Difference between revisions of "Shewanella loihica"

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==Description and significance==
 
==Description and significance==
  
[[Image:Shewanella_loihica.jpg‎ ]]
 
  
PV-4T marine bacterial strain of ''Shewanella loihica'' was isolated at the deep-sea, hydrothermal Naha Vent from iron-rich microbial mats on the South Rift of Loihi Seamount, Hawaii, in the Pacific Ocean. The bacteria was noted as orange and rodlike with a mean length of 1.8 µm and mean width of 0.7 µm. Growth on Luria–Bertani agar plates showed ''S. loihica'' to be psychrotolerant at temperatures between 0-42 degrees C [http://ijs.sgmjournals.org/cgi/content/full/56/8/1911#T1 (Haichun Gao et al.)]. The ability of Shewanella to survive at such extremes in temperature in conjunction with their notable respiratory diversity make these bacterial species supreme interests of study. Shewanella have been investigated in the past of understand how their physiology contribute to their varied roles in the environment and have allowed for applicable uses in biotechnology [http://www.ncbi.nlm.nih.gov/sites/entrez?Db=pubmed&Cmd=ShowDetailView&TermToSearch=17506682&ordinalpos=7&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum (Gralnick JA et al.)]. Shewanella have also been linked to pathogenetic potentiality with respect to rare cases of gastrointestinal infection in recent reports in both Israeli & Japanese hospitals [http://www.springerlink.com/content/5r31843538842132 (Otsuka T et al.)].
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The PV-4T marine bacterial strain of ''Shewanella loihica'' was isolated at the deep-sea, hydrothermal Naha Vent from iron-rich microbial mats on the South Rift of Loihi Seamount, Hawaii, in the Pacific Ocean. The bacteria was noted as orange and rodlike with a mean length of 1.8 µm and mean width of 0.7 µm. Growth on Luria–Bertani agar plates showed ''S. loihica'' to be psychrotolerant at temperatures between 0-42 degrees C [http://ijs.sgmjournals.org/cgi/content/full/56/8/1911#T1 (Haichun Gao et al.)]. The ability of Shewanella to survive at such extremes in temperature in conjunction with their notable respiratory diversity make these bacterial species supreme interests of study. Shewanella have been investigated in the past to understand how their physiology contributes to their varied roles in the environment and have allowed for applicable uses in biotechnology [http://www.ncbi.nlm.nih.gov/sites/entrez?Db=pubmed&Cmd=ShowDetailView&TermToSearch=17506682&ordinalpos=7&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum (Gralnick JA et al.)]. Shewanella are also potentially pathogenic with respect to rare cases of gastrointestinal infection in recent reports in both Israeli & Japanese hospitals [http://www.springerlink.com/content/5r31843538842132 (Otsuka T et al.)].
  
 
==Genome structure==
 
==Genome structure==
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The loihica genome is recorded at having 4602594 nucleotides, 3859 protein genes, and 124 RNA genes [http://www.genome.jp/kegg-bin/show_organism?org=slo (Kegg Encyclopedia)]. PV-4(T) exhibited 16S rRNA gene sequence similarity levels of 99.6% to ''Shewanella aquimarina'', 97.5 % to ''S. marisflavi'', 50.5 % to ''S. aquimarina'' and 8.5 % to ''S. marisflavi'' [http://genome.jgi-psf.org/draft_microbes/she_p/she_p.home.html (JGI Microbes)]. GC content of ''Shewanella loihica PV-4'', as taken from the NCBI database, is 53.7%.
+
The ''S. loihica'' genome is recorded as having 4,602,594 nucleotides, 3,859 protein genes, and 124 RNA genes [http://www.genome.jp/kegg-bin/show_organism?org=slo (Kegg Encyclopedia)]. PV-4(T) exhibited 16S rRNA gene sequence similarity levels of 99.6% to ''Shewanella aquimarina'', 97.5 % to ''S. marisflavi'', 50.5 % to ''S. aquimarina'' and 8.5 % to ''S. marisflavi'' [http://genome.jgi-psf.org/draft_microbes/she_p/she_p.home.html (JGI Microbes)]. The GC content of ''Shewanella loihica PV-4'', as taken from the NCBI database, is 53.7%.
  
 
==Cell structure and metabolism==
 
==Cell structure and metabolism==
The ''S. loihica'' is noted as being Gram-negative (having both outer and inner membranes) and motile through polar flagella [http://ijs.sgmjournals.org/cgi/content/full/56/8/1911#T1 (Haichun Gao et al.)]. Metabolizing through facultative means, ''S. loihica'' has been studied extensively for its electron transport systems and ability to use a variety of electron acceptors under anaerobic conditions. Such compounds include iron, manganese, uranium, nitrate, nitrite and fumurate, to name a few [http://genome.jgi-psf.org/draft_microbes/she_p/she_p.home.html (JGI Microbes)].
+
The ''S. loihica'' is noted as being Gram-negative (having both outer and inner membranes) and motile through polar flagella [http://ijs.sgmjournals.org/cgi/content/full/56/8/1911#T1 (Haichun Gao et al.)]. Metabolizing through facultative means, ''S. loihica'' has been studied extensively for its electron transport systems and ability to use a variety of electron acceptors under anaerobic conditions. Such compounds include iron, manganese, uranium, nitrate, nitrite and fumurate, to name a few [http://genome.jgi-psf.org/draft_microbes/she_p/she_p.home.html (JGI Microbes)]. Studies with ''Shewanella putrefaciens'' imply the use of quinone-derivatives as electron shuttles to ferric oxides [http://www.nature.com/nature/journal/v405/n6782/full/405094a0.html (Newman et al.)] and the notable presence of Q-7 and Q-8 ubiquinones as well as MK-7 menaquinone in the PV-4 strain of ''S. loihica'' offer future analysis of this reduction mechanism [http://ijs.sgmjournals.org/cgi/content/full/56/8/1911#T1 (Haichun Gao et al.)].
  
 
==Ecology==
 
==Ecology==
Shewanella are distributed worldwide with a knack for surviving at extremely low temperatures. ''S. loihica'' was found to grow at temperatures between 0 to 42°C and pH 4.5–10.0 with optimal growth found at temperatures induced at 18 °C and pH range of 6.0 – 8.0 [http://ijs.sgmjournals.org/cgi/content/full/56/8/1911#T1 (Haichun Gao et al.)]. They are facultative anaerobes, able to grow within or without the presence of oxygen in the surrounding environment.
+
Shewanella are are facultative anaerobes, able to grow with or without the presence of oxygen in the surrounding environment. The species is distributed worldwide with a knack for surviving at extremely low temperatures. ''S. loihica'' was found to grow at temperatures between 0 to 42°C and pH 4.5–10.0 with optimal growth found at temperatures of 18 °C and pH range of 6.0 – 8.0 [http://ijs.sgmjournals.org/cgi/content/full/56/8/1911#T1 (Haichun Gao et al.)]. The PV-4 strain was an environmental isolate from the Naha Vents, Hawaii, in the Pacific Ocean.
  
 
==Pathology==
 
==Pathology==
(How does this organism cause disease?  Human, animal, plant hosts?  Virulence factors, as well as patient symptoms.)
+
There has yet to be a recorded case of ''S. loihica'' having pathogenic capabilities. However, strains of Shewanella have been found to be the cause of gastrointestinal related afflictions. ''Shewanella septicemia'' was implicated in the death of a 67 year old Japanese man as a result of a lethal sepsis in conjunction with liver failure [http://www.springerlink.com/content/5r31843538842132 (Otsuka T et al.)]. Another case details Shewanella infections following gastric lavage of a patient with gastrointestinal bleeding [http://www.ncbi.nlm.nih.gov/sites/entrez?Db=pubmed&Cmd=ShowDetailView&TermToSearch=17454904&ordinalpos=11&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum (Saidel-Odes et al.)].
  
 
==Application to Biotechnology==
 
==Application to Biotechnology==
"They are capable of using a variety of compounds as electron acceptors, including oxygen, iron, manganese, uranium, nitrate, nitrite, fumarate, to name a few. This ability makes Shewanella important for bioremediation of contaminated metals and radioactive wastes." (Shewanella loihica PV-4. 2005, JGI Microbes, 1 May 2007. <http://genome.jgi-psf.org/draft_microbes/she_p/she_p.home.html>)
+
Shewanella's flexible use of such a varied number of electron acceptors allows for applications of the bacteria in bioremediation of contaminated metals and radioactive wastes [http://genome.jgi-psf.org/draft_microbes/she_p/she_p.home.html (JGI Microbes)], as well as chlorinated compounds and other environmental pollutants. Biotechnological applications of the species extend also to energy-generating biocatalysis [http://www.ncbi.nlm.nih.gov/sites/entrez?Db=pubmed&Cmd=ShowDetailView&TermToSearch=17506682&ordinalpos=7&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum (Gralnick JA et al.)].
  
 
==Current Research==
 
==Current Research==
  
Based on phylogenetic and phenotypic characteristics, bacterium PV-4 was classified in the genus Shewanella within a distinct novel species. The name Shewanella loihica sp. nov. is proposed. ("Shewanella loihica sp. nov., isolated from iron-rich microbial mats in the Pacific Ocean." International Union of Microbiological Societies. 2006. 1 May 2007. <http://ijs.sgmjournals.org/cgi/content/full/56/8/1911#T1>)
+
Based on phylogenetic and phenotypic characteristics, bacterium PV-4 was classified in the genus Shewanella within a distinct novel species. The name ''Shewanella loihica sp. nov.'' is proposed [http://ijs.sgmjournals.org/cgi/content/full/56/8/1911#T1 (Haichun Gao et al.)].
  
 
==References==
 
==References==
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Gralnick JA, Hau HH. "Ecology and Biotechnology of the Genus Shewanella." Annual Review of Microbiology. Expected release Volume 60 (2007) June 1 2007 [http://www.ncbi.nlm.nih.gov/sites/entrez?Db=pubmed&Cmd=ShowDetailView&TermToSearch=17506682&ordinalpos=7&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum].
 
Gralnick JA, Hau HH. "Ecology and Biotechnology of the Genus Shewanella." Annual Review of Microbiology. Expected release Volume 60 (2007) June 1 2007 [http://www.ncbi.nlm.nih.gov/sites/entrez?Db=pubmed&Cmd=ShowDetailView&TermToSearch=17506682&ordinalpos=7&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum].
  
Haichun Gao, Anna Obraztova, Nathan Stewart, Radu Popa, James K. Fredrickson, James M. Tiedje, Kenneth H. Nealson and Jizhong Zhou. "Shewanella loihica sp. nov., isolated from iron-rich microbial mats in the Pacific Ocean." <u>International Union of Microbiological Societies</u>. 2006. 1 May 2007. [http://ijs.sgmjournals.org/cgi/content/full/56/8/1911#T1].
+
Haichun Gao; Obraztova, Anna; Stewart, Nathan; Popa, Radu; Fredrickson, James K.; James M. Tiedje, Kenneth H. Nealson and Jizhong Zhou. "Shewanella loihica sp. nov., isolated from iron-rich microbial mats in the Pacific Ocean." <u>International Union of Microbiological Societies</u>. 2006. 1 May 2007. [http://ijs.sgmjournals.org/cgi/content/full/56/8/1911#T1].
 +
 
 +
Newman, Dianne K and Roberto Kolter. "A role for excreted quinones in extracellular electron transfer". <u>Nature</u> 405 4 June 2007 [http://www.nature.com/nature/journal/v405/n6782/full/405094a0.html].
  
 
Otsuka T, Noda T, Noguchi A, Nakamura H, Ibaraki K, Yamaoka K. "Shewanella infection in decompensated liver disease: a septic case." <u>Journal of Gastroenterology</u>. Volume 42 (January 2007) June 1 2007 [http://www.springerlink.com/content/5r31843538842132].
 
Otsuka T, Noda T, Noguchi A, Nakamura H, Ibaraki K, Yamaoka K. "Shewanella infection in decompensated liver disease: a septic case." <u>Journal of Gastroenterology</u>. Volume 42 (January 2007) June 1 2007 [http://www.springerlink.com/content/5r31843538842132].
 +
 +
Saidel-Odes, Lisa; Borer, Abraham; Riesenberg; Schlaeffer, Francisc. "Shewanella spp. infection following treatment for upper gastrointestinal bleeding." <u>Scandinavian Journal of Infectious Diseases</u>. Volume 39 (2007) 4 June 2007 [http://www.ncbi.nlm.nih.gov/sites/entrez?Db=pubmed&Cmd=ShowDetailView&TermToSearch=17454904&ordinalpos=11&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum].
  
 
Kegg Encyclopedia. 1 May 2007 [http://www.genome.jp/kegg-bin/show_organism?org=slo].
 
Kegg Encyclopedia. 1 May 2007 [http://www.genome.jp/kegg-bin/show_organism?org=slo].
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Shewanella loihica PV-4. <u>US DOE Joint Genome Institute</u>. 4 June 2007 [http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=13906].
 
Shewanella loihica PV-4. <u>US DOE Joint Genome Institute</u>. 4 June 2007 [http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=13906].
 +
  
 
Edited by Niru Sivakumar, a student of [mailto:ralarsen@ucsd.edu Rachel Larsen] and Kit Pogliano
 
Edited by Niru Sivakumar, a student of [mailto:ralarsen@ucsd.edu Rachel Larsen] and Kit Pogliano
 +
 +
KMG

Latest revision as of 20:02, 6 May 2011

This is a curated page. Report corrections to Microbewiki.

A Microbial Biorealm page on the genus Shewanella loihica

Classification

Higher order taxa

Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Shewanellaceae; Shewanella; Shewanella loihica

Species

NCBI: Taxonomy

Shewanella loihica

Description and significance

The PV-4T marine bacterial strain of Shewanella loihica was isolated at the deep-sea, hydrothermal Naha Vent from iron-rich microbial mats on the South Rift of Loihi Seamount, Hawaii, in the Pacific Ocean. The bacteria was noted as orange and rodlike with a mean length of 1.8 µm and mean width of 0.7 µm. Growth on Luria–Bertani agar plates showed S. loihica to be psychrotolerant at temperatures between 0-42 degrees C (Haichun Gao et al.). The ability of Shewanella to survive at such extremes in temperature in conjunction with their notable respiratory diversity make these bacterial species supreme interests of study. Shewanella have been investigated in the past to understand how their physiology contributes to their varied roles in the environment and have allowed for applicable uses in biotechnology (Gralnick JA et al.). Shewanella are also potentially pathogenic with respect to rare cases of gastrointestinal infection in recent reports in both Israeli & Japanese hospitals (Otsuka T et al.).

Genome structure

NCBI: [http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=13906 ]

The S. loihica genome is recorded as having 4,602,594 nucleotides, 3,859 protein genes, and 124 RNA genes (Kegg Encyclopedia). PV-4(T) exhibited 16S rRNA gene sequence similarity levels of 99.6% to Shewanella aquimarina, 97.5 % to S. marisflavi, 50.5 % to S. aquimarina and 8.5 % to S. marisflavi (JGI Microbes). The GC content of Shewanella loihica PV-4, as taken from the NCBI database, is 53.7%.

Cell structure and metabolism

The S. loihica is noted as being Gram-negative (having both outer and inner membranes) and motile through polar flagella (Haichun Gao et al.). Metabolizing through facultative means, S. loihica has been studied extensively for its electron transport systems and ability to use a variety of electron acceptors under anaerobic conditions. Such compounds include iron, manganese, uranium, nitrate, nitrite and fumurate, to name a few (JGI Microbes). Studies with Shewanella putrefaciens imply the use of quinone-derivatives as electron shuttles to ferric oxides (Newman et al.) and the notable presence of Q-7 and Q-8 ubiquinones as well as MK-7 menaquinone in the PV-4 strain of S. loihica offer future analysis of this reduction mechanism (Haichun Gao et al.).

Ecology

Shewanella are are facultative anaerobes, able to grow with or without the presence of oxygen in the surrounding environment. The species is distributed worldwide with a knack for surviving at extremely low temperatures. S. loihica was found to grow at temperatures between 0 to 42°C and pH 4.5–10.0 with optimal growth found at temperatures of 18 °C and pH range of 6.0 – 8.0 (Haichun Gao et al.). The PV-4 strain was an environmental isolate from the Naha Vents, Hawaii, in the Pacific Ocean.

Pathology

There has yet to be a recorded case of S. loihica having pathogenic capabilities. However, strains of Shewanella have been found to be the cause of gastrointestinal related afflictions. Shewanella septicemia was implicated in the death of a 67 year old Japanese man as a result of a lethal sepsis in conjunction with liver failure (Otsuka T et al.). Another case details Shewanella infections following gastric lavage of a patient with gastrointestinal bleeding (Saidel-Odes et al.).

Application to Biotechnology

Shewanella's flexible use of such a varied number of electron acceptors allows for applications of the bacteria in bioremediation of contaminated metals and radioactive wastes (JGI Microbes), as well as chlorinated compounds and other environmental pollutants. Biotechnological applications of the species extend also to energy-generating biocatalysis (Gralnick JA et al.).

Current Research

Based on phylogenetic and phenotypic characteristics, bacterium PV-4 was classified in the genus Shewanella within a distinct novel species. The name Shewanella loihica sp. nov. is proposed (Haichun Gao et al.).

References

Gralnick JA, Hau HH. "Ecology and Biotechnology of the Genus Shewanella." Annual Review of Microbiology. Expected release Volume 60 (2007) June 1 2007 [1].

Haichun Gao; Obraztova, Anna; Stewart, Nathan; Popa, Radu; Fredrickson, James K.; James M. Tiedje, Kenneth H. Nealson and Jizhong Zhou. "Shewanella loihica sp. nov., isolated from iron-rich microbial mats in the Pacific Ocean." International Union of Microbiological Societies. 2006. 1 May 2007. [2].

Newman, Dianne K and Roberto Kolter. "A role for excreted quinones in extracellular electron transfer". Nature 405 4 June 2007 [3].

Otsuka T, Noda T, Noguchi A, Nakamura H, Ibaraki K, Yamaoka K. "Shewanella infection in decompensated liver disease: a septic case." Journal of Gastroenterology. Volume 42 (January 2007) June 1 2007 [4].

Saidel-Odes, Lisa; Borer, Abraham; Riesenberg; Schlaeffer, Francisc. "Shewanella spp. infection following treatment for upper gastrointestinal bleeding." Scandinavian Journal of Infectious Diseases. Volume 39 (2007) 4 June 2007 [5].

Kegg Encyclopedia. 1 May 2007 [6].

Shewanella loihica PV-4. JGI Microbes. (2005) 1 May 2007 [7].

Shewanella loihica PV-4. US DOE Joint Genome Institute. 4 June 2007 [8].


Edited by Niru Sivakumar, a student of Rachel Larsen and Kit Pogliano

KMG