Meiothermus: Difference between revisions
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==Genome Structure== | ==Genome Structure== | ||
The entire genome of <i>Meiothermus silvanus</i> DSM 9946 has been sequenced and consist of a 3,249,394 bp long circular chromosome and two plasmids of 347,854 bp and 124,421 bp lengths, respectively. It's 16S rRNA is located on the chromosome at base pairs 7197 to 8677 on the negative strand and is 1481 bp long. Of the 3,720 genes predicted, 3,505 were protein-coding genes and 55 were structural-RNAs. | The entire genome of <i>Meiothermus silvanus</i> DSM 9946 has been sequenced and consist of a 3,249,394 bp long circular chromosome and two plasmids of 347,854 bp and 124,421 bp lengths, respectively. It's 16S rRNA is located on the chromosome at base pairs 7197 to 8677 on the negative strand and is 1481 bp long. Of the 3,720 genes predicted, 3,505 were protein-coding genes and 55 were structural-RNAs. Using the Conserved Domain Database, it was found that conserved domains were present in 2,782 of the 3,505 protein-coding gene sequences. [6] | ||
<i>Meiothermus silvanus</i> DSM 9946 was sequenced at the US Department of Energy Joint Genome Institute on June 4, 2010. [6] | <i>Meiothermus silvanus</i> DSM 9946 was sequenced at the US Department of Energy Joint Genome Institute on June 4, 2010. [6] | ||
Revision as of 05:12, 21 April 2011
Classification
Domain: Bacteria, Phylum: Deinococcus-Thermus, Class: Deinococci, Order: Thermales, Family: Thermaceae
Species
|
NCBI: Taxonomy |
- Meiothermus chiliarophilus
- Meiothermus cerbereus
- Meiothermus granaticius
- Meiothermus rosaceus
- Meiothermus ruber
- Meiothermus rufus
- Meiothermus silvanus
- Meiothermus taiwanensis
- Meiothermus timidus
Description and Significance
Before the recognition of the genus Meiothermus, the species under the genus Thermus were designated as either high or low-temperature species. The proposal of a new genus Meiothermus in 1996 was made to designate the phylogenetic, phenotypic, and chemotaxonomic distinctiveness of the species that have low optimum growth temperatures. Meiothermus indicates an organism living in a "less-hot" place [1]. The cells are 0.5 to 0.8 μm in diameter and cell length is variable - often forming short filaments. The colonies that form vary from red to yellow pigment and are often found in hydrothermal vents.
Meiothermus spp. have the ability to form biofilms and stick to any surface by using specific adhesion organelles [2]. Specifically, M. silvanus and M. ruber have been found to form colored biofilms on machine surfaces and spots in produced paper and board [3] - left unchecked, these biofoulers pose an economic threat to the paper industry [4]. Several techniques have been proposed to minimize biofilm growth on stainless steel and other materials used in the paper industry. One such technique used is the coating of stainless steel with diamond-like carbon or certain fluoropolymers to prevent adhesion and biofilm growth of Meiothermus spp. [2]. Another technique used is the inactivation of microbes by electrochemical oxidation to prevent biofilm formation - this technique inactivates microbes by electrochemically generating chlorine/hypochlorite [5].
Genome Structure
The entire genome of Meiothermus silvanus DSM 9946 has been sequenced and consist of a 3,249,394 bp long circular chromosome and two plasmids of 347,854 bp and 124,421 bp lengths, respectively. It's 16S rRNA is located on the chromosome at base pairs 7197 to 8677 on the negative strand and is 1481 bp long. Of the 3,720 genes predicted, 3,505 were protein-coding genes and 55 were structural-RNAs. Using the Conserved Domain Database, it was found that conserved domains were present in 2,782 of the 3,505 protein-coding gene sequences. [6]
Meiothermus silvanus DSM 9946 was sequenced at the US Department of Energy Joint Genome Institute on June 4, 2010. [6]
Cell Structure, Metabolism and Life Cycle
Meiothermus spp., is a Gram-negative, aerobic microorganism that is variable in length and often forms short filaments. It is primarily an oxygenic chemoorganoheterotroph, but some species grow with nitrate as the terminal electron acceptor. As such, it utilizes such organic substrates such as starch, hexoses, pentoses, disaccharides, amino acids, and organic acids as both a carbon and energy source. The optimum growth conditions varies in a moderate temperature range (50-65°C) and alkaline environments (pH ~8.0).
The ability of thermophilic bacteria much like those from the genus Meiothermus to withstand high temperatures are thought to stem from the possession of special mechanisms for membrane stabilization. Meiothermus spp. most often have a red-orange appearance that stems from the production of carotenoids via the metabolism of tepernoids and polyketides [7]. Carotenoid production may be one of the mechanisms that these bacteria possess, based on the length of carotenoid molecules and its analogue to the fatty acids of the lipid bilayer [8]. In addition, the presence of polar lipids may play a role in this membrane stabilization; these polar lipids are not found in any other known group of bacteria except those of the genera Thermus, Meiothermus, and Deinococcus [9].
Ecology and Pathogenesis
Genetic evidence of these microorganisms have been found throughout the world. The geothermal areas in which Meiothermus spp. have been found include: Rockville, Maryland of the United States; Brawnschweig, Germany [1], Island of S. Miguel, Zores [10], Glysir area of Iceland [10], Yunnan, China [12]; Chandes-Aigues area in Auvergne region of France [13]; and Sao Pedro de Sul, Central Portugal [14]. Microorganisms of the Meiothermus genus often are a dominant component of biofilm matrices in these dynamic environments. Figure 4 illustrates the filamentous crosswise pattern made by Meiothermus that is the dominant genus in biofilm composition [15]. The optimum growth conditions varies slightly from habitat to habitat with moderate temperatures (ranging from 50 to 65°C) and an alkaline environment (pH ~8.0) - no species grows beyond 70°C [1].
References
[6] NCBI genome sequence for Meiothermus genus
[7] Kanehisa Laboratories. "Carotenoid biosynthesis - Meiothermus ruber". 2011.
Author
Page authored by Michael Huarng and Steven Huynh, student of Prof. Jay Lennon at Michigan State University.
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