Skin: Difference between revisions

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===Location and Significance===
===Location and Significance===
The skin is one of the largest organs of the body located on the outer surface the body. The skin acts as a barrier protecting against infections and preventing moisture from escaping. Skin is composed of variety of niches which are colonized post-natal, with pH ranges, temperature, moisture, and sebum content [8].  
The skin is one of the largest organs of the body located on the outer surface the body. The skin acts as a barrier protecting against infections and preventing moisture from escaping.  


Skin epithelium functions to keep microbes off the rest if the body by:
Skin epithelium functions to keep microbes off the rest if the body by:
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Even host characteristics such as age, gender, host’s nutrition, stress, emotional state, disability, hospitalization, personal hygiene, lifestyle, occupation, living conditions, and so on can affect the skin environment[1].
Even host characteristics such as age, gender, host’s nutrition, stress, emotional state, disability, hospitalization, personal hygiene, lifestyle, occupation, living conditions, and so on can affect the skin environment[1].


==WHO LIVES THERE?==
==WHO LIVES THERE?==

Revision as of 07:09, 29 August 2008

General Introduction

The skin is part of what is called the integumentary system, when included with the hair, nails, glands, sensory receptors, muscles, and nerves associated with it [2]. It is an organ that is composed of the inner dermis and the outer epithelium. Because it has a surface area of 1.75 meters squared and a weight of 5kg, it is commonly refered to as one of the largest organs of the body[2]. The skin as a whole is not uniform, so there are areas that are dry and other areas that are moist [2].

Skin layers From the Medline Plus


DESCRIPTION OF THE NICHE

Location and Significance

The skin is one of the largest organs of the body located on the outer surface the body. The skin acts as a barrier protecting against infections and preventing moisture from escaping.

Skin epithelium functions to keep microbes off the rest if the body by:

  • Acting as a physical barrier against microbe penetration to tissues underneath [2]
  • Secreting a mucus layer so that microbes can not permanently attach to the epithelial cells beneath [2]
  • Shedding or keratinization of the outermost skin cells so microbes are removed from the body [2]
  • Secreting antimicrobial peptides and proteins to kill off microbes or at least prevent their growth [2].

Physical Conditions

What are the conditions in your niche? Temperature, pressure, pH, moisture, etc.

Skin temperature of the skin varies depending on the location on the body. Toes and fingers tend to have the lowest temperatures, while the axillae and the groin tend to have the highest[1]. The temperatures are usually 25-35 degrees Celcius, which is ideal for mesophiles rather than thermophiles or psychrophiles [1]. The temperature only varies slightly so it there is not a dramatic selection for microbes colonizing certain areas, but does affect the growth rate of the microbes present [1].

The moisture content on the skin is generally low, which limits the survival and growth of microbes. However, the eccrine glands can produce sweat, which increases the moisture on the surface of the skin; especially in areas where evaporation does not occur easily, such as the toes and axillae [1]. Microbes tend to have greater populations in those occluded areas since there is an accumulation of secretions[1].

The skin generally has a high oxygen concentration, so it acts primarily as an aerobic environment for anaerobes to grow [1]. However, the hair follicles inside the skin provide a microaerophillic and/or anaerobic environment that have lower levels of oxygen, so that microaerophiles and obligate anaerobes can also grow [1].

The pH of the skin is usually acidic, but the exact pH may vary depending on the specific location. The skin’s acidity results from lactic acid from the host cells and the microbes, the amino acids from sweat, the fatty acids from sebum, and acids produced during keratinization [1]. Although the skin is acidic, it is only suitable for neutrophile growth and not acidophiles or alkaliphiles[1].

Influence by Adjacent Communities (if any)

Is your niche close to another niche or influenced by another community of organisms?

The skin is always exposed to the external environment. Contact with dirt, for example, can introduce non-indigenous or harmful microbes onto the skin. Even air can influence the microbe communities by preventing the aireborne microbes from settling on the skin [2]. The openings of the host’s body such as the nose, mouth, urethra, and rectum can also introduce microbes from those regions on to the skin [2].

Conditions Causing Environment Changes

Do any of the physical conditions change? Are there chemicals, other organisms, nutrients, etc. that might change the community of your niche.

Variations in the amount or concentration of sebaceous and sudoriferous glands can affect the skin's temperature, water content, concentration nutrients, osmolarity, pH, and concentration of antimicrobial substances [2]. This is because sebaceous glands are major sources of nutrients for microbes, while the sudoriferous glands produce sweat as a source of water on the skin [2]. Both glands also produce antimicrobial substances important to the skin [2].

Clothing, air-conditioning, or housing, for example, can be considered forms of protection against extreme environments. However, the conjunctiva and exposed regions of the skin have greater fluctuations in temp, humidity, and so forth, in comparison to other bodily systems [1]. Covering areas of the skin, for instance, can prevent the evaporation of water and encourage a build up of secretions and alter the pH [2].

Even host characteristics such as age, gender, host’s nutrition, stress, emotional state, disability, hospitalization, personal hygiene, lifestyle, occupation, living conditions, and so on can affect the skin environment[1].

WHO LIVES THERE?

The Microbes Present

You may refer to organisms by genus or by genus and species, depending upon how detailed the your information might be. If there is already a microbewiki page describing that organism, make a link to it.

Gram stain of Micrococcus, commonly isolated from the skin. From the Todar's Online Textbook of Bacteriology
















Microbial Interactions

Microbe-microbe interactions on the skin tend to either be beneficial or antagonistic.

  • Beneficial interactions between microbes, whether it is commensalism or synerism, exist between many microbes on the skin.



The nutritional web of interactions shown between the microbes is a simple to understand the benefits of other microbes in the niche and can be easily interpreted. For instance, propionibacteria is shown to excrete acids that can be used by micrococci, Acinetobacter spp., and brevibacteria as a source of carbon and energy. Lactate produced by staphylococci can be used as a carbon and energy source for Acinetobacter spp and micrococci as well.

In addition to providing nutritional benefits , interacting microbes can also provide hospitable environments for other microbes. This type of commensalism is shown by Malassezia spp., which metabolizes lauric acid that is toxic to propionibacterim acnes, so that the propionibacterim acnes can survive where lauric acid is plentiful [1].

  • Antagonistic substances may be produced by cutaneous microbes for competition against non-indigenous microbes.
    • CO2 is produced by many bacteria against dermophyte growth [1]
    • Lysozymes are produced by staphylococci which kills micrococci, Brevibacterium spp., and Corynebacterium spp. [1].
    • Proteases are produced by P. acnes to kill off other Propionibacterium spp. and staphylococci[1].
    • Propionic acid is produced by propionibacteria, which inhibits other species from growing at low pH’s on the skin [1].
    • Acetic acid is produced by propionibacteria and Dermabacter hominis to inhibit the growth of other species [1].
    • Lactic acid is produced by staphylococci and D. hominis to inhibit the growth of other species [1].
    • Bacteriocins are produced by staphylococci, Coryebacterium spp., Propionibacterium spp., Micrococcus spp., and Brevibacterium spp. to inhibit the growth of or kill cutaneous organisms [1].

Do the microbes change their environment?

Do they alter pH, attach to surfaces, secrete anything, etc. etc.

Do the microbes carry out any metabolism that affects their environment?

Do they ferment sugars to produce acid, break down large molecules, fix nitrogen, etc. etc.

  • Mal. globosa produces proteases that can break down skin proteins, so that amino acids become available[1]. It can also take more of a pathogenic role by producing toxic metabolites or hydrolases that degrade sebum, freeing fatty acids that came from sebaceous triglycerides, consuming certain saturated fatty acids, and leaving behind the unsaturated fatty acids on the skin which can cause irritation, inflammation, and flaking of the scalp [3].
  • Corynebacterium spp., staphylococci, and Brevibacterium spp. produce ureases which can break down urea into ammonium ions as a nitrogen source[1].


Current Research

Enter summaries of the most recent research. You may find it more appropriate to include this as a subsection under several of your other sections rather than separately here at the end. You should include at least FOUR topics of research and summarize each in terms of the question being asked, the results so far, and the topics for future study. (more will be expected from larger groups than from smaller groups)

Molecular Identification of the Malassezia Species (2008)

Polymerase chain reaction has recently been used to distinguish between the species within the genus Malassezia. Previous techniques for identification of the Malassezia species were based on morphological biochemical, and physiological characteristics that were complex and time consuming. PCR provides a fast and simple method of analyzing the internal transcribed spacer, which varies between species of Malassezia, as a means of differentiation. PCR was used to study four particular Malassezia species which include: Mal. globosa, Mal. furfur, Mal. sympodialasis, and Mal. restricta. The PCR method provides an efficient identification system of malassezia species that can be used in routine practices [4].


References

[Sample reference] Takai, K., Sugai, A., Itoh, T., and Horikoshi, K. "Palaeococcus ferrophilus gen. nov., sp. nov., a barophilic, hyperthermophilic archaeon from a deep-sea hydrothermal vent chimney". International Journal of Systematic and Evolutionary Microbiology. 2000. Volume 50. p. 489-500.

1. Wilson, Michael. Bacteriology of Humans: an Ecological Perspective. Blackwell Publishing, 2008.

2. Wilson, Michael. Microbial inhabitants of Humans: Their Ecology and Role in Health and Disease. Cambridge University Press, 2005.

3. Byung, I. R. and Dawson, T. L. ‘’The Role of Sebaceous Gland Activity and Scalp Microfloral Metabolism in the Etiology of Seborrheic Dermatitis and Dandruff.’’ Journal of Investigative Dermatology Symposium Proceedings (2005) 10, 194–197.

4. Affes, M., Salah, S. Ben., Makni, F., Sellami, H., and Ayadi, A. “Molecular Identification of Malassezia Species Isolated from Dermatitis Affections.” Journal compilation. Blackwell Publishing Ltd, 2008

5. Inamadar AC, Palit A. "The genus Malassezia and human disease." Indian J Dermatol Venereol Leprol [serial online] 2003 [cited 2008 Aug 26];69:265-70. Available from: http://www.ijdvl.com/text.asp?2003/69/4/265/4990

6. Kindo AJ, Sophia SK, Kalyani J, Anandan S. Identification of malassezia species. Indian J Med Microbiol [serial online] 2004 [cited 2008 Aug 26];22:179-81. Available from: http://www.ijmm.org/text.asp?2004/22/3/179/11214

7. Xu J, Saunders CW, Hu P, Grant RA, Boekhout T, Kuramae EE, et al. Dandruff-associated Malassezia genomes reveal convergent and divergent virulence traits shared with plant and human fungal pathogens. Proc Natl Acad Sci USA. 2007;104:18730–18735.

8. Elizabeth A. Grice, Heidi H. Kong, Gabriel Renaud, Alice C. Young, Gerard G. Bouffard, Robert W. Blakesley, Tyra G. Wolfsberg, Maria L. Turner, and Julia A. Segre. "A diversity profile of the human skin microbiota: NISC Comparative Sequencing Program." Genome Research. Cold Spring Harbor Laboratory Press 2008 July.

Edited by Patrick A. McGhee, Susan Lin, Eric Pham, Pavithra Ramasubramanian ____________________________________, students of Rachel Larsen