Salmonella enterica NEU2011

Figure 1: Salmonella enterica
Transmission Electron Micrograph of Salmonella enterica. Photogragh from Todar's Online Textbook of Bacteriology (1).

Classification

Higher Order Taxa

Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae

Genus & Species

Salmonella enterica

Description and Significance

Salmonella enterica is a gram-negative, rod-shaped, flagellated bacterium (figure 1) that is of interest due to its ability to cause infectious disease in humans and animals.(2), Salmonella sp. are facultative, being capable of both aerobic respiration for the production ATP as well as fermentation in the absence of oxygen. Dr. Daniel E. Salmon was the first person to identify Salmonella species over 100 years ago, currently there are approximately 2,300 serotypes known. S. enterica infection is known as Salmonellosis; S. enterica subspecies enterica serovar thyphi is a subspecies that is responsible for typhoid fever in humans by invading the gastrointestinal tract. Much of the current understanding of cellular and molecular functions in a cell has been made possible by using Salmonella. For example, S. enterica subspecies enterica serovar Typhimurium, was the first bacteria used to observe transduction by Zinder and Lederberg in 1952. Since then, a vast number of discoveries have been made using Salmonella ranging from gene regulation mechanisms, to cell surface antigen interactions with immune cells (1), (3).

Identification Characteristics

• PADase- negative
• Tryptophan deaminase- negative
• Urease- negative
• Indole- negative
• Lactose- negative
• Citrate-positive: can grow on Simon's Citrate Agar
• Produces acid and gas for glucose
• H2S produced from thiosulfate (1)

Genome Structure

Figure 2: Chromosome (left) and plasmid pSLT (right) of Salmonella enterica serovar Typhimurium LT2
The color scheme (explained in the key) shows what is specific to this serovar(blue) and what is specific to Salmonella(green) and what is found on all genomes (red). The outermost circle is the forward strand of the coding orientation and the inside circle is the reverse strand. The inner black circle is the G+C content; the purple, yellow innermost circle is the GC bias. The position of the origin of replication(ORI) and terminus(TER) are shown #).

The genome of S. enterica serovar Typhi Ty2 is almost 4.8 megabases long and is comprised of 52.05% G-C base pairs. There are 4323 genes, all of which encode for functioning proteins. There are 78 tRNA genes contained within the genome along with 22 rRNA genes. The genome of S. enterica differs from that of Escherichia coli by ~10% and all serovar subtypes have as much as a 1% difference amongst each other in regards to net base pair differences. (4)

The genome can include plasmids but all subtypes have one main circular chromosome. (5)

The genome contains some outlying genes which are mostly unrelated to the genes contained within the base genome; some of these genes contain increased G-C base pairs which suggests that they were acquired more recently than most of the genome through a horizontal gene transfer. An example of these potentially newer genes would be the Salmonella pathogenicity island genes (abbreviated to "SPI", the two primary SPIs are known as SPI-1 and SPI-2) which affect the survival of S. enterica in eukaryotic cells. The study of S. Typhi and its single nucleotide polymorphisms (SNPs) has shown that it may be as young as 30,000 years old which would put its divergence far downfield from the divergence between S. enterica and Escherichia coli. (5)

Cell Structure and Metabolism

S. enteric in a gram-negative, peritrichously flagellated, faculatively anaerobic, bacilli.

Antigens
Salmonella species are characterized by three antigens present on the cell, as shown in figure 3.

Figure 3: The antigenic structure of Salmonella
These are the antigens used in serologic typing. Picture from Textbook of Diagnostic Microbiology (11).

• H antigen: This is the flagellar antigen. It occurs in either phase 1 or phase 2 and can alternate which is expressed (6),(7).

• O antigen: This is the somatic antigen. It is present on the outer membrane and its specificity is determined by the nature of the repeating units in the outer O-polysaccharide chain (6).

• Vi antigen: This is the virulence antigen. It is a capsular polysaccharide overlays the O antigen. It is not possessed by all serovars. This capsule is not necessary for infection, increase the infectivity by making it less detectable by the body’s immune system (8).

Fimbriae
S. enterica also possesses type I fimbriae, typical of other enteric bacteria, which aid in binding to epithelium cells (9). They are shorter than flagella but have a similar peritrichous distribution. They are made up of major and minor protein subunits that form a cylinder around a hollow core (10). Not all strains of S. enterica express fimbriae at the same time, but the fimbriaeted ones appear to be more virulent (11).

Siderophores
S. enterica also has the ability to to extract iron from host proteins by siderophores, which are made by the cell when iron concentration is low. There is also evidence that suggests siderophores contribute to virulence (13).

Metabolism
This bacteria exhibits mixed-acid heterofermentation of glucose to produce ATP. This produces CO2 and H2 with various acid end-products, such as formate, acetate, lactate, and succinate (12). S. enterica can also feed on maltose and maltodextrins through a type I, ATP-binding cassette(ABC) transporter. This system is encoded on the maltose regulon. Maltose is imported into the cell by crossing the outer membrane through a homotrimeric maltoporin, the maltose then binds to maltose-binding protein, which along with a protein with pore-forming subunits and an ATP-binding subunit is tranlocated across the inner-membrane where is can be used by the cell (14).

Ecology

The main habitat where Salmonella is found is in the intestines of animals and humans. It is also likely to find them inhabiting soil, water, and some plants due to human or animal excretion into the environment (1). Salmonella enterica may be found in many foods due to fecal contamination by infected or carrier animals or humans (15). Most commonly, food that is grown in soil that is treated with manure to increase the fertility of that land can be contaminated with S. enteric as well as other pathogenic microbes (16).

Pathology

Figure 4: Invasion of intestinal cells
Transmission electron micrograph taken of S. enterica serovar Typhimurium invading human intestinal epithelial cells. (source #).

Infectious diseases caused by S. enterica depends largely on secreted proteins and adhesion from both fimbrial and non-fimbrial sources to create a biofilm and contact with the host cell (17). Bacterial cells enter the cells that line the intestine, and the host cell’s membrane ruffles as a response to the initial attachment of the bacteria, this can be seen in figure 4. Ruffling is related to a triggering reaction that results in macropinocytosis. The vesicles of macropinocytosis are fairly large, providing an efficient route for non-selective endocytosis of solute macromolecules (18). The entrance of the bacterial cells briefly harms the microvilli on the cell surface. Following this disruption, white blood cells flood the mucosa which alters the homeostasis between absorption and secretion in the body (19).

Bacterial cells harm the host cells by causing intracellular unrestricted calcium to rise and dislocate the cytoplasm. The infectious cells can then be transferred to the liver or spleen, where it multiplies (6). S.enterica either returns to the host’s intestinal tract, or can be defecated. In addition to food contamination, further infection often occurs from infested feces present in polluted water, soil, or other unclean environments.

S. enterica is the cause of many cases of abdominal complications like gastroenteritis. When the balance between absorption and secretion is altered, initial symptoms include abdominal cramps, diarrhea, fever, and nausea. Most cases caused by food contamination resolve themselves within one week’s time, but more serious cases often need fluoroquinolone or cephalosporins, both are broad-spectrum antibiotics that can respectively kill the organism by stoping the cell wall from forming (20).

Current Research

Much research is currently being done on drug-resistant, multidrug-resistant, and quinolones-resistant strains of Salmonella. Quinolones are classified as any class of antibiotics used in treating various infections, primarily gram-negative infections (21). A great deal information about the molecular mechanism of S. enterica resistance has recently come from sequencing the QRDR area of the gene gyrA (22). The gyrA gene encodes a subunit of DNA gyrase, and mutations in the QRDR area of the gyrA gene causes various resistant mechanisms to arise. Quinolones resistance commonly appears at low levels by gaining a preliminary resistance mutation, which can progress to stronger resistance levels to include resistance to second generation quinolones (first generation fluoroquinolones), and further on to second and third generation fluoroquinolones (23). This demonstrates how the Salmonella bacterium seems to discover ways to evolve and find new ecological roles, as we attempt to eradicate the bacterial pathogens. (24).

In addition to resistance studies, there is also investigation on faster detection of S. enterica. The two main mechanisms for detection are PCR based and culture based. PCR is beneficial in that it has the ability to be sensitive and specific. The indicated region is the only one that is coded for, so it can be done much quicker and give better specificity in that coded region. Culture based methods are more time consuming, but it codes the entire sample. In animals and their feed, the culture based methods have been found to be more successful when tracing areas because a detailed report can be compiled (25). In humans, the common method of detection via blood culture takes days and is not as effective as PCR suggested methods if treatment is needed immediately. This year, Zhou and Pollard have developed a sensitive blood culture PCR technique that can identify Salmonella enterica serovar Typhi in the same day with precise diagnosis (22).

References

1. Todar K. Todar's Online Textbook of Bacteriology. Internet. Madison(WI). c2008. cited 2011 Mar 27. about 100 screens.

2. Author unknown. 2006. Salmonella Questions and Answers. United States Department of Agriculture Food Safety and Inspection Service. Accessed February 19, 2011.

3. Spohn G, Scarlato V. Motility, Chemotaxis, and Flagella. In: Mobley H, Mendz GL, Hazell SL. Helicobacter pylori Physiology and Genetics. Washington(DC): ASM Press; 2001

McClelland1 M, Sanderson KE, Spieth J, Clifton SW, Latreille P, Courtney L, Porwollik S, Ali J, Dante M, Du F, et. al. Complete genome structure of Salmonella enterica serovar Typhimurum LT2. Nature. 2001; 413: 852-856

4. Author unknown. Salmonella enterica serovar Typhi Ty2 Genome Page. J. Craig Venter Institute. Accessed March 28, 2011.

5. Baker S and Dougan G. The Genome of Salmonella enterica Serovar Typhi. J. Clinical Infectious Diseases. 2007; 45(1): 29-33.

6. Giannella, RA. Salmonella. In: Barron S editor. Medical Microbiology. 4th ed. Galvaston(TX):University of Texas Medical Branch; 1996.

7. Yamamoto S, Kutsukake K. FljA-Mediated Posttranscriptional Control of Phase 1 Flagellin Expression in Flagellar Phase Variation of Salmonella enterica Serovar Typhimurium. Journal of Bacteriology. 2006; 188(3): 958-967.

8. Wain J, House D, Zafar A, Baker S, Nair S, Kidgell C, Bhutta Z, Dougan G, Hasan R. Vi Antigen Expression in Salmonella enterica Serovar Typhi Clinical Isolates from Pakistan. Journal of Clinical Microbiology. 2005; 43(3): 1158-1165.

9. Madigan M, Martinko J, Dunlap P, Clark D. Brock Biology of Microorganisms. San Francisco (CA): Pearson Education; 2009.

10. Thorns C, Woodward M. Fimbriae of Salmonella. In: Wray C, Wray A, editors. Salmonella in Domestic Animals. New York: CABI Publishing; 2000. p. 35-55.

11. Mahon CR, Manuselis G. Enterobacteriaceae. In: Mahon CR, Manuselis G, editors. Textbook of Diagnostic Microbiology. Philadelphia: W.B. Saunders; 1995.

12. Jurtshuk P. Bacterial Metabolism. In: Baron S, editor. Medical Microbiology. 4th ed. Galveston (TX): University of Texas Medical Branch; 1996.

13. Peterson J. Bacterial Pathogenesis. In: Barron S editor. Medical Microbiology. 4th ed. Galvaston(TX):University of Texas Medical Branch; 1996.

14. Bordignon E, Grote M, Schnelder E. the maltose ATP-binding cassette Transporter in the 21st century- towards a structure dynamic perspective on its mode of action. Molecular Microbiology. 2010. 77(6). P. 1354–1366

15. Foltz, V.D. Salmonella Ecology. Journal of the American Oil Chemist’s Society. 1968. Volume 46. P.222-224.

16. Semenov, Alexander V. Ecology and modelling of Escherichia coli O157:H7 and Salmonella enterica serovar Typhimurium in cattle manureand soil. Wageningen University: the Netherlands. 2008.

17. Hensel M (2009). "Secreted Proteins and Virulence in Salmonella enterica". Bacterial Secreted Proteins: Secretory Mechanisms and Role in Pathogenesis. Caister Academic Press. ISBN 978-1-904455-42-4.

18. Swanson, JA, and C. Watts. "Macropinocytosis." Trends Cell Biology 5.11 (1995): 424-28. Web. 16 Mar. 2011.

19. McCormick B, Miller S, Carnes D, Madara J. Transepithelial Signaling to Neutrophils by Salmonellae: a Novel Virulence Mechanism for Gastroenteritis. Infection and Immunity. 1995; 63(6): 2302-2309.

20. Centers for Disease Control and Prevention, Salmonella. 2011. Web. 16 Mar 2011. Division of Foodborne, Waterborne, and Environmental Diseases.

21. Koyuncu S, Andersson G, Haggblom P. Accuracy and Sensitivity of Commercial PCR-Based Methods for Detection of Salmonella enterica in feed. Applied and Environmental Microbiology. 2010; 76 (9): 2815-2822.

22. Jimenez A, Moreno Y, Gonzalex A. Mendez-Vilas A, editor. Current Research Topics in Applied Microbiology and Microbial Biotechnology. Hackensack: World Scientific; 2009.

23. Morgan-Linnell SK, Zechiedrich L. Contributions of the combined effects of topoisomerase mutations toward fluoroquinolone resistance in Escherichia coli. Antimicrobial Agents Chemotherapy. 2007; 51(11):4205-4208.

24. Velge P, Cloeckaert A, Barrow P. Emergence of Salmonella epidemics: the problems related to Salmonella enterica serotype Enteritidis and multiple antibiotic resistance in other major serotypes. Veterinary Research. 2005; 36 (3): 267-288.

25. Zhou L, Pollard A. A fast and highly sensitive blood culture PCR method for clinical detection of Salmonella enterica serovar Typhi. Annals of Clinical Microbiology and Antimicrobials. 2010; 9 (14): 1-7.

Edited by Abigail Bootes, Matthew Brennan, Alex Birch, and Danielle Laramee for BIOL2321 Microbiology, 2011, Northeastern University