Acetobacterium woodii: Difference between revisions

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==Classification==
==Classification==
[[File:Screen_Shot_2014-04-16_at_12.02.36_PM.png|thumb|600px|right|'' Phase-contrast photomicrograph showing the common pairing of Acetobacterium woodii. (Balch, W. E., et al., 1977)]]


Domain: Bacteria
Domain: Bacteria
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Acetobacterium woodii
''Acetobacterium woodii''
 
''Acetum'' (vinegar) + ''bakterion'' (small rod) = ''Acetobacterium'' (vinegar rod)


Isolated from black sediment of Oyster Pond inlet, Woods Hole, MA, USA. Named in honor of Harland G. Wood – An American Biochemist who pioneered studies which proved animals, humans, and bacteria use carbon dioxide in their metabolism. Wood studies proved that carbon dioxide can be used for the complete synthesis of acetate in bacteria.
Isolated from black sediment of Oyster Pond inlet, Woods Hole, MA, USA. Named in honor of Harland G. Wood – An American Biochemist who pioneered studies which proved animals, humans, and bacteria use carbon dioxide in their metabolism. Wood studies proved that carbon dioxide can be used for the complete synthesis of acetate in bacteria.


==Description and Significance==
==Description and Significance==
[[File:Screen_Shot_2014-04-16_at_12.08.55_PM.png|thumb|600px|right|''Electron micrograph depicting a single flagellum. Characteristic of the oval-shaped cells of Acetobacterium woodii. (Balch, W. E., et al., 1977)]]
''Acetobacterium woodii'' is an anaerobic, non spore-forming, gram-positive, rod-shaped acetogenic bacterium that usually occurs in pairs. Motility is facilitated by one subterminal flagellum, and infrequently exhibits two flagella.
Anaerobic metabolism produces acetate as a by-product through homoacetogenic fermentation. Meaning it produces acetate exclusively, unlike heteroacetogenic fermentative microorganisms which can produce other by-products along with acetate.
The specificity of this microorganisms metabolism has potential industrial applications. Approximately 2 million tons of acetic acid are produced every year with aerobic acetic acid bacteria. ''A. woodii'' has the ability to produce acetate anaerobically at a 50% increase in yield compared to aerobic bacteria. This can be achieved through over-expression of certain enzymes in the acetyl-CoA pathway. Utilizing only H<sub>2</sub> gas and CO<sub>2</sub>, ''A. woodii'' could be a more economical alternative to current biotechnological processes.


Acetobacterium woodii is an anaerobic gram-positive rod-shaped acetogenic bacterium. Uses one subterminal flagellum for motility, and in rare cases, has exhibited two flagella.
Recent research into microbial fuel cells (MFCs) and their application as a renewable energy source consist of various schemes for building a self reliant "battery". Some schemes require acetate producing microorganisms. As a homoacetogenic organism, ''A. woodi'' would be an ideal candidate for these schemes.
Oyster Pond, from which isolation of Acetobacterium woodii was achieved, has some a defining characteristic that sets it apart from most other habitats. Oyster pond started as an ocean inlet, with high salinity (~32 ppt). Gradually, storms caused a sandbar to form at the entrance to the inlet, which later was completely closed off from the ocean to make way for a set of train tracks. This caused the salinity levels to drop. Later, a weir was installed to regulate the pond's salinity between 2-4 ppt.
A. woodii has dependence on Na+ ions for metabolization of various substrates. Oyster pond's unique levels of salinity may provide an environment better suited for growth of A. woodii than normal freshwater (< 0.5 ppt) and saltwater (~35 ppt) bodies.
A. woodii produces acetate through homoacetogenic fermentation. The specificity of this microorganisms metabolism has potential industrial applications.
Approximately 5 billion kg of acetic acid are produced annually in industry. A. woodii has the ability to provide sustainable production of these fuels and chemicals. While it mayUtilizing only H<sub>2</sub> gas and CO<sub>2</sub>, A. woodii could be the solution to a more economical and even environmentally friendly solution to an enormous output of acetic acid.


==Genome Structure==
==Genome Structure==


Describe the size and content of the genome.  How many chromosomes?  A. woodii has a circular DNA with 4,044,777 bp. The density and G+C content was studied using batches containing fructose and H<sub>2</sub>-CO<sub>2</sub> medias. The buoyant density was determined to be 1.699 g/cm<sup>3</sup> and the G+C content was 39 mol%. A. woodii has 2,889 proteins within its matrix and the average protein length is 330.5 amino acids.   Other interesting features?  What is known about its sequence?
''A. woodii'' has circular DNA with 4,044,777 bp.  
 
The density and G+C content was studied using batches containing fructose and H<sub>2</sub>-CO<sub>2</sub> medias. The buoyant density was determined to be 1.699 g/cm<sup>3</sup> and the G+C content was 39 mol%.  
 
The proteome consists of 3,473 protein genes with the average protein length of 330.5 amino acids.


==Cell Structure, Metabolism and Life Cycle==
==Cell Structure, Metabolism and Life Cycle==
Interesting features of cell structure; how it gains energy; what important molecules it produces.


Grows optimally at 30 degree C in 6 hours under a 80:20 mixture H<sub>2</sub>-CO<sub>2</sub>.
Research into the infrastructure of ''A. woodii'' showed a rare type of peptidoglycan of the cross-linking group-B. Only one other microorganism is known to have a similar murein structure; ''Butyribacterium rettgeri'' (syn. ''Eubacterium limosum''). There is one difference between the two mureins: ''B. rettgeri'' exhibits an incomplete replacement of D-ornithine by D-lysine. With both microorganisms belonging to the same family Eubacteriaceae, utilizing similar metabolisms, and also exhibiting nearly identical peptidoglycan structure, ''A. woodii'' and ''Eubacterium limosum'' may be more closely related than previously thought. The peptidoglycan structure of ''A. woodii'' makes up 55% of the dry weight of the cell walls.
H<sub>2</sub>  serves as the electron donor and is oxidized while CO<sub>2</sub> serves as the electron acceptor and is reduced to form acetate
 
2 CO<sub>2</sub> + 4 H<sub>2</sub> -> CH<sub>3</sub>COOH + 2 H<sub>2</sub>O
Growth is optimal at 30&deg;C with a generation time of 6 hours under a 80:20 mixture H<sub>2</sub>-CO<sub>2</sub>. Most culture medias prepared with pH close to neutral (~6.8). Production of acetic acid causes pH to drop, however A. woodii was observed to still be viable at pH 5 for weeks in a sealed culture.
 
H<sub>2</sub>  serves as the electron donor and is oxidized while CO<sub>2</sub> serves as the electron acceptor and is reduced to form acetate (syn. acetic acid) through a homoacetogenic fermentation:
 
2 CO<sub>2</sub> + 4 H<sub>2</sub> -> CH<sub>3</sub>COOH + 2 H<sub>2</sub>O       ΔG= -25.6 J/mol
 
This metabolic pathway is termed the acetyl-CoA pathway. Also known as the Wood–Ljungdahl pathway, after the researchers who pieced together the process.


A. woodii can use other substrates than H<sub>2</sub> however the range of substrates is narrow and limited to fructose, glucose, lactate, glycerate, and formate. When the other substrates are used there a slight production of succinate was detected. The co-enzyme Pantothenate is required as a growth factor. Can also grow with CO as the sole energy source.
''A. woodii'' can use substrates other than H<sub>2</sub>, however the range of substrates is narrow and limited to fructose, glucose, lactate, glycerate, and formate; CO can also serve as a substrate. When the other substrates are used slight production of succinate can be detected. The vitamin calcium pantothenate and high bicarbonate concentrations are required for growth.


==Ecology and Pathogenesis==
==Ecology and Pathogenesis==
Habitat; symbiosis; biogeochemical significance; contributions to environment.<br>
[[File:Screen_Shot_2014-04-16_at_3.15.34_PM.png‎|thumb|600px|right|'' Oyster Pond Inlet, Woods Hole, Mass. where Acetobacterium woodii was isolated from. (Courtesy of Google maps)]]
If relevant, how does this organism cause disease? Human, animal, plant hosts? Virulence factors, as well as patient symptoms.<br><br>
 
Oyster Pond, from which isolation of ''Acetobacterium woodii'' was achieved, has some defining characteristics that sets it apart from most other habitats. Oyster pond started as an ocean inlet, with high salinity (~32 ppt). Gradually, storms caused a sandbar to form at the entrance to the inlet, which later was completely closed off from the ocean to allow the building of train tracks. This caused the salinity levels to drop. A weir was then installed to regulate the pond's salinity (between 2-4 ppt).  


Acetobacterium woodii may be present in ruminant animals and hindgut fermentation chambers of organisms. Examples of some animals that benefit from its presence are: cattle, goats, sheep, buffalo, termites, scarab beetles, cockroaches, and crickets. These hosts benefit from the production of acetate which supplements their nutrition.  
''A. woodii'' has a dependence on Na<sup>+</sup> ions for metabolization of various substrates. Oyster pond's unique levels of salinity may provide an environment better suited for growth of ''A. woodii'' than normal freshwater (< 0.5 ppt) and saltwater (~35 ppt) bodies.


Symbiosis with methanogens in rumen/hindgut?
Acetogens dominate in many species of termites over methanogens. However, in other communities, methanogenic organisms out-compete acetogenic organisms for H<sub>2</sub> due to a higher threshold for hydrogen gas. In addition, some methanogens can metabolize acetate, the homoacetogenic fermentation end-product of ''A. woodii''. This may help regulate acetate concentrations and therefore pH levels in certain microbial communities.
Acetogenesis dominate in many species of termites over methanogenesis. Methanogenic organisms compete with Acetogenic organisms for H<sub>2</sub> in closed systems therefore Methanogens must be inhibited to determine growth of Acetogenic organisms and acetate production


Acetobacterium woodii is not pathogenic to humans.
''Acetobacterium woodii'' is not pathogenic to humans or animals. Although isolated from pond sediment, it is possible the species ''A. woodii'' may be present in ruminant chambers of some organisms. Acetogens like ''A. woodii'' that are present could provide "methane mitigation" through therapeutic feeding strategies in ruminant animals. Selecting for acetogens to outcompete methanogens for H<sub>2</sub> in ruminant lifestock has been proposed as a preventative strategy in Australia and New Zealand.


==References==
==References==
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Heise, R., et al. (1989). Sodium dependence of acetate formation by the acetogenic bacterium acetobacterium woodii. JOURNAL OF BACTERIOLOGY, 171(10), 5473-5478. Retrieved from http://www.ncbi.nlm.nih.gov/pmc/articles/PMC210386/pdf/jbacter00176-0247.pdf
Heise, R., et al. (1989). Sodium dependence of acetate formation by the acetogenic bacterium acetobacterium woodii. JOURNAL OF BACTERIOLOGY, 171(10), 5473-5478. Retrieved from http://www.ncbi.nlm.nih.gov/pmc/articles/PMC210386/pdf/jbacter00176-0247.pdf
Joblin, K. (1999). Ruminal acetogens and their potential to lower ruminant methane emissions. [online] Crop & Pasture Science. Available at: http://www.publish.csiro.au/paper/AR99004.htm [Accessed 24 Apr. 2014].


Kandler, O. and Schoberth, S., 1979. Murein structure of Acetobacterium woodii. Archives of Microbiology, [online] 120(2), pp.181-183. Available at: <http://link.springer.com/article/10.1007%2FBF00409106#page-1> [Accessed 20 Apr. 2014].
Kandler, O. and Schoberth, S., 1979. Murein structure of Acetobacterium woodii. Archives of Microbiology, [online] 120(2), pp.181-183. Available at: <http://link.springer.com/article/10.1007%2FBF00409106#page-1> [Accessed 20 Apr. 2014].
Line 77: Line 93:
Poehlein, A., et al. (2011, July). Acetobacterium woodii (strain ATCC 29683 / DSM 1030 / JCM 2381 / KCTC 1655). Retrieved from http://hamap.expasy.org/proteomes/ACEWD.html
Poehlein, A., et al. (2011, July). Acetobacterium woodii (strain ATCC 29683 / DSM 1030 / JCM 2381 / KCTC 1655). Retrieved from http://hamap.expasy.org/proteomes/ACEWD.html


Straub, M., 2014. Selective enhancement of autotrophic acetate production with genetically modified Acetobacterium woodii. [online] Sciencedirect.com. Available at: <http://www.sciencedirect.com/science/article/pii/S0168165614001084> [Accessed 20 Apr. 2014].
Spormann, A., et al. (2014). GCEP Research » Blog Archive » Capturing Electrical Current via Microbes to Produce Methane. [online] Stanford.edu. Available at: http://www.stanford.edu/group/gcep/cgi-bin/gcep-research/all/capturing-electrical-current-via-microbes-to-produce-methane/ [Accessed 22 Apr. 2014].
 
Straub, M., et al. 2014. Selective enhancement of autotrophic acetate production with genetically modified Acetobacterium woodii. [online] Sciencedirect.com. Available at: <http://www.sciencedirect.com/science/article/pii/S0168165614001084> [Accessed 20 Apr. 2014].


==Author==
==Author==

Latest revision as of 17:12, 25 April 2014

This student page has not been curated.

Classification

Phase-contrast photomicrograph showing the common pairing of Acetobacterium woodii. (Balch, W. E., et al., 1977)

Domain: Bacteria

Phylum: Firmicutes

Class: Clostridia

Order: Clostridiales

Family: Eubacteriaceae

Species

NCBI: Taxonomy

Acetobacterium woodii

Acetum (vinegar) + bakterion (small rod) = Acetobacterium (vinegar rod)

Isolated from black sediment of Oyster Pond inlet, Woods Hole, MA, USA. Named in honor of Harland G. Wood – An American Biochemist who pioneered studies which proved animals, humans, and bacteria use carbon dioxide in their metabolism. Wood studies proved that carbon dioxide can be used for the complete synthesis of acetate in bacteria.

Description and Significance

Electron micrograph depicting a single flagellum. Characteristic of the oval-shaped cells of Acetobacterium woodii. (Balch, W. E., et al., 1977)

Acetobacterium woodii is an anaerobic, non spore-forming, gram-positive, rod-shaped acetogenic bacterium that usually occurs in pairs. Motility is facilitated by one subterminal flagellum, and infrequently exhibits two flagella. Anaerobic metabolism produces acetate as a by-product through homoacetogenic fermentation. Meaning it produces acetate exclusively, unlike heteroacetogenic fermentative microorganisms which can produce other by-products along with acetate.

The specificity of this microorganisms metabolism has potential industrial applications. Approximately 2 million tons of acetic acid are produced every year with aerobic acetic acid bacteria. A. woodii has the ability to produce acetate anaerobically at a 50% increase in yield compared to aerobic bacteria. This can be achieved through over-expression of certain enzymes in the acetyl-CoA pathway. Utilizing only H2 gas and CO2, A. woodii could be a more economical alternative to current biotechnological processes.

Recent research into microbial fuel cells (MFCs) and their application as a renewable energy source consist of various schemes for building a self reliant "battery". Some schemes require acetate producing microorganisms. As a homoacetogenic organism, A. woodi would be an ideal candidate for these schemes.

Genome Structure

A. woodii has circular DNA with 4,044,777 bp.

The density and G+C content was studied using batches containing fructose and H2-CO2 medias. The buoyant density was determined to be 1.699 g/cm3 and the G+C content was 39 mol%.

The proteome consists of 3,473 protein genes with the average protein length of 330.5 amino acids.

Cell Structure, Metabolism and Life Cycle

Research into the infrastructure of A. woodii showed a rare type of peptidoglycan of the cross-linking group-B. Only one other microorganism is known to have a similar murein structure; Butyribacterium rettgeri (syn. Eubacterium limosum). There is one difference between the two mureins: B. rettgeri exhibits an incomplete replacement of D-ornithine by D-lysine. With both microorganisms belonging to the same family Eubacteriaceae, utilizing similar metabolisms, and also exhibiting nearly identical peptidoglycan structure, A. woodii and Eubacterium limosum may be more closely related than previously thought. The peptidoglycan structure of A. woodii makes up 55% of the dry weight of the cell walls.

Growth is optimal at 30°C with a generation time of 6 hours under a 80:20 mixture H2-CO2. Most culture medias prepared with pH close to neutral (~6.8). Production of acetic acid causes pH to drop, however A. woodii was observed to still be viable at pH 5 for weeks in a sealed culture.

H2 serves as the electron donor and is oxidized while CO2 serves as the electron acceptor and is reduced to form acetate (syn. acetic acid) through a homoacetogenic fermentation:

2 CO2 + 4 H2 -> CH3COOH + 2 H2O ΔG= -25.6 J/mol

This metabolic pathway is termed the acetyl-CoA pathway. Also known as the Wood–Ljungdahl pathway, after the researchers who pieced together the process.

A. woodii can use substrates other than H2, however the range of substrates is narrow and limited to fructose, glucose, lactate, glycerate, and formate; CO can also serve as a substrate. When the other substrates are used slight production of succinate can be detected. The vitamin calcium pantothenate and high bicarbonate concentrations are required for growth.

Ecology and Pathogenesis

Oyster Pond Inlet, Woods Hole, Mass. where Acetobacterium woodii was isolated from. (Courtesy of Google maps)

Oyster Pond, from which isolation of Acetobacterium woodii was achieved, has some defining characteristics that sets it apart from most other habitats. Oyster pond started as an ocean inlet, with high salinity (~32 ppt). Gradually, storms caused a sandbar to form at the entrance to the inlet, which later was completely closed off from the ocean to allow the building of train tracks. This caused the salinity levels to drop. A weir was then installed to regulate the pond's salinity (between 2-4 ppt).

A. woodii has a dependence on Na+ ions for metabolization of various substrates. Oyster pond's unique levels of salinity may provide an environment better suited for growth of A. woodii than normal freshwater (< 0.5 ppt) and saltwater (~35 ppt) bodies.

Acetogens dominate in many species of termites over methanogens. However, in other communities, methanogenic organisms out-compete acetogenic organisms for H2 due to a higher threshold for hydrogen gas. In addition, some methanogens can metabolize acetate, the homoacetogenic fermentation end-product of A. woodii. This may help regulate acetate concentrations and therefore pH levels in certain microbial communities.

Acetobacterium woodii is not pathogenic to humans or animals. Although isolated from pond sediment, it is possible the species A. woodii may be present in ruminant chambers of some organisms. Acetogens like A. woodii that are present could provide "methane mitigation" through therapeutic feeding strategies in ruminant animals. Selecting for acetogens to outcompete methanogens for H2 in ruminant lifestock has been proposed as a preventative strategy in Australia and New Zealand.

References

Acetate. 2014. [online] Wikipedia. Available at: <http://en.wikipedia.org/wiki/Acetate> [Accessed 20 Apr. 2014].

Acetobacterium woodii (strain ATCC 29683 / DSM 1030 / JCM 2381 / KCTC 1655). 2014. [online] Omabrowser.org. Available at: <http://omabrowser.org/cgi-bin/gateway.pl?f=DisplayOS&p1=ACEWD> [Accessed 20 Apr. 2014].

Balch, W. E., et al. (1977). Acetobacterium, a new genus of hydrogen-oxidizing, carbon dioxide-reducing, anaerobic bacteria. INTERNATIONAL JOURNAL OF SYSTEMATIC BACTERIOLOGY, 27(4), 355-361. Retrieved from http://ijs.sgmjournals.org/content/27/4/355.full.pdf

B R Sharak Genthner, M., 1987. Additional characteristics of one-carbon-compound utilization by Eubacterium limosum and Acetobacterium woodii. Applied and Environmental Microbiology, [online] 53(3), p.471. Available at: <http://www.ncbi.nlm.nih.gov/pmc/articles/PMC203690/?page=1> [Accessed 20 Apr. 2014].

Eden, G. and Fuchs, G., 1983. Autotrophic CO2 fixation in Acetobacterium woodii. Archives of Microbiology, [online] 135(1), pp.68-73. Available at: <http://link.springer.com/article/10.1007%2FBF00419485#page-1> [Accessed 20 Apr. 2014].

Heise, R., et al. (1989). Sodium dependence of acetate formation by the acetogenic bacterium acetobacterium woodii. JOURNAL OF BACTERIOLOGY, 171(10), 5473-5478. Retrieved from http://www.ncbi.nlm.nih.gov/pmc/articles/PMC210386/pdf/jbacter00176-0247.pdf

Joblin, K. (1999). Ruminal acetogens and their potential to lower ruminant methane emissions. [online] Crop & Pasture Science. Available at: http://www.publish.csiro.au/paper/AR99004.htm [Accessed 24 Apr. 2014].

Kandler, O. and Schoberth, S., 1979. Murein structure of Acetobacterium woodii. Archives of Microbiology, [online] 120(2), pp.181-183. Available at: <http://link.springer.com/article/10.1007%2FBF00409106#page-1> [Accessed 20 Apr. 2014].

Kresge, N., Simoni, R. and Hill, R., 2005. The Discovery of Heterotrophic Carbon Dioxide Fixation by Harland G. Wood. Journal of Biological Chemistry, [online] 280(18), pp.e15-e15. Available at: <http://www.jbc.org/content/280/18/e15.full.pdf+html> [Accessed 20 Apr. 2014].

Oyster Pond Environmental Trust, Inc. 2014. [online] Opet.org. Available at: <http://www.opet.org/facts.html> [Accessed 20 Apr. 2014].

Poehlein, A., et al. (2011, July). Acetobacterium woodii (strain ATCC 29683 / DSM 1030 / JCM 2381 / KCTC 1655). Retrieved from http://hamap.expasy.org/proteomes/ACEWD.html

Spormann, A., et al. (2014). GCEP Research » Blog Archive » Capturing Electrical Current via Microbes to Produce Methane. [online] Stanford.edu. Available at: http://www.stanford.edu/group/gcep/cgi-bin/gcep-research/all/capturing-electrical-current-via-microbes-to-produce-methane/ [Accessed 22 Apr. 2014].

Straub, M., et al. 2014. Selective enhancement of autotrophic acetate production with genetically modified Acetobacterium woodii. [online] Sciencedirect.com. Available at: <http://www.sciencedirect.com/science/article/pii/S0168165614001084> [Accessed 20 Apr. 2014].

Author

Page authored by Jacob Bryde and Tim Stieve, students of Drs. Kaz Kashefi and Edward Walker at Michigan State University.

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