Vickie Nguyen and Haylie Beall
Classification
Bacillus subtilis
Domian: Bacteria
Kingdom: Monera
Phylum: Firmicutes
Class: Bacili
Order: Bacillales
Family: Bacillaceae
Genus: Bacillus
Species: B. subtilis
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NCBI: Taxonomy |
History of Bacillus
According to BLAST using a genome sequence from PCR, our organism has been classified as Bacillus subtilis. B. subtilis is one of the most widely researched and most commonly found bacterium used in research. It has been studied to gain insight into bacterial transformation, bacterial growth, and biochemical properties. Today vaccine research is studying B. subtilis in efforts to incorporate the bacterium into a new drug mechanism
Laboratory and Site Collection Data
The organism was isolated from a 10^-3 dilution of soil harvested from a patch of soil in Buda, TX. The soil sample was collected on a sunny afternoon in February 2016. The weather showed low humidity and a temperature of 83 degrees Fahrenheit. The soil dilution was plated on a TSA plate and cultured for one week. Bacterial colonies were transferred to a master patch plate and tested for antibiotic resistance. The organism was chosen based on its antibiotic resistance to S. aureus.
Habitat Information
Bacillus Subtilis is typically found in upper layers of soil but is present in the air, water and plant compost. " The soil bacterium can divide asymmetrically producing an endospore that is resistant to environmental factors such as heat, acid and salt, and can persist in the environment for long period of time. The endospore is formed at times of nutritional stress, allowing the organism to persist in the environment until conditions are favorable,"[1]
Description and Significance
The organism has a colony morphology that is large(up to 2cm), white, rough(blistery with veins), and has irregular borders. There was a clearing surrounding the colony on a test patch plate containing E. coli. We have concluded that it has possible antimicrobial properties against E.coli. Under the microscope, we identified the organism to be gram positive with endospores using gram staining and endospore staining procedures. The organism were arranged in singular rods without a capsule. Because B. subtilis can be found readily in the soil and near grass, its usage of antimicrobial properties may be both practical and effective against S. aureus infections.
Bacillus subtilis is useful in many ways, including industrial applications . Bacillus subtills is also used to produce enzymes including amylase and protease. It is also used in used to produce a variety of antibiotics such as difficidin and oxydifficidin.
Genome Structure
B. subtilis is thought to have a genome containing ~4100 genes. It replicates its genome through natural bacterial transformation where a competent bacterium transfers its double stranded circular DNA to an incompetent bacterium. Below are the forward and reverse sequences obtained from PCR.
Forward: ACGGAGCAACGCCGCGTGAGTGATGAAGG TTTTCGGATCGTAAAGCTCTGTTGTTAGGGAAGAACAAGTACCGTTCGAATAGGGCGGTACCTTGACGGTACCTAACCAG AAAGCCACGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGTGGCAAGCGTTGTCCGGAATTATTGGGCGTAAAGG GCTCGCAGGCGGTTCCTTAAGTCTGATGTGAAAGCCCCCGGCTCAACCGGGGAGGGTCATTGGAAACTGGGGAACTTGAG TGCAGAAGAGGAGAGTGGAATTCCACGTGTAGCGGTGAAATGCGTAGAGATGTGGAGGAACACCAGTGGCGAAGGCGACT CTCTGGTCTGTAACTGACGCTGAGGAGCGAAAGCGTGGGGAGCGAACAGGATTAGATACCCTGGTAGTCCACGCCGTAAA CGATGAGTGCTAAGTGTTAGGGGGTTTCCGCCCCTTAGTGCTGCAGCTAACGCATTAAGCACTCCGCCTGGGGAGTACGG TCGCAAGACTGAAACTCAAAGGAATTGACGGGGGCCCGCACAAGCGGTGGAGCATGTGGTTTAATTCGAAGCAACGCGAA GAACCTTACCAGGTCTTGACATCCTCTGACAATCCTAGAGATAGGACGTCCCCTTCGGGGGCAGAGTGACAGGTGGTGCA TGGTTGTCGTCAGCTCGTGNCGTGA
Reverse:
ACCACCTGTCACTCTGCCCCCGAAGGGGACGTCCTATCTCTAGGATTGTCAGAGGATGTCAAGACCTG
GTAAGGTTCTTCGCGTTGCTTCGAATTAAACCACATGCTCCACCGCTTGTGCGGGCCCCCGTCAATTCCTTTGAGTTTCA
GTCTTGCGACCGTACTCCCCAGGCGGAGTGCTTAATGCGTTAGCTGCAGCACTAAGGGGCGGAAACCCCCTAACACTTAG
CACTCATCGTTTACGGCGTGGACTACCAGGGTATCTAATCCTGTTCGCTCCCCACGCTTTCGCTCCTCAGCGTCAGTTAC
AGACCAGAGAGTCGCCTTCGCCACTGGTGTTCCTCCACATCTCTACGCATTTCACCGCTACACGTGGAATTCCACTCTCC
TCTTCTGCACTCAAGTTCCCCAGTTTCCAATGACCCTCCCCGGTTGAGCCGGGGGCTTTCACATCAGACTTAAGGAACCG
CCTGCGAGCCCTTTACGCCCAATAATTCCGGACAACGCTTGCCACCTACGTATTACCGCGGCTGCTGGCACGTAGTTAGC
CGTGGCTTTCTGGTTAGGTACCGTCAAGGTACCGCCCTATTCGAACGGTACTTGTTCTTCCCTAACAACAGAGCTTTACG
ATCCGAAAACCTTCATCACTCACGCGGCGTTGCTCCGTCAGACTTTCGTCCATTGCGGAAGA
Cell Structure, Metabolism and Life Cycle
Under the microscope, we identified the organism to be gram positive with endospores using gram staining and endospore staining procedures. The organism were arranged in singular rods without a capsule. B. subtilis can be found readily in the soil and near grass, and we suspect thatit will have a long life cycle due to resilient heat resistant spores to carry on its genetic material. That being said, B. subtilis can also reproduce via binary fission.
Physiology and Pathogenesis
According to the biochemical reactions listed below, our organism is motile with the capabilities of fermenting Glucose and Sucrose. It causes a neutral reaction in the MRVP test and is capable of lipid hydrolysis. It is also positive for citrate and nitrate reduction. Other biochemical tests, listed below, show that the organism is gram (+), salt tolerant, and not capable of lactose fermentation. The decarboxylation test shows that it had (+) fermentation for Arginine, Ornithine, and Lysine. In blood agar, it is capable of partial hemolysis, and is also (+) for esculin hydrolysis. Subjection to disinfectants revealed that it is sensitive to Lysol and clove but resistant to isopropyl alcohol and bleach. Fortunately, B. subtilis is not known to cause disease.
Motility: yes
Phenol Red Broth:
Glucose: Yellow, no gas, (+) fermentation
Lactose: Pink, no gas, (-) fermentation
Sucrose: Yellow, no gas, (+) fermentation
Starch Hydrolysis: iodine turns black, (-)
Casein Hydrolysis: skim milk agar, no clearing, (-)
DNA Hydrolysis: (-)
Lipid Hydrolysis (Tributyrin): clearing in agar, (+)
Methyl Red: unchanged (-)
Voges Proskauer: red (+)
Citrate Test: blue/green (+)
SIM Tests: (-) motility, (-) indole
Nitrate Reduction: Red after adding Reagents A + B, (+) nitrate to nitrite
Urea Hydrolysis: no change, (-) Urea hydrolysis
Triple Sugar Iron: orange/pink, (-) fermentation of lactose, sucrose, and glucose
Oxidase: no change, (-)
EMB Agar: no growth, Gram (+), fermentation (-)
Hektoen Enteric Agar: no growth, Gram (+), lactose fermentation (-)
MacConkey Agar: no growth, Gram (+), lactose fermentation (-)
Decarboxylation: yellow, (-) decarboxylation and (+) fermentation for Arginine, Lysine, and Ornithine
Phenylalanine Deaminase : no change (-) fermentation
Catalase: no bubbles (-)
Blood Agar: green clearing, partial hemolysis
Mannitol Salt Agar: pink, growth, (-) mannitol fermenation, salt tolerant gram (+)
Phenylethyl Alcohol: growth, gram (+)
Salt broth: fine uniform turbidity, (+) salt tolerance
No growth on the Bacitracin/Optichin blood agar plate
Bile esculin: dark brown, (+) esculin hydrolysis and salt tolerance
Disinfectant Clove: sensitive
Disinfectant 10% Lysol: sensitive
Disinfectant 100% Lysol: sensitive
Disinfectant Bleach: resistant
Disinfectant Isopropyl Alcohol: resistant
References
[1] -Amuguni, Hellen, and Saul Tzipori. “Bacillus Subtilis: A Temperature Resistant and Needle Free Delivery System of Immunogens.” Human Vaccines & Immunotherapeutics 8.7 (2012): 979–986. PMC. Web.
[2] - Bauman, Robert W. Microbiology: With Diseases by Body System. Print.
[3] - Leboffe, Michael J., and Burton E. Pierce. Microbiology: Laboratory Theory & Application. Print.
[4] - National Center for Biotechnology Information."Summary." U.S. National Library of Medicine. Web.
Author
Page authored by Vickie Nguyen and Haylie Beall, students of Prof. Kristine Hollingsworth at Austin Community College.
