Bdellovibrio bacteriovorus: Difference between revisions
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The sequencing of the ''B. bacteriovorus HD100'' genome was completed on 01/31/2004. The complete genome consists of a single circular chromosome that is 3,782,950 nucleotides long. The entire genome has a 50% GC content and contains 3629 genes which codes for 3587 proteins and 42 structural RNAs.(4) | The sequencing of the ''B. bacteriovorus HD100'' genome was completed on 01/31/2004. The complete genome consists of a single circular chromosome that is 3,782,950 nucleotides long. The entire genome has a 50% GC content and contains 3629 genes which codes for 3587 proteins and 42 structural RNAs.(4) | ||
Of the large number of proteins that the ''B. bacteriovorus'' genome encodes, many of them are degradative and lytic enzymes(2). These enzymes are necessary for ''B. bacteriovorus'' to breakdown its host or prey cell. Some of these enzymes needs to be secreted out of ''B. bacteriovorus'' and into its | Of the large number of proteins that the ''B. bacteriovorus'' genome encodes, many of them are degradative and lytic enzymes(2). These enzymes are necessary for ''B. bacteriovorus'' to breakdown its host or prey cell. Some of these enzymes needs to be secreted out of ''B. bacteriovorus'' and into its prey cell, while degradative products needs to be transported into the ''B. bacteriovorus'' from the prey cell cytoplasm. Therefore, the genome of ''B. bacteriovorus'' also includes a large amount of transport proteins. In fact, ''B. bacteriovorus'' has the potential protein secretory capabilities of at least five types of outer membrane secretion systems and four types of inner membrane secretion systems.(5) | ||
Other than encoding for degradative enzymes and transport systems, the chromosome also contains multiple biosynthetic gene clusters that are necessary for the formation of the flagella and pilus. These gene clusters are essential for the motility ''B. bacteriovorus'', which is important to its life cycle because it directly relates to its ability to find and approach the prey cell. However, the organism sheds its flagellum once it makes irreversible contact with its prey cell suggesting that the flagellum is not required for it to grow.(2) | |||
==Cell structure and metabolism== | ==Cell structure and metabolism== | ||
Revision as of 05:27, 29 August 2007
A Microbial Biorealm page on the genus Bdellovibrio bacteriovorus
Classification
Higher order taxa
Bacteria; Proteobacteria; Deltaproteobacteria; Bdellovibrionales; Bdellovibrionaceae; Bdellovibrio
Species
Bdellovibro bacteriovous
Strain
Bdellovibrio bacteriovorus HD100
Description and significance
Bdellovibrios were discovered by Stolp and Petzhold in 1962, in an attempt to isolate bacteriophage from soil samples. Stolp and Petzhold observed unique plaques in their samples that took several days to develop and continued to grow for over a week, instead of plaques caused by bacteriophages that would appear within hours. A closer inspection of the plaques under a light microscope revealed cells that were small, highly motile, and vibrio-shaped. These cells were Bdellovibrios.
After the discovery of Bdellovibrios further observations revealed many interesting and unique properties. One property that makes Bdellovibrios interesting is that it is a parasite to other gram negative bacterias. Bdellovibrios have biphasic life-cycles that include an attack phase, and a free living and mobile phase.(2) The attack phase is when it attaches to another gram negative bacteria and imbeds itself into its periplasm, it then procedes to grow and replicate itself by degrading the host bacterium from the inside out.(1) In the free living and mobile phase, Bdellovibrios move about in search of host or prey bacteria so it can intiate attack phase again.(2) Each of these phases are of interest to researchers because it reveals unique cell-cell interactions and unusual cell metabolism.(1)
Bdellovibrio bacteriovorus is a small, curved, and highly motile gram negative bacteria approximately 0.2 to 0.5μm wide and 0.5 to 2.5μm long.(3) It has been found in many environments that include soil, sewage, and other terrestial and aquatic habitats. B. bacteriovorus has been observed to only attack gram negative bacteria which includes many plant, animal and human pathogens making it an execellent candidate as a biocontrol agent.(2) The study of its degradative enzymes and host targeting system has shed some insight in possible designs for new antimicrobial agents.(3)
Genome structure
The sequencing of the B. bacteriovorus HD100 genome was completed on 01/31/2004. The complete genome consists of a single circular chromosome that is 3,782,950 nucleotides long. The entire genome has a 50% GC content and contains 3629 genes which codes for 3587 proteins and 42 structural RNAs.(4)
Of the large number of proteins that the B. bacteriovorus genome encodes, many of them are degradative and lytic enzymes(2). These enzymes are necessary for B. bacteriovorus to breakdown its host or prey cell. Some of these enzymes needs to be secreted out of B. bacteriovorus and into its prey cell, while degradative products needs to be transported into the B. bacteriovorus from the prey cell cytoplasm. Therefore, the genome of B. bacteriovorus also includes a large amount of transport proteins. In fact, B. bacteriovorus has the potential protein secretory capabilities of at least five types of outer membrane secretion systems and four types of inner membrane secretion systems.(5)
Other than encoding for degradative enzymes and transport systems, the chromosome also contains multiple biosynthetic gene clusters that are necessary for the formation of the flagella and pilus. These gene clusters are essential for the motility B. bacteriovorus, which is important to its life cycle because it directly relates to its ability to find and approach the prey cell. However, the organism sheds its flagellum once it makes irreversible contact with its prey cell suggesting that the flagellum is not required for it to grow.(2)
Cell structure and metabolism
Ecology
Pathology
Application to Biotechnology
Current Research
References
(1)Bdellovibrio Host Dependence: the Search for Signal Molecules and Genes That Regulate the Intraperiplasmic Growth Cycle. By Michael F. Thomashow and Todd W. Cotter
(2)http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&Cmd=Retrieve&list_uids=9637
(3)http://www.ebi.ac.uk/2can/genomes/bacteria/Bdellovibrio_bacteriovorus.html
(4)http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genome&Cmd=ShowDetailView&TermToSearch=384
Edited by student of Rachel Larsen and Hiu Cheng
