Photobacterium leiognathi: Difference between revisions

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*** '''''Synechococcus'''''<br />
*** '''''Synechococcus'''''<br />
** '''Nostocales'''
** '''Nostocales'''
*** '''''Anabaena'''''
*** '''''[https://internal.kenyon.edu/mediawiki-1.6.6/index.php/Anabaena Anabaena]'''''
*** ''''' Nostoc'''''
*** '''''Nostoc'''''
** '''Oscillatoriales'''
** '''Oscillatoriales'''
*** '''''Spirulina'''''
*** '''''Spirulina'''''
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*** '''''Prochlorococcus'''''
*** '''''Prochlorococcus'''''
*** '''''Prochloron'''''
*** '''''Prochloron'''''
* '''Firmicutes (Gram positive)'''
* <font size="3">'''Firmicutes (Gram positive)'''</font>
** '''Bacillales'''
** '''Bacillales'''
*** '''''Bacillus'''''
*** '''''[https://internal.kenyon.edu/mediawiki-1.6.6/index.php/Bacillus Bacillus]'''''
*** '''''Listeria'''''
*** '''''Listeria'''''
*** '''''Staphylococcus'''''
*** '''''Staphylococcus'''''
** '''Clostridiales'''
** '''Clostridiales'''
*** '''''Clostridium'''''
*** '''''[https://internal.kenyon.edu/mediawiki-1.6.6/index.php/Clostridium Clostridium]'''''
*** '''''Dehalobacter'''''
*** '''''[https://internal.kenyon.edu/mediawiki-1.6.6/index.php/Dehalobacter Dehalobacter]'''''
*** '''''Epulopiscium'''''
*** '''''[https://internal.kenyon.edu/mediawiki-1.6.6/index.php/Epulopiscium Epulopiscium]'''''
*** '''''Ruminococcus<br />'''''
*** '''''Ruminococcus<br />'''''
** '''Lactobacillales'''
** '''Lactobacillales'''
*** '''''Enterococcus'''''
*** '''''[https://internal.kenyon.edu/mediawiki-1.6.6/index.php/Enterococcus Enterococcus]'''''
*** '''''Lactobacillus'''''
*** '''''Lactobacillus'''''
*** '''''Streptococcus'''''
*** '''''Streptococcus'''''
** '''Mollicutes'''
** '''Mollicutes'''
*** '''''Mycoplasma'''''<br /><br />
*** '''''[https://internal.kenyon.edu/mediawiki-1.6.6/index.php/Mycoplasma Mycoplasma]'''''<br /><br />
* '''Nitrospirae'''
* <font size="3">'''Nitrospirae'''</font>
** '''Nitrospirales'''
** '''Nitrospirales'''
*** '''''Leptospirillum'''''
*** '''''Leptospirillum'''''
*** '''''Nitrospira'''''
*** '''''Nitrospira'''''
*** '''''Thermodesulfo-bacterium'' '''
*** '''''Thermodesulfo-bacterium'' '''
* '''Planctomycetes'''
* <font size="3">'''Planctomycetes'''</font>
** '''Planctomycetales'''
** '''Planctomycetales'''
*** '''''Gemmata'''''
*** '''''[https://internal.kenyon.edu/mediawiki-1.6.6/index.php/Gemmata Gemmata]'''''
*** '''''Pirellula'''''
*** '''''Pirellula'''''
*** '''''Planctomyces''<br />'''
*** '''''Planctomyces''<br />'''
* '''Proteobacteria (Alpha)'''
* <font size="3">'''Proteobacteria (Alpha)'''</font>
** '''Caulobacterales'''
** '''Caulobacterales'''
*** '''''Caulobacter'''''
*** '''''[https://internal.kenyon.edu/mediawiki-1.6.6/index.php/Caulobacter Caulobacter]'''''
** '''Rhizobiales'''
** '''Rhizobiales'''
*** '''''Agrobacterium'''''
*** '''''[https://internal.kenyon.edu/mediawiki-1.6.6/index.php/Agrobacterium Agrobacterium]'''''
*** '''''Bradyrhizobium'''''
*** '''''[https://internal.kenyon.edu/mediawiki-1.6.6/index.php/Bradyrhizobium Bradyrhizobium]'''''
*** '''''Brucella'''''
*** '''''[https://internal.kenyon.edu/mediawiki-1.6.6/index.php/Brucella Brucella]'''''
*** '''''Methylobacterium'''''
*** '''''[https://internal.kenyon.edu/mediawiki-1.6.6/index.php/Methylobacterium Methylobacterium]'''''
*** '''''Prosthecomicrobium'''''
*** '''''Prosthecomicrobium'''''
*** '''''Rhizobium'''''
*** '''''Rhizobium'''''
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*** '''''Wolbachia'''''<br />
*** '''''Wolbachia'''''<br />
** '''Sphingomonadales'''
** '''Sphingomonadales'''
*** '''''Erythrobacter'''''
*** '''''[https://internal.kenyon.edu/mediawiki-1.6.6/index.php/Erythrobacter Erythrobacter]'''''
*** '''''Erythromicrobium'''''
*** '''''[https://internal.kenyon.edu/mediawiki-1.6.6/index.php/Erythromicrobium Erythromicrobium]'''''
*** '''''Sphingomonas<br />'''''
*** '''''Sphingomonas<br />'''''
* '''Proteobacteria (Beta)'''
* <font size="3">'''Proteobacteria (Beta)'''</font>
** '''Burkholderiales'''
** '''Burkholderiales'''
*** '''''Alcaligenes'''''
*** '''''Alcaligenes'''''

Revision as of 14:49, 7 June 2006

The Microbial Biorealm


Phylo domains home.gif

A Microbial Diversity Resource



Student Authors: Ryotaro Tashiro '09, Molly Schlemmer '08, Shrochis Karki '09, Allison Whipple '06, Zeva Levine (Beloit), Laura Damon-Moore (Beloit), Ariel Kahrl (Oberlin), Hannah Sacks '08, Michael Stulberg '05, Casey M. Smith '06, and Shana Scogin '07
Advisor: Joan Slonczewski, Biology Dept.
Funding: HHMI awards to Kenyon College, 2000, 2004

Review: Focus on Microbiology Education, Jennifer L. Taylor, authors. Licensed for use, ASM MicrobeLibrary

Recommended Sites: NCBI Taxonomy, NCBI Microbial Genomes, The Prokaryotes: An Evolving Electronic Resource, LBSN List of Bacterial Names, MB409 Microbial Diversity, Science, <font PNAS, ASM Journals, Nature

Copyright notice. Readers may view, browse, and/or download material for noncommercial personal purposes. Please credit our site for use. Materials on our site obtained with permission from other sources require permission from those sources for further reproduction.

Disclaimer. Information on this site is provided solely for educational purposes. Medical questions should be referred to a physician.



Microbial Phylogeny

Within each Domain these ranks are shown: Division, Order, Genus. Links provide full taxonomy and description.

Bacteria

Archaea

Eukarya

  • Cyanobacteria
    • Chloroplast
    • Chroococcales
    • Nostocales
    • Oscillatoriales
      • Spirulina
      • Trichodesmium
    • Pleurocapsales
      • Pleurocapsa
    • Prochlorophytes
      • Prochlorococcus
      • Prochloron
  • Firmicutes (Gram positive)
  • Nitrospirae
    • Nitrospirales
      • Leptospirillum
      • Nitrospira
      • Thermodesulfo-bacterium
  • Planctomycetes
    • Planctomycetales
  • Proteobacteria (Alpha)
  • Proteobacteria (Beta)
    • Burkholderiales
      • Alcaligenes
      • Burkholderia
      • Leptothrix
      • Sphaerotilus
    • Hydrogenophilales
      • Thiobacillus
    • Neisseriales
      • Neisseria
    • Nitrosomonadales
      • Nitrosomonas
      • Gallionella
      • Spirillum
    • 'Rhodocyclales'
      • Azoarcus
  • Proteobacteria (Gamma)
    • Aeromonadales
      • Aeromonas
      • Succinomonas
      • Succinivibrio
      • Ruminobacter
    • Chromatiales
      • Nitrosococcus
      • Thiocapsa
    • Enterobacteriales
      • Enterobacter
      • Escherichia
      • Klebsiella
      • Salmonella
      • Wigglesworthia
      • Yersinia
    • Legionellales
      • Coxiella
      • Legionella
    • Oceanospirales
      • Halomonas
    • Pasteurellales
      • Pasteurella
    • Pseudomonadales
      • Acinetobacter
      • Azotobacter
      • Pseudomonas
      • Psychrobacter
    • Thiotrichales
      • Beggiatoa
      • Thiomargarita
    • Vibrionales
      • Vibrio
    • Xanthomonadales
      • Xanthomonas
  • Proteobacteria (Delta/Epsilon)
    • Campylobacterales
      • Campylobacter
      • Helicobacter
    • Myxococcales
      • Myxococcus
    • Desulfobacterales
      • '''Desulfosarcina'''
    • Desulfuromonadales
      • Geobacter
      • Desulfuromonas
  • Spirochaetes
    • Spirochaetales
      • Borrelia
      • Leptospira
      • Treponema
  • Thermotogae
    • Thermotogales
      • Petrotoga
      • Thermotoga
  • Thermus/Deinococcus group
    • Deinococcales
      • Deinococcus
    • Thermales
      • Thermus
  • Crenarchaeota
    • Desulfurococcales
      • Aeropyrum
      • Desulfurococcus
      • Pyrodictium
      • Ignicoccus
      • Thermosphaera
    • Sulfolobales
      • Sulfolobus
    • Thermoproteales
      • Thermoproteus
  • Euryarchaeota
    • Archaeoglobales
      • Archaeoglobus
    • Haloarchaea (Halobacteriales)
      • Haloarcula
      • Halobacterium
      • Halococcus
      • Haloferax
      • Natronococcus
      • Natronomonas
    • Methanobacteriales
      • Methanothermobacter
      • Methanosphaera
    • Methanococcales
      • Methanococcus
      • Methanoculleus
    • Methanosarcinales
      • Methanosarcina
    • Methanopyrales
      • Methanopyrus
    • Thermococcales
      • Pyrococcus
      • Thermococcus
    • Thermoplasmatales
      • Ferroplasma
      • Picrophilus
      • Thermoplasma
    • Thermoproteales
      • Pyrobaculum
  • Korarchaeota
  • Nanoarchaeota
      • Nanoarchaeum

Opisthokonta

  • Metazoa (multicellular animals)
  • Choanoflagellata
  • Fungi (Eumycota, true fungi)
    • Ascomycota
      • Aspergillus
      • Magnaporthe
      • Morchella
      • Neurospora
      • Penicillium
      • Saccharomyces
    • Basidiomycota
      • Cryptococcus
    • Chytridiomycota
    • Microsporidia
    • Zygomycota

Viridiplantae (algae & plant)

  • Multicellular Plants
  • Charophyta
  • Chlorophyta
  • Rhodophyta

Amebozoa

  • Amebas
  • Pelobionta
  • Myxomycota (slime molds)
    • Dictyosteliida
    • Myxogastria (myxomycetes)
    • Protostelida

'Cercozoa (shelled amebas)'

  • 'Foraminifera'
  • 'Radiolaria'
  • 'Euglyphids'

Alveolata (have cortical alveoli)

  • Ciliophora
    • Didinium
    • Paramecium
    • Stentor
    • Suctoria
    • Vorticella
  • Dinoflagellata
    • Alexandrium
    • Ceratium
    • Pfiesteria
    • Zooxanthellae
  • Apicomplexa
    • Piroplasmida
      • Babesia
    • Haemosporida
      • Leukocytozoon
      • Plasmodium
    • Coccidia
      • Cryptosporidium
      • Cyclospora
      • Sarcocystis

Marine flagellates (other)Heterokonta (Stramenopiles)

  • Bicosoecids
  • ' Chrysophyta'
  • Actinophrydae
  • Bacillariophyta (diatoms)
  • Chrysophyceae
  • Xanthophyceae
  • Oomycota
  • Labyrinthulids
  • Opalinids
  • Phaeophyceae (kelp)
  • Haptophytes
    • Emiliania

Discicristata

  • Acrasids
  • Euglenozoa
  • Trypanosoma
    • Trypanosoma
    • Leishmania

Excavata

  • Diplomonads
    • Giardia
  • Oxymonads
  • Parabasalids
    • Mixotricha
    • Trichomonas
  • Retortamonads

Emerging Eukaryotes

  • Nano- and Picoeukaryotes