Yellowstone Acid Pools: Difference between revisions

From MicrobeWiki, the student-edited microbiology resource
Line 40: Line 40:


==Biotechnology==
==Biotechnology==


==Current Research==
==Current Research==

Revision as of 00:16, 28 August 2008

Template:Biorealm Niche

This template is a general guideline of how to design your site. You are not restricted to this format, so feel free to make changes to the headings and subheadings and to add additional sections as appropriate.


Description of Niche

Introduction

Location

Physical Conditions

This thermoacidophilic niche is typically located in aquatic environments with high moisture content, including various geothermal hot springs and volcanic mud pools. The niche is adapted to highly acidic environments, generally with a pH of less than 3. Due to active volcanic activities in the area, the springs and pools in which the acidophilic niche is found are typically of fairly high temperature, usually ranging from 65 to 90 degrees Celsius. The niche is typically immersed in pools with high sulfur contents, either as hydrogen sulfide (H2S(g)) emitted as a volcanic gas, or as elemental sulfur crystals. Some niches are also found in pools rich with other metals, typically iron (1).

Influence by Adjacent Communities (if any)

Is your niche close to another niche or influenced by another community of organisms?

Conditions under which the environment changes

Do any of the physical conditions change? Are there chemicals, other organisms, nutrients, etc. that might change the community of your niche.

Who lives there?

Which microbes are present?

You may refer to organisms by genus or by genus and species, depending upon how detailed the your information might be. If there is already a microbewiki page describing that organism, make a link to it.

Presence of Non-microbe

Most archaea are thermophiles, meaning they thrive on extremely hot and acidic conditions like those in Yellowstone Park acid pools. And like most living things, archaea have viruses that can replicate within them. Studies have shown that lysogenic viruses thrive on the Sulfolobus bacteria whose ability to tolerate hot and acidic conditions makes them a hospitable host.

Plants? Animals? Fungi? etc.

Do the microbes that are present interact with each other?

Describe any negative (competition) or positive (symbiosis) behavior

Do the microbes change their environment?

Do they alter pH, attach to surfaces, secrete anything, etc. etc.

Do the microbes carry out any metabolism that affects their environment?

Do they ferment sugars to produce acid, break down large molecules, fix nitrogen, etc. etc.

Biotechnology

Current Research

Enter summaries of the most recent research. You may find it more appropriate to include this as a subsection under several of your other sections rather than separately here at the end. You should include at least FOUR topics of research and summarize each in terms of the question being asked, the results so far, and the topics for future study. (more will be expected from larger groups than from smaller groups)

Viral phage as mobile genetic material

The diversity of Sulfolobus spindled-shaped viruses (SSVs) and Sulfolobus islandicus rod-shaped viruses (SIRVs), which are virus types that are genus-specific for Yellowstone-dwelling sulfolobus species, was monitored over a 2-year period of time. Comparison of amplified viral DNA sequences indicated that viral movement and immigration, rather than mutation, contributes to the high local population diversity even though the viral host sulfolobus is confined within specific geographic barriers (different thermoacidic pools). This result is significant as SSVs and SIRVs exhibit physical structures similar to that of bacteriophages and human viral pathogens. Researching of this rapid viral movement can provide significant information regarding virus circulation as well as the potential use of the viruses as mobile genetic material (3).

References

1. TD. Brock, Km Brock, RT. Belly and RL. Weiss. "Sulfolobus: A new genus of sulfur-oxidizing bacteria living at low pH and high temperature." Archives of Microbiology (1972) 84:54-68

2. J Mathur, RW. Bizzoco, DG. Ellis, DA. Lipson. “Effects of abiotic factors on the phylogenetic diversity of bacterial communities in acidic thermal springs.” Applied and Environmental Microbiology (2007) 2612-2623

3. Snyder, B. Wiedenheft, M. Lavin, FF. Roberto. “Virus movement maintains local virus population diversity.” Proceedings of the National Academy of Sciences of the United States of America (2007) 104:19102-19107

Edited by [Weiqin Fang, Ka Kong, Chasen Mock, and Shin Trieu], students of Rachel Larsen