Tectiviridae
Classification
Viruses; Varidnaviria; Bamfordvirae; Preplasmiviricota; Tectiliviricetes; Kalamavirales; Tectiviridae; Alphatectivirus; Alphatectivirus PRD1
Species
NCBI: [1]
Enterobacteria phage PRD1
Description and Significance
Alphatectivirus PRD1 is a bacteriophage known for its unique structural features. PRD1 has an icosahedral capsid, measuring about 66 nanometers in diameter, and unlike many bacteriophages, it possesses an internal lipid membrane situated beneath its protein shell. This rare characteristic among icosahedral viruses contributes to PRD1’s stability in diverse environments, including extreme pH and temperature conditions. Its linear double-stranded DNA genome, spanning approximately 15,000 base pairs, encodes multiple structural proteins that are crucial for the assembly and function of both the capsid and the internal membrane.
PRD1's primary habitat involves environments where Gram-negative bacteria, such as Escherichia coli and Salmonella, thrive, which includes various soil and water ecosystems, as well as potential niches in the intestines of animals. This phage’s resilience across environmental conditions highlights its potential as a candidate for studies in bacteriophage therapy, particularly against antibiotic-resistant bacterial strains. PRD1’s bacteriophage characteristics allow it to target specific bacteria, raising the possibility of developing bacteriophage-based treatments that could serve as an alternative to conventional antibiotics.
In addition to its relevance in combating bacterial infections, PRD1 has proven valuable in studies of DNA replication, protein synthesis, and virus-host interactions. Its relatively simple genome and replication mechanisms make it an ideal model for understanding virus assembly and gene regulation. Furthermore, PRD1’s unique lipid-containing capsid has inspired advancements in nanotechnology and drug delivery research, where scientists aim to mimic its stability and efficiency in viral assembly for use in biotechnological applications.
Genome Structure
Describe the size and content of the genome. How many chromosomes? Circular or linear? Other interesting features? What is known about its sequence?
Single molecule of linear dsDNA that is 14927 bp, its entire sequence is known. The 5' ends of the DNA have covalently linked proteins. It also has inverted terminal repeats at both ends of the DNA sequence which serve as origins of replication. There are 31 genes in the genome but only 26 of them have a known protein product, the other 5 have listed under product "hypothetical protein". It also has 5 operons and 6 promoters, the extra promoter is due to the fact that it can be replicated from both ends of the DNA sequence due to the inverted terminal repeats.
Cell Structure, Metabolism and Life Cycle
Interesting features of cell structure; how it gains energy; what important molecules it produces.
Viruses like Alphatectivirus PRD1 do not have their own metabolism and are non-living entities that are unable to generate ATP and translate it to form proteins. Instead, Alphatectivirus PRD1 relies on the metabolism of host cells to provide energy and metabolic substances for their life cycles. It is icosahedral in shape, has no external envelope but does have a capsid along with spike proteins. It also has an inner membrane vesicle enclosed by the capsid that is made up of virus encoded proteins and lipids from the host cells plasma membrane.
Ecology and Pathogenesis
Habitat; symbiosis; biogeochemical significance; contributions to environment.
If relevant, how does this organism cause disease? Human, animal, plant hosts? Virulence factors, as well as patient symptoms.
Alphatectivirus PRD1 bacteriophage plays a unique role in ecology through its interactions with bacterial hosts. PRD1 is found in habitats rich in Gram-negative bacteria such as Escherichia coli and Salmonella, which include aquatic ecosystems, soil, and animal gastrointestinal tracts. By infecting and lysing bacteria, PRD1 helps regulate bacterial populations by promoting microbial diversity and balance within the ecosystem (Harvey, 2004). Although its relationship with bacteria is parasitic, PRD1 can facilitate horizontal gene transfer, sometimes transferring genes that aid bacterial adaptation to specific conditions. While not a traditional symbiotic relationship, this genetic exchange can enhance bacterial survival and resilience, indirectly benefiting the surrounding ecosystem
References
https://www.sciencedirect.com/topics/immunology-and-microbiology/enterobacteria-phage-prd1#:~:text=The%20capsid%20of%20Enterobacteria%20phage,are%20used%20for%20receptor%20recognition. https://blog.addgene.org/viral-vectors-101-inverted-terminal-repeats https://www.sciencedirect.com/science/article/pii/B9780128145159000448 https://www.sciencedirect.com/science/article/pii/S0923250824000330 https://www.uniprot.org/uniprotkb/P09009/entry https://www.mdpi.com/1999-4915/11/12/1134 https://pubmed.ncbi.nlm.nih.gov/11577098 https://pmc.ncbi.nlm.nih.gov/articles/PMC11211187/ https://academic.oup.com/bioscience/article/49/10/781/222807?searchresult=1 https://viralzone.expasy.org/160?outline=all_by_species
Author
Page authored by Lee Hinson, Abi Miller, Mariella Dagdag, & Alexis Grimes, students of Prof. Bradley Tolar at UNC Wilmington.
