen to grow flagella and swim [5].
G. metallireducens also contains genes that allow the bacteria the ability of chemotaxis. Chemotaxis allows G. metallireducens to sense compounds, favorable and unfavorable, in its surrounding environment. Together with the ability to perform chemotaxis and produce and use flagella, G. metallireducens has the ability to move towards metallic compounds or favorable environments where nutrient supply is favorable and away from less favorable environments where nutrient supply is poor [5].
Previous experiments on bacteria that can perform electron transfer to Fe(III) have focused on the role of outer-membrane c-type cytochromes [6]. However, some Fe(III) reducers lack c-cytochromes. Geobacter species are examples of such Fe(III) reducers that lack c-cytochromes and must directly contact Fe(III) oxides to reduce them [6]. They produce pili that were proposed to aid in establishing contact with the Fe(III) oxides [6]. G. metallireducens favors or is chemotactic to soluble electron acceptors Fe(II) and Mn(II) and expresses flagella and pili only when grown on insoluble Fe(III) or Mn(IV) oxide [5]. These results suggest that G. metallireducens senses when soluble electron acceptors are depleted and will promote synthesis of flagella and pili allowing it to search for, and establish contact with, insoluble Fe(III) or Mn(IV) oxide [5].
Ecology
G. metallireducens has been known to take part in bioremediation of organic and metal contaminants in groundwater and participates in the carbon and nutrient cycles of aquatic sediments. Aside from using Fe(III) oxides, the G. metallireducens uses metals such as plutonium and uranium to metabolize food. G. metallireducens consumes these radioactive elements and breaks down the contaminants. In the case of uranium, it changes the metal from a soluble to an insoluble form. The insoluble uranium drops out of the groundwater, thus decontaminating streams and drinking water. It remains in the soil and could then be extracted [5]. The use of an insoluble electron acceptor may explain why Geobacter species predominate over other Fe(III) oxide-reducing microorganisms in a wide variety of sedimentary environments.
Describe any interactions with other organisms (included eukaryotes), contributions to the environment, effect on environment, etc.
Application to Biotechnology
In G. metallireducens' relative species, Geobacter sulfurreducens, conducting-probe atomic force microscopy revealed that the pili were highly conductive. Results from experimentation on pili of G. sulfurreducens might serve as biological nanowires, transferring electrons from the cell surface to the surface of Fe(III) oxides [6]. The ability of electron transfer through pili indicates possibilities for other unique cell-surface and cell-cell interactions, and for bioengineering of new conductive materials [6].
Current Research
Enter summaries of the most recent research here--at least three required
References
4. "All Database hits to TIGR02385". The Institute for Genomic Research. 2004.
Edited by Christine Tang student of Rachel Larsen and Kit Pogliano
