Thermoproteus neutrophilus: Difference between revisions

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==Classification==
==Classification==
 
''Thermoproteus neutrophilus''
Archaea; Crenarchaeota; Thermoprotei; Thermoproteales; Thermoproteaceae [Others may be used.  Use [http://www.ncbi.nlm.nih.gov/Taxonomy/ NCBI] link to find]
[Others may be used.  Use [http://www.ncbi.nlm.nih.gov/Taxonomy/ NCBI] link to find]


===Species===
===Species===
neutrophilus
''neutrophilus''
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''Genus species''
Archaea; Crenarchaeota; Thermoprotei; Thermoproteales; Thermoproteaceae; Thermoproteus; Thermoproteus neutrophilus
Thermoproteus neutrophilus


==Description and Significance==
==Description and Significance==
Describe the appearance, habitat, etc. of the organism, and why you think it is important.


Microorganisms belonging to the genus Thermoproteus are stiff rods with "golf club" like protrusions on their ends.  This structure may contribute to budding [3].
''Thermoprotesus neutrophilus'' can be described as hyperthermophilic and chemolithoautotrophic.  However, it has been shown to be facultatively autotrophic, using organic carbon sources when present [8].
 
Microorganisms belonging to the genus ''Thermoproteus'' are stiff rods with "golf club" like protrusions on their ends.  This structure may contribute to budding [4].
 
''Thermoproteus neutrophilus'' cells are approximately .4 um in diameter and anywhere between 1-80 um in length. They are nonmotile and lack flagella [3].
 
''Thermoproteus neutrophilus'' has been suspected of contributing to the corrosion of stainless steel vapor ducts.  Vapor ducts are important in the utilization of geothermal energy, a clean source of energy.  The impact of ''Thermoproteus neutrophilus'' could potentially affect the environment and the economy because decreased energy efficiency is very costly [7].
 
''Thermoproteus neutrophilus'' is commonly found in hot springs and solfataras.  It requires high temperatures and elemental sulfur, as an electron acceptor for growth [1].
 
 
[[File:Tn3.jpg|320px|thumb|center|Picture of ''Thermoproteus'']]


==Genome Structure==
==Genome Structure==
Describe the size and content of the genome.  How many chromosomes?  Circular or linear?  Other interesting features?  What is known about its sequence?


Thermoproteus neutrophilus has 1.77 million base pairs.  There are 2053 predicted genes.  It was originally classified in 1983 as belonging the the Thermoproteus genus.  However, based on rRNA and protein based phylogenetic trees, it has become clear that it is more closely related to the Pyrobaculum genus [4].
 
The ''Thermoproteus neutrophilus'' genome has 1.77 million base pairs and a circular chromosome.  There are 2053 predicted genes.  The genome has a GC content of 59.91%.  It was originally described in 1983 as belonging the the Thermoproteus genus.  However, based on rRNA and protein based phylogenetic trees, it has become clear that it is more closely related to the Pyrobaculum genus, being most closely related to the species ''Pyrobaculum islandicum'' [7].


==Cell Structure, Metabolism and Life Cycle==
==Cell Structure, Metabolism and Life Cycle==
Interesting features of cell structure; how it gains energy; what important molecules it produces.


Thermoproteus neutrophilus is an extreme thermophile, surviving at temperature up to 95 C.  It is an anaerobically growing, sulfur reducing autotroph. 


Thermoproteus neutrophilus cells are aseptate rods of approximately .4 um in diameter and anywhere between 1-80 um in lengthThey are nonmotile.
''Thermoproteus neutrophilus'' is an extreme thermophile, surviving at temperatures up to 95 C.  It is an anaerobically growing, sulfur reducing autotroph [3].  It is able to reduce elemental sulfur to hydrogen sulfide using hydrogen as an electron donor [1].  While not all of the details of ''T. neutrophilus''' metabolism have been completely elucidated, NMR studies have shown that it uses the reductive citric acid cycle to reduce carbon dioxide [5].
 
''Thermoproteus neutrophilus'' is Gram-negative staining.  The cell wall structure of ''Thermoproteus neutrophilus'' is somewhat unique.  It consists of a cytoplasmic membrane and a hexagonally packed S-layer, with no murein sacculus.  The outer side of the S-layer is smooth, while the cytoplasmic surface is sculptured, garnished with dome-like protuberances.  The S-layers have a high proportion of hydrophobic amino acids, and pores of 6 nm in diameterIt is the paracrystalline structure of the S-layer that makes it incredibly stable even in the presence of extreme heat and chemical treatment [3].


Thermoproteus neutrophilus are Gram-negative stainingThe cell wall structure of Thermoproteus neutrophilus is somewhat uniqueIt consists of a cytoplasmic membrane and a hexagonally packed S-layer, with no murein sacculus.  The outer side of the S-layer is smooth, while the cytoplasmic surface is sculptured, adorned with dome-shaped protrusionsThe S-layers have a high proportion of hydrophobic amino acids, and pores of 6 nm in diameter.  It is the paracrystalline structure of the S-layer that makes it incredibly stable even in the presence of extreme heat and chemical treatment [1].
As previously mentioned, the 16S rRNA sequence of ''T. neutrophilus'' suggests that it belongs in the genus Pyrobaculum rather than ''Thermoproteus''When comparing the genome of the organism ''Thermoproteus Tenax'' to ''Thermoproteus neutrophilus'' it is clear that ''Thermoproteus neutrophilus'' is more similar to ''Pyrobaculum.'' Also, ''Thermoproteus tenax'' is an acidophile, while ''Thermoproteus neutrophilus'' is a neutrophileHowever, ''Thermoproteus neutrophilus'' do not have flagella (a characteristic of ''Pyrobaculum''), grow at a lower temperature than most ''Pyrobaculum'', and use only elemental sulfur as an electron acceptor (whereas ''Pyrobaculum'' species typically are able to use more than one type of electron acceptor) [7].


==Ecology and Pathogenesis==
==Ecology and Pathogenesis==
Habitat; symbiosis; biogeochemical significance; contributions to environment.<br>
If relevant, how does this organism cause disease? Human, animal, plant hosts? Virulence factors, as well as patient symptoms.<br><br>


Members of the genus Thermoproteus are not human pathogens.  Thermoproteus inhabits solfataric areas, growing at extremely high temperatures at near neutral pH.
Members of the genus Thermoproteus are not human pathogens.  Thermoproteus inhabits solfataric areas, growing at extremely high temperatures at near neutral pH [1].
 
''Thermoproteus neutrophilus'' produces hydrogen sulfide, which is a compound that is harmful to human health and a detriment to the environment.  The presence of hydrogen sulfide has had an economic impact on the fishing industry.  It's presence in marine waters has caused massive reduction in fish populations in ceratin areas [2].  However, since Thermoproteus neutrophilus' natural habitats are primarily isolated to solfataric fields, hot springs, and other extremely hot areas which are not suitable for most forms of life, their toxic impact on other organisms and the environment is relatively limited.  However, as previously mentioned, the activity of ''Thermoproteus neutrophilus'' has been linked to pipe degradation in geothermal energy reactors.
 
[[File:solfatara.jpg|189px|thumb|center|Picture of a volcanic solfatara]]


==References==
==References==
1.  Huber, R.  Huber, H.  Stetter, K.O.  Toward the ecology of hyperthermophiles: biotypes, new isolation strategies and novel metabolic properties.  FEMS Microbiology Reviews.  2000.  Volume 24.  p. 615-623
1.  Huber, R.  Huber, H.  Stetter, K.O.  Toward the ecology of hyperthermophiles: biotypes, new isolation strategies and novel metabolic properties.  FEMS Microbiology Reviews.  2000.  Volume 24.  p. 615-623


2.  Messner, P. Pum, D. Margit, S. Stetter, K. Sleytr, U.  Ultrastructure of the Cell Envelope of the Archaebacteria Thermoproteus tenax and Thermoproteus neutrophilus.  Journal of Bacteriology.  1986.  Volume 166 Number 3 p.  1046-1054
2.  Lavik, G.  Stuermann, T.  Bruechert, V.  Van der Plas, A.  Detoxification of sulphidic African shelf waters by blooming chemolithotrophs.  Nature.  2009.  Volume 457.  p. 581-586
 
3.  Messner, P. Pum, D. Margit, S. Stetter, K. Sleytr, U.  Ultrastructure of the Cell Envelope of the Archaebacteria Thermoproteus tenax and Thermoproteus neutrophilus.  Journal of Bacteriology.  1986.  Volume 166 Number 3 p.  1046-1054
 
4.  Stetter, K.O.  Fiala, G.  Huber, G.  Huber, R.  Segerer, A.  Hyperthermophilic Microorganisms. FEMS Microbiology Reviews.  1990.  Volume 75.  p. 117-124.
 
5.  Strauss, G.  Eisenreich, W.  Bacher, A.  Fuchs, G.  13C-NMR study of autotrophic CO2 fixation pathways in the sulfur-reducing Achaebacterium Thermoproteus neutrophilus and the in the phototrophic Eubacterium Chloroflexus aurantiacus.  European Journal of Biochemistry.  1992.  Volume 205.  p. 853-866


3Stetter, K.OFiala, GHuber, G. Huber, RSegerer, A. Hyperthermophilic Microorganisms. FEMS Microbiology Reviews. 1990.  Volume 75.  p. 117-124.
6Thermoproteus neutrophilus V24StaUniversity of CaliforniaDate accessed: 18 April 2011http://genome.jgi-psf.org/thene/thene.home.html


4Strass, GEisenreich, WBacher, A.  Fuchs, G.  13C-NMR study of autotrophic CO2 fixation pathways in the sulfur-reducing Achaebacterium Thermoproteus neutrophilus and the in the phototrophic Eubacterium Chloroflexus aurantiacusEuropean Journal of Biochemistry. 1992Volume 205. p. 853-866
7Thermoproteus neutrophilus V24Sta (Thermoproteus neutrophilus V24Sta) Genome Browser GatewayUniversity of Califonia, Santa CruzGenome Bioinformatics Group of UC Santa CruzDate accessed: 27 February 2011http://microbes.ucsc.edu/cgi-bin/hgGateway?
org=Thermoproteus+neutrophilus+V24Sta&db=therNeut1&hgsid=544039


5.  Thermoproteus neutrophilus V24Sta (Thermoproteus neutrophilus V24Sta) Genome Browser Gateway.  University of Califonia, Santa Cruz. Genome Bioinformatics Group of UC Santa Cruz. Date accessed:  27 February 2011. http://microbes.ucsc.edu/cgi-bin/hgGateway?org=Thermoproteus+neutrophilus+V24Sta&db=therNeut1&hgsid=544039
8W. Hugo Ramos-Vera, Valérie Labonté, Michael Weiss, Julia Pauly,, and Georg Fuchs*
Regulation of Autotrophic CO2 Fixation in the Archaeon Thermoproteus neutrophilus
Journal of Bacteriology, October 2010, p. 5329-5340, Vol. 192, No. 20


==Author==
==Author==
Page authored by _____, student of [http://www.kbs.msu.edu/faculty/lennon/ Prof. Jay Lennon] at Michigan State University.
Page authored by Emily Rustad and Alison Rosaen, students of [http://www.kbs.msu.edu/faculty/lennon/ Prof. Jay Lennon] at Michigan State University.


<-- Do not remove this line-->[[Category:Pages edited by students of Jay Lennon at Michigan State University]]
<-- Do not remove this line-->[[Category:Pages edited by students of Jay Lennon at Michigan State University]]

Latest revision as of 13:54, 23 April 2011

This student page has not been curated.

Classification

Thermoproteus neutrophilus

[Others may be used.  Use NCBI link to find]

Species

neutrophilus

NCBI: Taxonomy

Archaea; Crenarchaeota; Thermoprotei; Thermoproteales; Thermoproteaceae; Thermoproteus; Thermoproteus neutrophilus

Description and Significance

Thermoprotesus neutrophilus can be described as hyperthermophilic and chemolithoautotrophic. However, it has been shown to be facultatively autotrophic, using organic carbon sources when present [8].

Microorganisms belonging to the genus Thermoproteus are stiff rods with "golf club" like protrusions on their ends. This structure may contribute to budding [4].

Thermoproteus neutrophilus cells are approximately .4 um in diameter and anywhere between 1-80 um in length. They are nonmotile and lack flagella [3].

Thermoproteus neutrophilus has been suspected of contributing to the corrosion of stainless steel vapor ducts. Vapor ducts are important in the utilization of geothermal energy, a clean source of energy. The impact of Thermoproteus neutrophilus could potentially affect the environment and the economy because decreased energy efficiency is very costly [7].

Thermoproteus neutrophilus is commonly found in hot springs and solfataras. It requires high temperatures and elemental sulfur, as an electron acceptor for growth [1].


Picture of Thermoproteus

Genome Structure

The Thermoproteus neutrophilus genome has 1.77 million base pairs and a circular chromosome. There are 2053 predicted genes. The genome has a GC content of 59.91%. It was originally described in 1983 as belonging the the Thermoproteus genus. However, based on rRNA and protein based phylogenetic trees, it has become clear that it is more closely related to the Pyrobaculum genus, being most closely related to the species Pyrobaculum islandicum [7].

Cell Structure, Metabolism and Life Cycle

Thermoproteus neutrophilus is an extreme thermophile, surviving at temperatures up to 95 C. It is an anaerobically growing, sulfur reducing autotroph [3]. It is able to reduce elemental sulfur to hydrogen sulfide using hydrogen as an electron donor [1]. While not all of the details of T. neutrophilus' metabolism have been completely elucidated, NMR studies have shown that it uses the reductive citric acid cycle to reduce carbon dioxide [5].

Thermoproteus neutrophilus is Gram-negative staining. The cell wall structure of Thermoproteus neutrophilus is somewhat unique. It consists of a cytoplasmic membrane and a hexagonally packed S-layer, with no murein sacculus. The outer side of the S-layer is smooth, while the cytoplasmic surface is sculptured, garnished with dome-like protuberances. The S-layers have a high proportion of hydrophobic amino acids, and pores of 6 nm in diameter. It is the paracrystalline structure of the S-layer that makes it incredibly stable even in the presence of extreme heat and chemical treatment [3].

As previously mentioned, the 16S rRNA sequence of T. neutrophilus suggests that it belongs in the genus Pyrobaculum rather than Thermoproteus. When comparing the genome of the organism Thermoproteus Tenax to Thermoproteus neutrophilus it is clear that Thermoproteus neutrophilus is more similar to Pyrobaculum. Also, Thermoproteus tenax is an acidophile, while Thermoproteus neutrophilus is a neutrophile. However, Thermoproteus neutrophilus do not have flagella (a characteristic of Pyrobaculum), grow at a lower temperature than most Pyrobaculum, and use only elemental sulfur as an electron acceptor (whereas Pyrobaculum species typically are able to use more than one type of electron acceptor) [7].

Ecology and Pathogenesis

Members of the genus Thermoproteus are not human pathogens. Thermoproteus inhabits solfataric areas, growing at extremely high temperatures at near neutral pH [1].

Thermoproteus neutrophilus produces hydrogen sulfide, which is a compound that is harmful to human health and a detriment to the environment. The presence of hydrogen sulfide has had an economic impact on the fishing industry. It's presence in marine waters has caused massive reduction in fish populations in ceratin areas [2]. However, since Thermoproteus neutrophilus' natural habitats are primarily isolated to solfataric fields, hot springs, and other extremely hot areas which are not suitable for most forms of life, their toxic impact on other organisms and the environment is relatively limited. However, as previously mentioned, the activity of Thermoproteus neutrophilus has been linked to pipe degradation in geothermal energy reactors.

Picture of a volcanic solfatara

References

1. Huber, R. Huber, H. Stetter, K.O. Toward the ecology of hyperthermophiles: biotypes, new isolation strategies and novel metabolic properties. FEMS Microbiology Reviews. 2000. Volume 24. p. 615-623

2. Lavik, G. Stuermann, T. Bruechert, V. Van der Plas, A. Detoxification of sulphidic African shelf waters by blooming chemolithotrophs. Nature. 2009. Volume 457. p. 581-586

3. Messner, P. Pum, D. Margit, S. Stetter, K. Sleytr, U. Ultrastructure of the Cell Envelope of the Archaebacteria Thermoproteus tenax and Thermoproteus neutrophilus. Journal of Bacteriology. 1986. Volume 166 Number 3 p. 1046-1054

4. Stetter, K.O. Fiala, G. Huber, G. Huber, R. Segerer, A. Hyperthermophilic Microorganisms. FEMS Microbiology Reviews. 1990. Volume 75. p. 117-124.

5. Strauss, G. Eisenreich, W. Bacher, A. Fuchs, G. 13C-NMR study of autotrophic CO2 fixation pathways in the sulfur-reducing Achaebacterium Thermoproteus neutrophilus and the in the phototrophic Eubacterium Chloroflexus aurantiacus. European Journal of Biochemistry. 1992. Volume 205. p. 853-866

6. Thermoproteus neutrophilus V24Sta. University of California. Date accessed: 18 April 2011. http://genome.jgi-psf.org/thene/thene.home.html

7. Thermoproteus neutrophilus V24Sta (Thermoproteus neutrophilus V24Sta) Genome Browser Gateway. University of Califonia, Santa Cruz. Genome Bioinformatics Group of UC Santa Cruz. Date accessed: 27 February 2011. http://microbes.ucsc.edu/cgi-bin/hgGateway? org=Thermoproteus+neutrophilus+V24Sta&db=therNeut1&hgsid=544039

8. W. Hugo Ramos-Vera, Valérie Labonté, Michael Weiss, Julia Pauly,, and Georg Fuchs* Regulation of Autotrophic CO2 Fixation in the Archaeon Thermoproteus neutrophilus Journal of Bacteriology, October 2010, p. 5329-5340, Vol. 192, No. 20

Author

Page authored by Emily Rustad and Alison Rosaen, students of Prof. Jay Lennon at Michigan State University.

<-- Do not remove this line-->