Carnimonas nigrificans: Difference between revisions

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Title: Carnimonas nigrificans  
Title: Carnimonas nigrificans  
Bacteria commonly known for black spots on cured meats
Bacteria commonly known for black spots on cured meats
Microbe image:
Classification:
Species:
Description & Significance
Genome structure
Cell structure, metabolism, life cycle
ecology & pathogenesis
references




{{Uncurated}}
{{Uncurated}}
[[Image:Filename.jpg|thumb|300px|right|Legend. Image credit: Name or Publication.]]
[[Image:ijs-48-3-677-f1.gif|thumb|300px|right|Legend. Image credit: https://www.microbiologyresearch.org/content/journal/ijsem/10.1099/00207713-48-3-677?crawler=true.]]


==Classification==
==Classification==


Domain; Phylum; Class; Order; family [Others may be used.  Use [http://www.ncbi.nlm.nih.gov/Taxonomy/ NCBI] link to find]
Domain; Bacteria Phylum; Pseudomonadota Class; Gammaproteobacteria Order; Oceanospirillales family; Halomonadaceae Genus: Carnimonas species; nigrificans


===Species===
===Species===
{|
<I>Carnimonas nigrificans</i>.
| height="10" bgcolor="#FFDF95" |
'''NCBI: [https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=1007084&lvl=3&lin=f&keep=1&srchmode=1&unlock]'''
|}
 
''Trueperella pyogenes''


==Description and Significance==
==Description and Significance==
Describe the appearance, habitat, etc. of the organism, and why you think it is important.
<I>C. nigrificans</I> gets to a size of approximately. Optimal growth temperature is between 28-30 degrees C. <I>C. nigrificans</I> can grow in up to 8% sodium chloride. <I>C. nigrificans</I> usually grows to 0.5µm-0.6µm width, and up to 7µm length. <I>C. nigrificans</I> most commonly is seen growing on cured meat products. <I>C. nigrificans</I> is a non-spore forming bacteria.


==Genome Structure==
==Genome Structure==
Describe the size and content of the genome.  How many chromosomes?  Circular or linear?  Other interesting features?  What is known about its sequence?
Carnimonas nigrificans has 2,390 total genes and 225 genetic pathways. C. nigrificans has 1,180 enzymatic reactions and 77 transport reactions. C. nigrificans has 2,312 polypeptide genes, 39 protein complexes, 798 enzymes, 277 transporters, 895 compounds, 1,744 transcriptional units, 50 tRNAs, and 4 GO terms. C. nigrificans has circular chromosomes.
Carnimonas nigrificans has 2,390 total genes and 225 genetic pathways. C. nigrificans has 1,180 enzymatic reactions and 77 transport reactions. C. nigrificans has 2,312 polypeptide genes, 39 protein complexes, 798 enzymes, 277 transporters, 895 compounds, 1,744 transcriptional units, 50 tRNAs, and 4 GO terms. C. nigrificans has circular chromosomes.


==Cell Structure, Metabolism and Life Cycle==
==Cell Structure, Metabolism and Life Cycle==
Interesting features of cell structure; how it gains energy; what important molecules it produces.
Carnimonas nigrificans is a Gram-negative and catalase-positive and oxidase positive bacteria. C. nigrificans is an obligate aerobic organism, and is rod shaped.
 
The G+C content of DNA of strain CTCBS1T of <I>C. nigrificans</i>is 56.0 +/- 0.3 mol%. <I>C. nigrificans</I> relies on glucose for energy, and does not produce gas from metabolization of glucose. <I>C. nigrificans</I> strains produce acid from glucose, xylose, melibiose, maltose and saccharose sugars.
Carnimonas nigrificans is a Gram-negative and catalase-positive bacteria. C. nigrificans is an obligate aerobic organism, and is rod shaped.


==Ecology and Pathogenesis==
==Ecology and Pathogenesis==
Habitat; symbiosis; biogeochemical significance; contributions to environment.<br>
<I>C. nigrificans</I> toxicological studies have shown no known pathogenicity towards humans.<I>C. nigrificans</I> grows on cured meat products. The polar lipid composition of <I>C. nigrificans</I> is diphosphatidyl-glycerine, phosphatidylglycerine and phosphatidyl-ethanolamin, along with several other unidentified compounds.
If relevant, how does this organism cause disease? Human, animal, plant hosts? Virulence factors, as well as patient symptoms.<br><br>


==References==
==References==
[Sample reference] [http://ijs.sgmjournals.org/cgi/reprint/50/2/489 Takai, K., Sugai, A., Itoh, T., and Horikoshi, K. "''Palaeococcus ferrophilus'' gen. nov., sp. nov., a barophilic, hyperthermophilic archaeon from a deep-sea hydrothermal vent chimney". ''International Journal of Systematic and Evolutionary Microbiology''. 2000. Volume 50. p. 489-500.]
Garriga M, Ehrmann MA, Arnau J, Hugas M, Vogel RF. Carnimonas nigrificans gen. nov., sp. nov., a bacterial causative agent for black spot formation on cured meat products. Int J Syst Bacteriol. 1998 Jul;48 Pt 3:677-86. doi: 10.1099/00207713-48-3-677. PMID: 9734022.
 
Subhraveti, P., Keseler, I., Kothari, A., Caspi, R., &amp; Karp, P. D. (n.d.). Summary of Carnimonas nigrificans ATCC BAA-78, version 27.1 Tier 3 Uncurated Database. Summary of carnimonas nigrificans ATCC BAA-78, version 27.1. https://biocyc.org/organism-summary?object=GCF_000526695&amp;sid=biocyc13-3908806087]
 
[Garriga, M., Ehrmann, M. A., Arnau, J., Hugas, M., &amp; Vogel, R. F. (1998, July 1). Carnimonas nigrificans gen. Nov., sp. nov., a bacterial causative agent for black spot formation on cured meat products. microbiologyresearch.org. https://www.microbiologyresearch.org/content/journal/ijsem/10.1099/00207713-48-3-677?crawler=true


Garriga M, Ehrmann MA, Arnau J, Hugas M, Vogel RF. Carnimonas nigrificans gen. nov., sp. nov., a bacterial causative agent for black spot formation on cured meat products. Int J Syst Bacteriol. 1998 Jul;48 Pt 3:677-86. doi: 10.1099/00207713-48-3-677. PMID: 9734022.
[http://www.ncbi.nlm.nih.gov/Taxonomy/]


Subhraveti, P., Keseler, I., Kothari, A., Caspi, R., &amp; Karp, P. D. (n.d.). Summary of Carnimonas nigrificans ATCC BAA-78, version 27.1 Tier 3 Uncurated Database. Summary of carnimonas nigrificans ATCC BAA-78, version 27.1. https://biocyc.org/organism-summary?object=GCF_000526695&amp;sid=biocyc13-3908806087
Garriga, M & Ehrmann, Matthias & Arnau, Jacint & Hugas, Marta & Vogel, R. (1998). Carnimonas nigrificans gen. nov., sp. nov., a bacterial causative agent for black spot formation on cured meat products. International journal of systematic bacteriology. 48 Pt 3. 677-86. 10.1099/00207713-48-3-677.


==Author==
==Author==
Page authored by Elan Doyle, student of Prof. Bradley Tolar at UNC Wilmington.
 
Page authored by AJ Schwarz, student of Prof. Bradley Tolar at UNC Wilmington.
 
 
<!-- Do not remove this line-->[[Category:Pages edited by students of Bradley Tolar at UNC Wilmington]]

Latest revision as of 02:41, 12 December 2023

Title: Carnimonas nigrificans Bacteria commonly known for black spots on cured meats


This student page has not been curated.

Classification

Domain; Bacteria Phylum; Pseudomonadota Class; Gammaproteobacteria Order; Oceanospirillales family; Halomonadaceae Genus: Carnimonas species; nigrificans

Species

Carnimonas nigrificans.

Description and Significance

C. nigrificans gets to a size of approximately. Optimal growth temperature is between 28-30 degrees C. C. nigrificans can grow in up to 8% sodium chloride. C. nigrificans usually grows to 0.5µm-0.6µm width, and up to 7µm length. C. nigrificans most commonly is seen growing on cured meat products. C. nigrificans is a non-spore forming bacteria.

Genome Structure

Carnimonas nigrificans has 2,390 total genes and 225 genetic pathways. C. nigrificans has 1,180 enzymatic reactions and 77 transport reactions. C. nigrificans has 2,312 polypeptide genes, 39 protein complexes, 798 enzymes, 277 transporters, 895 compounds, 1,744 transcriptional units, 50 tRNAs, and 4 GO terms. C. nigrificans has circular chromosomes.

Cell Structure, Metabolism and Life Cycle

Carnimonas nigrificans is a Gram-negative and catalase-positive and oxidase positive bacteria. C. nigrificans is an obligate aerobic organism, and is rod shaped. The G+C content of DNA of strain CTCBS1T of C. nigrificansis 56.0 +/- 0.3 mol%. C. nigrificans relies on glucose for energy, and does not produce gas from metabolization of glucose. C. nigrificans strains produce acid from glucose, xylose, melibiose, maltose and saccharose sugars.

Ecology and Pathogenesis

C. nigrificans toxicological studies have shown no known pathogenicity towards humans.C. nigrificans grows on cured meat products. The polar lipid composition of C. nigrificans is diphosphatidyl-glycerine, phosphatidylglycerine and phosphatidyl-ethanolamin, along with several other unidentified compounds.

References

Garriga M, Ehrmann MA, Arnau J, Hugas M, Vogel RF. Carnimonas nigrificans gen. nov., sp. nov., a bacterial causative agent for black spot formation on cured meat products. Int J Syst Bacteriol. 1998 Jul;48 Pt 3:677-86. doi: 10.1099/00207713-48-3-677. PMID: 9734022.

Subhraveti, P., Keseler, I., Kothari, A., Caspi, R., & Karp, P. D. (n.d.). Summary of Carnimonas nigrificans ATCC BAA-78, version 27.1 Tier 3 Uncurated Database. Summary of carnimonas nigrificans ATCC BAA-78, version 27.1. https://biocyc.org/organism-summary?object=GCF_000526695&sid=biocyc13-3908806087]

[Garriga, M., Ehrmann, M. A., Arnau, J., Hugas, M., & Vogel, R. F. (1998, July 1). Carnimonas nigrificans gen. Nov., sp. nov., a bacterial causative agent for black spot formation on cured meat products. microbiologyresearch.org. https://www.microbiologyresearch.org/content/journal/ijsem/10.1099/00207713-48-3-677?crawler=true

[1]

Garriga, M & Ehrmann, Matthias & Arnau, Jacint & Hugas, Marta & Vogel, R. (1998). Carnimonas nigrificans gen. nov., sp. nov., a bacterial causative agent for black spot formation on cured meat products. International journal of systematic bacteriology. 48 Pt 3. 677-86. 10.1099/00207713-48-3-677.

Author

Page authored by AJ Schwarz, student of Prof. Bradley Tolar at UNC Wilmington.