User:MohamedA: Difference between revisions
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{{Biorealm Genus}} | {{Biorealm Genus}} | ||
[[File:What_it_looks_like.gif|thumb|<i>G. aurantiaca T-27</i> under the microscope [Zhang et al.]]] | |||
==Classification== | ==Classification== | ||
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===Species=== | ===Species=== | ||
Gemmatimonas aurantiaca T-27 | <i>Gemmatimonas aurantiaca T-27</i> | ||
==Description and significance== | ==Description and significance== | ||
<i>G. aurantiaca | <i>G. aurantiaca T27T</i> is an aerobic rod-shaped Gram-negative bacterium that is non-sporulating. It is motile by the use of flagella and it was isolated by anaerobic-aerobic sequential batch reactor under enhanced biological phosphorus removal conditions for wastewater treatment, in simpler terms it is found in sludge. <i>G. aurantiaca T27T</i> is a very slow growing bacterium and is a polyphosphate-accummulating bacteria. Colonies that are formed were circular, smooth, faintly orange to pink, and only 1–2 mm in diameter. Cells reproduce by binary fission and often show budding morphology. | ||
==Genome structure== | ==Genome structure== | ||
<i>Gemmatimonas aurantiaca T-27T</i> has a circular chromosome that consists of 4,636,964 base pairs of which majority, 64.28%, includes G/C pair. <i>G. aurantiaca</i> contains about 3,935 open reading frames, 48 tRNA genes and single rRNA operon were predicted. It also contains essential genes that were previously identified in model organisms such as <i>Escherichia coli</i> and <i>Bacillus subtilis</i>. This shows that their basic cellular system is not much different from other known microbes. <i>G. aurantiaca T-27T</i> can grow both under aerobic and anaerobic conditions. Furthermore, <i>G. auratiaca T-27T</i> genome encoded significantly large numbers of signal transduction components, sigma factors and transporters. These genomic features would provide an insight into the life style of <i>G. aurantiaca</i>, and facilitate isolation of not-yet-cultivated Gemmatimonadetes species.<br> | |||
[[File:Genome_gemmatimonas.png|thumb|Genome structure of <i>G. aurantiaca</i> [Genome Information Broker]]] | |||
==Cell structure and metabolism== | ==Cell structure and metabolism== | ||
<i>Gemmatimonas aurantiaca T-27T</i> possess a Gram-negative cell envelope, with the cytoplasmic and outer membranes readily visible. It is able to utilize substrates as sole carbon sources for energy. Some substrates are yeast extract, polypepton, acetate, and gelatin. When growth occurs catalase and oxidase are produced, while polyphosphate accumulation is present. | |||
==Ecology== | ==Ecology== | ||
<i>Gemmatimonas aurantiaca T-27T</i> is a very slow growing bacterium that needs specific factors to allow growth. Strain T-27T grows at 25–35 °C. No growth occurs at temperatures of below 20°C or above 37°C, while the optimum pH needed for growth is about 7. | |||
==Pathology== | ==Pathology== | ||
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==References== | ==References== | ||
[http://gib.genes.nig.ac.jp/single/main.php?spid=Gaur_T27 <i>Gemmatimonas aurantiaca T-27</i>." Genome Information Broker. Web.]<br> | |||
[http://ijs.sgmjournals.org/content/53/4/1155.full Zhang, Hui, Yuji Sekiguchi, Satoshi Hanada, Philip Hugenholtz, Hongik Kim, Yoichi Kamagata, and Kazunori Nakamura. "<i>Gemmatimonas Aurantiaca Gen. Nov.</i>, Sp. Nov., a Gram-negative, Aerobic, Polyphosphate-accumulating Micro-organism, the First Cultured Representative of the New Bacterial Phylum Gemmatimonadetes Phyl. Nov." International Journal of Systematic and Evolutionary Microbiology.] | |||
Edited by student of Iris Keren: | Edited by student of Iris Keren: | ||
NEUS2012 Amal Mohamed, Soonji Kim, Jaclyn Egitto | NEUS2012 Amal Mohamed, Soonji Kim, Jaclyn Egitto | ||
Revision as of 23:11, 16 February 2012
A Microbial Biorealm page on the genus MohamedA
Classification
Higher order taxa
Bacteria; Gemmatimonadetes; Gemmatimonadales; Gemmatimonadaceae; Gemmatimonas.
Species
Gemmatimonas aurantiaca T-27
Description and significance
G. aurantiaca T27T is an aerobic rod-shaped Gram-negative bacterium that is non-sporulating. It is motile by the use of flagella and it was isolated by anaerobic-aerobic sequential batch reactor under enhanced biological phosphorus removal conditions for wastewater treatment, in simpler terms it is found in sludge. G. aurantiaca T27T is a very slow growing bacterium and is a polyphosphate-accummulating bacteria. Colonies that are formed were circular, smooth, faintly orange to pink, and only 1–2 mm in diameter. Cells reproduce by binary fission and often show budding morphology.
Genome structure
Gemmatimonas aurantiaca T-27T has a circular chromosome that consists of 4,636,964 base pairs of which majority, 64.28%, includes G/C pair. G. aurantiaca contains about 3,935 open reading frames, 48 tRNA genes and single rRNA operon were predicted. It also contains essential genes that were previously identified in model organisms such as Escherichia coli and Bacillus subtilis. This shows that their basic cellular system is not much different from other known microbes. G. aurantiaca T-27T can grow both under aerobic and anaerobic conditions. Furthermore, G. auratiaca T-27T genome encoded significantly large numbers of signal transduction components, sigma factors and transporters. These genomic features would provide an insight into the life style of G. aurantiaca, and facilitate isolation of not-yet-cultivated Gemmatimonadetes species.
Cell structure and metabolism
Gemmatimonas aurantiaca T-27T possess a Gram-negative cell envelope, with the cytoplasmic and outer membranes readily visible. It is able to utilize substrates as sole carbon sources for energy. Some substrates are yeast extract, polypepton, acetate, and gelatin. When growth occurs catalase and oxidase are produced, while polyphosphate accumulation is present.
Ecology
Gemmatimonas aurantiaca T-27T is a very slow growing bacterium that needs specific factors to allow growth. Strain T-27T grows at 25–35 °C. No growth occurs at temperatures of below 20°C or above 37°C, while the optimum pH needed for growth is about 7.
Pathology
How does this organism cause disease? Human, animal, plant hosts? Virulence factors, as well as patient symptoms.
Current Research
Enter summaries of the most recent research here--at least three required
Cool Factor
Describe something you fing "cool" about this microbe.
References
Gemmatimonas aurantiaca T-27." Genome Information Broker. Web.
Zhang, Hui, Yuji Sekiguchi, Satoshi Hanada, Philip Hugenholtz, Hongik Kim, Yoichi Kamagata, and Kazunori Nakamura. "Gemmatimonas Aurantiaca Gen. Nov., Sp. Nov., a Gram-negative, Aerobic, Polyphosphate-accumulating Micro-organism, the First Cultured Representative of the New Bacterial Phylum Gemmatimonadetes Phyl. Nov." International Journal of Systematic and Evolutionary Microbiology.
Edited by student of Iris Keren: NEUS2012 Amal Mohamed, Soonji Kim, Jaclyn Egitto
