User:Bouradee.kim: Difference between revisions

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==Classification==
===Higher order taxa===
Domain: Bacteria;
Phylum: Firmicutes;
Class: Bacilli;
Order: Bacillales;
Family: Bacillaceae;
Genus: <i>Bacillus</i>;
Species: <i>B. oceanisediminis</i>;
Strain: H2<sup>T</sup>
===Species===
<i>Bacillus oceanisediminis</i>
==Description and significance==
<i>Bacillus oceanisediminis</i> is a rod-shaped aerobic bacterium that is gram-positive and spore-forming (1, 2). <i>B. oceanisediminis</i> was isolated from a sample of sediment from the South Sea in China at a depth of 823 m (2). It is a decomposer which means that it helps clean sediments in the ocean ecosystem and lives in marine sediment. <i>B. oceanisediminis</i> can be found singular and/or in pairs (2). Due to its ability to grow in a temperature range of 4°C-45°C and a pH of 6-10, it can survive in many different environments (1).
==Genome structure==
<i>B. oceanisediminis</i> has a large genome size that is approximately 5.8 Mb (1, 2). It was found that <i>B. oceanisediminis</i> has a larger genome size than most <i>Bacillus</i> species (1). This means that it has the possibility of being very diverse due to its ability to encode a variety of genes. It has a genomic DNA G+C value of 44.8 mol% (2).16S rRNA gene analysis showed that <i>B. oceanisediminis</i> is closely related to <i>Bacillus firmus</i> and <i>Bacillus infantis</i> (2).
==Cell and colony structure==
<i>B. oceanisediminis</i> is a gram-positive bacillus (rod-shaped). It is approximately 2-3µm long (1). It has four major polar lipids that are made up of diphosphatidylglycerol, phosphatidylglycerol, phosphatidylethanolamine, and an aminophospolipid that is unknown (2). Its isoprenoid quinone is MK-7 and there is one major fatty acid which is iso-C (15:0) (2).
==Metabolism==
<i>B. oceanisediminis</i> contains phosphotransferase systems. Phosphotransferase systems are used to obtain different carbon sources. Some carbon sources utilized by <i>B. oceanisediminis</i> include glucose, mannitol, sucrose, maltose, and fructose (1). Fermentation can also occur in <i>B. oceanisediminis</i>. Acetate, ethanol, and lactate are some of the fermentation products that were found in <i>B. oceanisediminis</i> that helps aid in fermentation. Proteins such as copper, cobalt-zinc-cadmium and tellurium resistance proteins were found in <i>B. oceanisediminis</i> to be connected to biomineralization (1). This means that they are able to create minerals.
==Ecology==
<i>B. oceanisediminis</i> can grow at a temperature of 4°C-45°C and has a pH ranging from 6-10 (2). The best growing conditions for this bacterium is 37°C at a pH of 7.0 (1). It is halophilic and can live in various habitats due to its range of growing temperature and pH (1, 2). <i>B. oceanisediminis</i> is positive for oxidase and catalase, which means that it uses oxygen as its main respiration source (2).
==Pathology==
<i>B. oceanisediminis</i> is resistant to aztreonam and was found to be susceptible to many antibiotics such as ampicillin, chloramphenicol, and penicillin G. It is not known whether <i>B. oceanisediminis</i> is pathogenic or non-pathogenic (2).
==References==
1. Lee, Y., Lee, S., Jeong, H., Kim, H., Ryu, N., Kim, B., Lee, H., Lee, D., and Lee, Sang. 2012. <i>Draft Genome Sequence of Bacillus Oceanisediminis 2691.</i> Journal of Bacteriology. Volume 194, 6351-6352.
[doi: 10.1128/JB.01643-12]
2. Zhang, J., Wang, J., Fang, C., Song, F., Xin, Y., Qu, L., and Ding, K. 2010. <i>Bacillus oceanisediminis sp. nov., isolated from marine sediment.</i> International Journal of Systematic and Evolutionary Microbiology. Volume 60, 2924–2929. [doi: 10.1099/ijs.0.019851-0]
Edited by Bouradee Kim of Dr. Lisa R. Moore, University of Southern Maine, Department of Biological Sciences, http://www.usm.maine.edu/bio

Latest revision as of 02:17, 11 December 2015