Template talk:Genus hollingsworth

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Classification

Domain: Bacteria, Phylum: Firmicutes, Class: Bacilli, Order: Bacillales, Family: Bacillales Family XII. Incertae Sedis, Genus: Exiguobacterium, Species: Unknown

Habitat Information

This soil organism was collected in the Hill Country of Fredericksburg, Texas. The soil was very soft and moist, about 5-6" in depth.

There are at least 13 different strains of exoquibacterium, the first being discovered in a potato plant by Collins et al. in 1983. Since that time, others have been found in the Siberian frost, glaciers in Greenland, Yellowstone National Park hot springs and various other locations of extreme temperatures.

Description and Significance

Exiguobacterium are small, irregular rod shaped bacteria, or coccobacilli. Stains performed on our organism revealed a positive gram stain and small capsules. This organism was negative for endospores. The ability of exiguobacterium to survive in extreme temperatures (-12C - 55C) and grow within a large range of pH (5-11) make this bacteria an important area of study. It has also shown to be tolerant of UV radiation and heavy metal stress.

Genome Structure

Describe the size and content of the genome. How many chromosomes? Circular or linear? Other interesting features? What is known about its sequence? Include S Ribosomal sequence that you obtained from PCR and sequencing here.

Nucleotide sequence - 16S rRNA genome

GCACGCCGCGTGAGTGATGAAGGTTTTCNGANNGTAAAACTCTGTTGTAAGGGAAGAACACGTACGAGAGGAAATGCTCGTACCTTGACGGTACCTTACGAGAAAGCCACGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGTGGCAAGCGTTGTCCGGAATTATTGGGCGTAAAGCGCGCGCAGGCGGCCTTTTAAGTCTGATGTGAAAGCCCCCGGCTCAACCGGGGAGGGCCATTGGAAACTGGAAGGCTTGAGTACAGAAGAGAAGAGTGGAATTCCACGTGTAGCGGTGAAATGCGTAGAGATGTGGAGGAACACCAGTGGCGAAGGCGACTCTTTGGTCTGTAACTGACGCTGAGGCGCGAAAGCGTGGGGAGCAAACAGGATTANATACCCTGGTAGTCCACGCCGTAAACGATGAGTGCTAGGTGTTGGGGGGTTTCCGCCCCTCAGTGCTGAAGCTAACGCATNTANGCACTCCGCCTGGNGAGTACGGCCGCAAGGCTNAAACTCNAAGGANTTGACGGGGACCCGCACAATCGGGGGCACGCCGCGTGAGTGATGAAGGTTTTCNGANNGTAAAACTCTGTTGTAAGGGAAGAACACGTACGAGAGGAAATGCTCGTACCTTGACGGTACCTTACGAGAAAGCCACGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGTGGCAAGCGTTGTCCGGAATTATTGGGCGTAAAGCGCGCGCAGGCGGCCTTTTAAGTCTGATGTGAAAGCCCCCGGCTCAACCGGGGAGGGCCATTGGAAACTGGAAGGCTTGAGTACAGAAGAGAAGAGTGGAATTCCACGTGTAGCGGTGAAATGCGTAGAGATGTGGAGGAACACCAGTGGCGAAGGCGACTCTTTGGTCTGTAACTGACGCTGAGGCGCGAAAGCGTGGGGAGCAAACAGGATTANATACCCTGGTAGTCCACGCCGTAAACGATGAGTGCTAGGTGTTGGGGGGTTTCCGCCCCTCAGTGCTGAAGCTAACGCATNTANGCACTCCGCCTGGNGAGTACGGCCGCAAGGCTNAAACTCNAAGGANTTGACGGGGACCCGCACAATCGGGG

Cell Structure, Metabolism and Life Cycle

Interesting features of cell structure; how it gains energy; what important molecules it produces.

Physiology and Pathogenesis

Biochemical characteristics, enzymes made, other characteristics that may be used to identify the organism; contributions to environment (if any).
If relevant, how does this organism cause disease? Human, animal, plant hosts? Virulence factors, as well as patient symptoms.

Gelatin Hydrolysis: gelatinase negative DNA Hydrolysis: DNase positive Lipid Hydrolysis: lipase negative Phenol Red Broth: Starch Hydrolysis: alpha-amylase positive Casein Hydrolysis: casease positive Methyl Red: positive for mixed acids Voges-Proskauer: negative Citrate: negative SIM: sulfur reduction - negative, indole reaction - negative, motility - light, feathery growth which indicates a weak positive Nitrate Reduction: does not reduce nitrate Urea Hydrolysis: negative Triple Iron Sugar: glucose and lactose fermentation, does not reduce sulfur Decarboxylation: does not produce decarboxylase Phenylalanine Deaminase: negative Oxidase: negative Eosin Methylene Blue Agar: negative Hektoen Enteric Agar: negative MacConkey Agar: negative Catalase: positive Blood Agar: gamma hemolysis Mannitol Salts Agar: growth, weak positive for mannitol fermentation Phenylethyl Alcohol Agar: growth, confirms that organism is Gram positive Bacitracin/Optochin Susceptibility: not susceptible to bacitracin or optochin Bile Esculin: hydrolyzes esculin 6.5% Salt Tolerance: negative Kirby-Bauer Antimicrobial Susceptibility Tests for disinfectants: strongly susceptible to bleach, lysol, and lavender but only weakly susceptible to tea tree oil Kirby-Bauer Antimicrobial Susceptibility Tests for antibiotics: strongly susceptible to ampicillin, linezolid, ticarcillin/clavulanic acid, and ceftazidime

Enzymes cleansed from exiguobacterium samples are alkaline protease, EKTA catalase, guanosine kinase, ATPases, dehydrogenase, and esterase. http://www.vp-scientific.com/reference-pdf/Extremophiles-2009-Vishnivetskaya.pdf

This bacteria has possible antimicrobial activity in that at least one of the species may aid in the digestion of plastics by mealworms. http://www.ncbi.nlm.nih.gov/pubmed/26390390

One species (Exiguobacterium sibiricum) may cause human skin infection. http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4257833/

Other strains of exiguobacterium are known to promote growth in plants. http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3299478/

References

http://www.bacterio.net/exiguobacterium.html

Author

Page authored by Danielle St.Romain and Heather McMillion, students of Prof. Kristine Hollingsworth at Austin Community College.