User:S4338614: Difference between revisions

From MicrobeWiki, the student-edited microbiology resource
Line 17: Line 17:
==Genome structure==
==Genome structure==


Select a strain for which genome information (e.g. size, plasmids, distinct genes, etc.) is available.  
Referring to the complete genome sequence of ''V. parvula'' type strain Te3T, the genome consists of one main circular chromosome comprised of 2,132,142 base pairs with a GC content of 38.6%. 1,920 genes identified in the genome, with 1,859 were protein coding genes, 61 were RNAs and 15 pseudogenes. 73.6% of the genes identified were assigned a putative function whereas the remainders were annotated as hypothetical proteins.


==Cell structure and metabolism==
==Cell structure and metabolism==

Revision as of 06:20, 22 September 2016

Name Bench ID Date [1]

Classification

Higher order taxa

Bacteria; Firmicutes; Negativicutes; Veillonellales; Veillonellaceae; Veillonella

Species

Veillonella parvula

Description and significance

Give a general description of the species (e.g. where/when was it first discovered, where is it commonly found, has it been cultured, functional role, type of bacterium [Gram+/-], morphology, etc.) and explain why it is important to study this microorganism. Examples of citations [1], [2]

Genome structure

Referring to the complete genome sequence of V. parvula type strain Te3T, the genome consists of one main circular chromosome comprised of 2,132,142 base pairs with a GC content of 38.6%. 1,920 genes identified in the genome, with 1,859 were protein coding genes, 61 were RNAs and 15 pseudogenes. 73.6% of the genes identified were assigned a putative function whereas the remainders were annotated as hypothetical proteins.

Cell structure and metabolism

Cell wall, biofilm formation, motility, metabolic functions.

Ecology

Aerobe/anaerobe, habitat (location in the oral cavity, potential other environments) and microbe/host interactions.

Pathology

Do these microorganisms cause disease in the oral cavity or elsewhere?

Application to biotechnology

Bioengineering, biotechnologically relevant enzyme/compound production, drug targets,…

Current research

Summarise some of the most recent discoveries regarding this species.

References

References examples

1. Sahm, K., MacGregor, B.J., Jørgensen, B.B., and Stahl, D.A. (1999) Sulphate reduction and vertical distribution of sulphate-reducing bacteria quantified by rRNA slotblot hybridization in a coastal marine sediment. Environ Microbiol 1: 65-74.

2. Human Oral Microbiome

  1. MICR3004

This page is written by<name> for the MICR3004 course, Semester 2, 2016