Enterococcus Avium: Difference between revisions

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===Higher order taxa===
===Higher order taxa===
[[Image:Presentation1-copy.jpg‎|frame|right|150px|Picture of  <i>tractuosa</i>][[http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3111994/]]]]


<p>Domain: Bacteria</p>
<p>Domain: Bacteria</p>
Line 14: Line 13:


===Species===
===Species===
''Marivirga tractuosa '' Type strain: H-43
''E. avium ''


==Description and significance==
==Description and significance==


Marivirga <i>tractuosa</i> a rod-shaped,[http://en.wikipedia.org/wiki/Gram-negative gram-negative], pigmented, non-spore forming bacterium. It is a [http://en.wikipedia.org/wiki/Mesophile mesophile] with optimum growth temperatures from 28-32ºC. It is important because it is resistant to some antibiotics and it has an interesting motility. This microbe has a gliding motility, meaning that it moves by itself without the help of flagella or any external forces. The antibiotics it is resistant to include: gentamicin, kanamycin, neomycin, polymixin and streptomycin.
<i>Enterococcus avium</i> is a rare infection in humans, but only a few reported cases are known. In such cases, <i>E. avium</i> may be vancomycin-resistant <I>Enterococcus avium</I>, and is referred to as VREA.VREA cases have been successfully treated with linezolid. <i>E. avium</i> is a [http://en.wikipedia.org/wiki/ Gram positive], non-pigmented, non-spore forming bacterium,usually in the shape of a sphere or oval, circular, and smooth colonies.(4,6,7-13)


==Genome structure==
==Genome structure==
Marivirga <i>tractousa</i> chromosome is 4,511,574 base pairs long, and the chromosomes are circular. They have a 4916 sequence length, and they have 4516490 nucleotides. It has 3757 protein genes and 49 RNA genes. Its DNA coding region is at 4,029,412 base pair, and its DNA G+C content is 1,604,111 base pairs. Its total number of genes is 3,857. It has 2 rRNA operons, and 51 Psuedo genes.
<i>Enterococcus avium</i> contains one circular chromosome about 3445 kb in size. The sequence of 16S rRNA gene is most closely related to <i>E. durans</i>, with both containing six rxn operons. The whole genome has not been sequenced yet.  The VREA case receives its resistance to vancomycin due to a gene called the vanA gene. There are genes that scientists have isolated from many species of <i>Enterococci</i> (agg, gelE, ace, cylLLS, esp, cpd, fsrB) that are considered virulence factors. Analysis of the genome for <i>E. avium</i> indicates 35-40% G+C content of the DNA.(5,4,6,7-13)


==Cell and colony structure==
==Cell and colony structure==
Marivirga <i>tractuosa</i> are long, slender, flexible rods 10-50 µm in length, 0.4-0.5 µm in width Colonies are circular, shiny and 2-4 mm in diameter after 72 hours of incubation on marine agar (which is a gelling agent from seaweed). They are usually dark-orange in color but whitish or yellow-pigmented are also sometimes present.
Enterococcus <i>avium</i> is a gram positive bacterium, roughly 0.6-2.0 µm in size. It usually takes place in pairs or chains. The cells are spherically and ovoid shaped, and grow in numerous colonies consisting of thousands if not hundreds of thousands bacterium. When grown on a nutrient agar the colonies are smooth, circular and have no pigment.  <i>E. avium</i> are non-motile bacterium . One case of VREA a women had 100,000+/mm of <i>E. avium</i> in her urine sample.(5,4,6,7-13)


==Metabolism==
==Metabolism==
It is a strictly aerobic [http://en.wikipedia.org/wiki/Chemoorganotroph chemoorganotroph], meaning it uses organic compounds as its energy and carbon source. Carbon sources come from glycerol, glucose, galactose, and sucrose. Growth is observed at 10-40ºC and with 0.5–10% NaCl, with optimal growth at 28-32ºC and 4-7% NaCl.
<i>E. ovum</i> is a facultative anaerobe, meaning it can make ATP when oxygen is present, but can also switch and ferment. The bacterium is a [http://en.wikipedia.org/wiki/Chemoorganotroph chemoorganotroph] , that ferments many carbohydrates with a main production of L(+) lactic acid. The bacterium tests negative to catalase. The optimal temperature for growth is 37ºC, but can also grow at 10º and 45ºC. The best growth pH is 9.6 and were identified by way of growth in 6.5% NaCl broth and hydrolysis of esculin on bile-esculin agar. Folinic acid is required for growth. Arginine and starch are not hydrolyzed. <i>E. avium</i> produces H2S, and nitrate is not reduced. <i>E. avium</i> can survive heating at 60ºC, and is very well known for its production of α-galactosidase. <i>E. avium</i> is said to be a nosocomial pathogen, meaning that it prefers a hospital like environment. Most cases are known to start outside of a hospital, but increase in colony size when hospitalized.(5,4,14)


==Ecology==
==Ecology==
Marvirga <i>tractuosa</i> lives in a habitat that are mostly wet terrestrial habitats. They are also occasionally found in fresh water. Originally found on the beach sand from Nha Trang, Veitnam. Other strains have also been found in a variety of places: mud in the Orne Estuary, France and silty sand in Penang, Malaysia, as well as from brown mud from Muigh Inis, Ireland, underneath frozen sand in the upper littoral zone at Auke Bay, Alaska, red-brown mud from Helgoland Island, Germany, and from brown sand at Moreton Bay, Australia.
The habitat of this pathogen has been noted to be multiple possibilities, but some of the common places it colonizes are, the gastrointestinal tract, urinary tract, digestive, and in general the abdominal region. It’s optimal growth occurs at 37ºC and go as low as 10ºC and as high as 60ºC. The optimal growth pH is 9.6, but usually is characterized between 4 and 5. In two cases of <i>E. avium</i> being studied both patients were complaining of abdominal pain, and later discovered that the specific type of <i>Enterococcus</i> was (VREA), which is Vancomycin  Resistant <i>E. avium</i>. Vacomycin is a type of drug that is used to treat colitis, which is inflammation of the intestine, due to bacteria. VREA receives its resistance to Vancomycin due to the presence of the vanA gene. Since this is most commonly found in the gastro intestinal and urinary tracts, the pathogen needs a warmer environment. It can also survive harsh conditions such as enzymes, acids and other intestinal and urinary fluids.(3,4,5)


==Pathology==
==Pathology==
It is not reported to be pathogenic.
<i>E. ovum</i>  is said to be a nosocomial pathogen, meaning that it prefers a hospital like environment and when found in the human body it causes many infections of the abdominal/ urinary region.(4)


==References==
==References==
[[http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3111994/]Pagani, I.; Chertkov, O., Lapidus, A., Lucas, S., Glavina Del Rio, T., Tice, H., Copeland, A., Cheng, J., Nolan, M., Saunders, E., Pitluck, S., Held, B., Goodwin, L., Liolios, K., Ovchinnikova, G., Ivanova, N., Mavromatis, K., Pati, A., Chen, A., Palaniappan, K., Land, M., Hauser, L., Jeffries, C., Detter, J., Han, C., Tapia, R., Ngatchou, O., Rohde, M., Göker, M., Spring, S., Sikorski, J., Woyke, T., Bristow, J., Eisen, J., Markowitz, V., Hugenholtz, P., Klenk, H., & Kyrpides, N. (2011). Complete genome sequence of Marivirga tractuosa type strain (H-43T). Standards In Genomic Sciences, 4(2). doi:10.4056/sigs.1623941]
[[http://journals.lww.com/amjmedsci/pages/articleviewer.aspx?year=2005&issue=03000&article=00011&type=abstract]Mohanty S, Dhawan B, Kapil A, Das BK, Pandey P, Gupta A (March 2005). "Brain abscess due to Enterococcus avium". Am. J. Med. Sci. 329 (3): 161–2. doi:10.1097/00000441-200503000-00011.  


[[http://www.ncbi.nlm.nih.gov/pubmed/21789597]Yoon, Jaewoo, Naoya Oku, Sanghwa Park, Atsuko Katsuta, and Hiroaki Kasai. (2011) "Tunicatimonas Pelagia Gen. Nov., Sp. Nov., a Novel Representative of the Family Flammeovirgaceae Isolated from a Sea Anemone by the Differential Growth Screening Method." Antonie Van Leeuwenhoek 101.1: 133+, doi: 10.1007/s10482-011-9626-6]
[[http://terms.steadyhealth.com/Enterococcus_avium]Enterococcus avium at steadyhealth.comJuly 18, 2010.


[[http://www.ncbi.nlm.nih.gov/pubmed/19767357]Nedashkovskaya, O. I., M. Vancanneyt, S. B. Kim, and K. S. Bae. "Reclassification of Flexibacter Tractuosus (Lewin 1969) Leadbetter 1974 and 'Microscilla Sericea' Lewin 1969 in the Genus Marivirga Gen. Nov. as Marivirga Tractuosa Comb. Nov. and Marivirga Sericea Nom. Rev., Comb. Nov." International Journal Of Systematic And Evolutionary Microbiology 60.8 (2010): 1858-863. doi: 10.1099/ijs.0.016121-0]
[[http://journals.lww.com/infectdis/Fulltext/2004/07000/Vancomycin_Resistant_Enterococcus_avium.6.aspx]Lee, Prescott P. MD; Donald A. Ferguson, Jr.; John J. Laffan. Vancomycin Resistant Enterococcus avium. Infectious Diseases in Clinical Practice: July 2004 12:4, pp. 239-244.


[[http://books.google.com/books?id=0-VqgLiCPFcC&pg=PA595&lpg=PA595&dq=enterococcus+avium+genome&source=bl&ots=kFzduUFt3z&sig=RwByipeE8DFu94rjJy9SK1Ot8-Y&hl=en&sa=X&ei=Wu-hT8P3H6q_6AGCrLTACA&sqi=2&ved=0CDMQ6AEwAg#v=onepage&q=enterococcus%20avium%20genome&f=false] pp. 595, 2009, 1984-1989. Bergey, H., David, Boone, R., David, Manual of Systematic Bacteriology, Volume 3.
[[http://ijs.sgmjournals.org/content/34/2/220.full.pdf]M. D. COLLINS, D. JONES, J. A. E. FARROW, R. KILPPER-BALZ, AND K. H. SCHLEIFER,International Journal of Systematic Bacteriology. Apr, 1984, pp. 220-223 DOI#:0020-7713/84/020220-04
7. Collins, M. D., and D. Jones. 1979. The distribution of isoprenoid
quinones in streptococci of serological groups D and N. J.
Gen. Microbiol. 114:27-33.
8. Deibel, R. H., and H. W. Seeley. 1974. Streptococcaceae p.
490-509. In R. E. Buchanan and N. E. Gibbons (ed.), Bergey’s
manual of determinative bacteriology, 8th ed. The Williams &
Wilkins Co., Baltimore.
9. Farrow, J. A. E., D. Jones, B. A. Phillips, and M. D. Collins.
1983. Taxodomic studies on some group D streptococci. J. Gen.
Microbiol. 129:1423-1432.
10. Jones, D., M. J. Sackin, and P. H. A. Sneath. 1972. A numerical
taxonomic study of streptococci of serological group D. J. Gen.
Microbiol. 72:439-450.
11. Nowlan, S. S., and R. H. Deibel. 1967. Group Q streptococci. I.
Ecology, serology, physiology, and relationship to established
enterococci. J. Bac teriol. 94:291-296.
12. Schleifer, K. H., and 0. Kandler. 1972. Peptidoglycan types of
bacterial cell walls and their taxonomic implications. Bacteriol.
Rev. 36:407-477.
13. Schleifer, K. H., and R. Kilpper-Bdz. Transfer of Streptococcus
faecalis and Streptococcus faecium to the genus Enterococcus
nom. rev. as Enterococcus faecalis comb.nov. and Enterococcus
faecium comb.nov. Int. J. Syst. Bacteriol. 34:31-34.
14. Hensyl,R., William. Forlifer, E., Linda, Wrzosek , Lorraine, Rosenberger, E., Wilma, Felton, J., Barbara., 2000 Bergey’s Manual of Determinative bacteriology. Lippincott Williams & Wilkins. Pp 527-536.




Edited by Edited by Kayla Ferrara a student of Dr. Lisa R. Moore, University of Southern Maine, Department of Biological Sciences, [http://www.usm.maine.edu/bio]
Edited by Edited by Kayla Ferrara a student of Dr. Lisa R. Moore, University of Southern Maine, Department of Biological Sciences, [http://www.usm.maine.edu/bio]

Latest revision as of 02:46, 8 May 2012

This student page has not been curated.

A Microbial Biorealm page on the genus Enterococcus Avium

Classification

Higher order taxa

Domain: Bacteria

Phylum: Firmicutes

Class: Bacilli

Order: Lactobacillales

Family: Enterococcaceae

Genus: Enterococcus

Species

E. avium

Description and significance

Enterococcus avium is a rare infection in humans, but only a few reported cases are known. In such cases, E. avium may be vancomycin-resistant Enterococcus avium, and is referred to as VREA.VREA cases have been successfully treated with linezolid. E. avium is a Gram positive, non-pigmented, non-spore forming bacterium,usually in the shape of a sphere or oval, circular, and smooth colonies.(4,6,7-13)

Genome structure

Enterococcus avium contains one circular chromosome about 3445 kb in size. The sequence of 16S rRNA gene is most closely related to E. durans, with both containing six rxn operons. The whole genome has not been sequenced yet. The VREA case receives its resistance to vancomycin due to a gene called the vanA gene. There are genes that scientists have isolated from many species of Enterococci (agg, gelE, ace, cylLLS, esp, cpd, fsrB) that are considered virulence factors. Analysis of the genome for E. avium indicates 35-40% G+C content of the DNA.(5,4,6,7-13)

Cell and colony structure

Enterococcus avium is a gram positive bacterium, roughly 0.6-2.0 µm in size. It usually takes place in pairs or chains. The cells are spherically and ovoid shaped, and grow in numerous colonies consisting of thousands if not hundreds of thousands bacterium. When grown on a nutrient agar the colonies are smooth, circular and have no pigment. E. avium are non-motile bacterium . One case of VREA a women had 100,000+/mm of E. avium in her urine sample.(5,4,6,7-13)

Metabolism

E. ovum is a facultative anaerobe, meaning it can make ATP when oxygen is present, but can also switch and ferment. The bacterium is a chemoorganotroph , that ferments many carbohydrates with a main production of L(+) lactic acid. The bacterium tests negative to catalase. The optimal temperature for growth is 37ºC, but can also grow at 10º and 45ºC. The best growth pH is 9.6 and were identified by way of growth in 6.5% NaCl broth and hydrolysis of esculin on bile-esculin agar. Folinic acid is required for growth. Arginine and starch are not hydrolyzed. E. avium produces H2S, and nitrate is not reduced. E. avium can survive heating at 60ºC, and is very well known for its production of α-galactosidase. E. avium is said to be a nosocomial pathogen, meaning that it prefers a hospital like environment. Most cases are known to start outside of a hospital, but increase in colony size when hospitalized.(5,4,14)

Ecology

The habitat of this pathogen has been noted to be multiple possibilities, but some of the common places it colonizes are, the gastrointestinal tract, urinary tract, digestive, and in general the abdominal region. It’s optimal growth occurs at 37ºC and go as low as 10ºC and as high as 60ºC. The optimal growth pH is 9.6, but usually is characterized between 4 and 5. In two cases of E. avium being studied both patients were complaining of abdominal pain, and later discovered that the specific type of Enterococcus was (VREA), which is Vancomycin Resistant E. avium. Vacomycin is a type of drug that is used to treat colitis, which is inflammation of the intestine, due to bacteria. VREA receives its resistance to Vancomycin due to the presence of the vanA gene. Since this is most commonly found in the gastro intestinal and urinary tracts, the pathogen needs a warmer environment. It can also survive harsh conditions such as enzymes, acids and other intestinal and urinary fluids.(3,4,5)

Pathology

E. ovum is said to be a nosocomial pathogen, meaning that it prefers a hospital like environment and when found in the human body it causes many infections of the abdominal/ urinary region.(4)

References

[[1]Mohanty S, Dhawan B, Kapil A, Das BK, Pandey P, Gupta A (March 2005). "Brain abscess due to Enterococcus avium". Am. J. Med. Sci. 329 (3): 161–2. doi:10.1097/00000441-200503000-00011.

[[2]Enterococcus avium at steadyhealth.com. July 18, 2010.

[[3]Lee, Prescott P. MD; Donald A. Ferguson, Jr.; John J. Laffan. Vancomycin Resistant Enterococcus avium. Infectious Diseases in Clinical Practice: July 2004 12:4, pp. 239-244.

[[4] pp. 595, 2009, 1984-1989. Bergey, H., David, Boone, R., David, Manual of Systematic Bacteriology, Volume 3.

[[5]M. D. COLLINS, D. JONES, J. A. E. FARROW, R. KILPPER-BALZ, AND K. H. SCHLEIFER,International Journal of Systematic Bacteriology. Apr, 1984, pp. 220-223 DOI#:0020-7713/84/020220-04

7. Collins, M. D., and D. Jones. 1979. The distribution of isoprenoid quinones in streptococci of serological groups D and N. J. Gen. Microbiol. 114:27-33.

8. Deibel, R. H., and H. W. Seeley. 1974. Streptococcaceae p. 490-509. In R. E. Buchanan and N. E. Gibbons (ed.), Bergey’s manual of determinative bacteriology, 8th ed. The Williams & Wilkins Co., Baltimore.

9. Farrow, J. A. E., D. Jones, B. A. Phillips, and M. D. Collins. 1983. Taxodomic studies on some group D streptococci. J. Gen. Microbiol. 129:1423-1432.

10. Jones, D., M. J. Sackin, and P. H. A. Sneath. 1972. A numerical taxonomic study of streptococci of serological group D. J. Gen. Microbiol. 72:439-450.

11. Nowlan, S. S., and R. H. Deibel. 1967. Group Q streptococci. I. Ecology, serology, physiology, and relationship to established enterococci. J. Bac teriol. 94:291-296.

12. Schleifer, K. H., and 0. Kandler. 1972. Peptidoglycan types of bacterial cell walls and their taxonomic implications. Bacteriol. Rev. 36:407-477.

13. Schleifer, K. H., and R. Kilpper-Bdz. Transfer of Streptococcus faecalis and Streptococcus faecium to the genus Enterococcus nom. rev. as Enterococcus faecalis comb.nov. and Enterococcus faecium comb.nov. Int. J. Syst. Bacteriol. 34:31-34.

14. Hensyl,R., William. Forlifer, E., Linda, Wrzosek , Lorraine, Rosenberger, E., Wilma, Felton, J., Barbara., 2000 Bergey’s Manual of Determinative bacteriology. Lippincott Williams & Wilkins. Pp 527-536.


Edited by Edited by Kayla Ferrara a student of Dr. Lisa R. Moore, University of Southern Maine, Department of Biological Sciences, [6]