Photobacterium leiognathi: Difference between revisions

From MicrobeWiki, the student-edited microbiology resource
No edit summary
No edit summary
Line 129: Line 129:
*** '''''Roseobacter'''''
*** '''''Roseobacter'''''
** '''Rhodospirales'''
** '''Rhodospirales'''
*** '''''Acetobacter'''''
*** '''''[https://internal.kenyon.edu/mediawiki-1.6.6/index.php/Acetobacter Acetobacter]'''''
*** '''''Rhodospirillum '''''
*** '''''Rhodospirillum '''''
** '''Rickettsiales'''
** '''Rickettsiales'''
*** '''''Rickettsia'''''
*** '''''Rickettsia'''''
*** '''Mitochondria'''
*** '''[https://internal.kenyon.edu/mediawiki-1.6.6/index.php/Mitochondria Mitochondria]'''
*** '''''Wolbachia'''''<br />
*** '''''Wolbachia'''''<br />
** '''Sphingomonadales'''
** '''Sphingomonadales'''
Line 141: Line 141:
* <font size="3">'''Proteobacteria (Beta)'''</font>
* <font size="3">'''Proteobacteria (Beta)'''</font>
** '''Burkholderiales'''
** '''Burkholderiales'''
*** '''''Alcaligenes'''''
*** '''''[https://internal.kenyon.edu/mediawiki-1.6.6/index.php/Alcaligenes Alcaligenes]'''''
*** '''''Burkholderia'''''
*** '''''[https://internal.kenyon.edu/mediawiki-1.6.6/index.php/Burkholderia Burkholderia]'''''
*** '''''Leptothrix'''''
*** '''''Leptothrix'''''
*** '''''Sphaerotilus'''''
*** '''''Sphaerotilus'''''
Line 151: Line 151:
** '''Nitrosomonadales'''
** '''Nitrosomonadales'''
*** '''''Nitrosomonas'''''
*** '''''Nitrosomonas'''''
*** '''''Gallionella'''''
*** '''''[https://internal.kenyon.edu/mediawiki-1.6.6/index.php/Gallionella Gallionella]'''''
*** '''''Spirillum'''''
*** '''''Spirillum'''''
** ''''''Rhodocyclales''''''
** ''''''Rhodocyclales''''''
*** '''''Azoarcus<br />'''''
*** '''''[https://internal.kenyon.edu/mediawiki-1.6.6/index.php/Azoarcus Azoarcus]<br />'''''
* '''Proteobacteria (Gamma)'''
* <font size="3">'''Proteobacteria (Gamma)'''</font>
** '''Aeromonadales'''
** '''Aeromonadales'''
*** '''''Aeromonas'''''
*** '''''[https://internal.kenyon.edu/mediawiki-1.6.6/index.php/Aeromonas_Hydrophila Aeromonas]'''''
*** '''''Succinomonas'''''
*** '''''Succinomonas'''''
*** '''''Succinivibrio'''''
*** '''''Succinivibrio'''''
Line 165: Line 165:
*** '''''Thiocapsa<br />'''''
*** '''''Thiocapsa<br />'''''
** '''Enterobacteriales'''
** '''Enterobacteriales'''
*** '''''Enterobacter'''''
*** '''''[https://internal.kenyon.edu/mediawiki-1.6.6/index.php/Enterobacter Enterobacter]'''''
*** '''''Escherichia'''''
*** '''''[https://internal.kenyon.edu/mediawiki-1.6.6/index.php/Escherichia Escherichia]'''''
*** '''''Klebsiella'''''
*** '''''[https://internal.kenyon.edu/mediawiki-1.6.6/index.php/Klebsiella Klebsiella]'''''
*** '''''Salmonella'''''
*** '''''Salmonella'''''
*** '''''Wigglesworthia'''''
*** '''''Wigglesworthia'''''
*** '''''Yersinia<br />'''''
*** '''''Yersinia<br />'''''
** '''Legionellales'''
** '''Legionellales'''
*** '''''Coxiella'''''
*** '''''[https://internal.kenyon.edu/mediawiki-1.6.6/index.php/Coxiella Coxiella]'''''
*** '''''Legionella<br />'''''
*** '''''Legionella<br />'''''
** '''Oceanospirales'''
** '''Oceanospirales'''

Revision as of 14:57, 7 June 2006

The Microbial Biorealm


Phylo domains home.gif

A Microbial Diversity Resource



Student Authors: Ryotaro Tashiro '09, Molly Schlemmer '08, Shrochis Karki '09, Allison Whipple '06, Zeva Levine (Beloit), Laura Damon-Moore (Beloit), Ariel Kahrl (Oberlin), Hannah Sacks '08, Michael Stulberg '05, Casey M. Smith '06, and Shana Scogin '07
Advisor: Joan Slonczewski, Biology Dept.
Funding: HHMI awards to Kenyon College, 2000, 2004

Review: Focus on Microbiology Education, Jennifer L. Taylor, authors. Licensed for use, ASM MicrobeLibrary

Recommended Sites: NCBI Taxonomy, NCBI Microbial Genomes, The Prokaryotes: An Evolving Electronic Resource, LBSN List of Bacterial Names, MB409 Microbial Diversity, Science, <font PNAS, ASM Journals, Nature

Copyright notice. Readers may view, browse, and/or download material for noncommercial personal purposes. Please credit our site for use. Materials on our site obtained with permission from other sources require permission from those sources for further reproduction.

Disclaimer. Information on this site is provided solely for educational purposes. Medical questions should be referred to a physician.



Microbial Phylogeny

Within each Domain these ranks are shown: Division, Order, Genus. Links provide full taxonomy and description.

Bacteria

Archaea

Eukarya

  • Cyanobacteria
    • Chloroplast
    • Chroococcales
    • Nostocales
    • Oscillatoriales
      • Spirulina
      • Trichodesmium
    • Pleurocapsales
      • Pleurocapsa
    • Prochlorophytes
      • Prochlorococcus
      • Prochloron
  • Firmicutes (Gram positive)
  • Nitrospirae
    • Nitrospirales
      • Leptospirillum
      • Nitrospira
      • Thermodesulfo-bacterium
  • Planctomycetes
    • Planctomycetales
  • Proteobacteria (Alpha)
  • Proteobacteria (Beta)
  • Proteobacteria (Gamma)
    • Aeromonadales
      • Aeromonas
      • Succinomonas
      • Succinivibrio
      • Ruminobacter
    • Chromatiales
      • Nitrosococcus
      • Thiocapsa
    • Enterobacteriales
    • Legionellales
    • Oceanospirales
      • Halomonas
    • Pasteurellales
      • Pasteurella
    • Pseudomonadales
      • Acinetobacter
      • Azotobacter
      • Pseudomonas
      • Psychrobacter
    • Thiotrichales
      • Beggiatoa
      • Thiomargarita
    • Vibrionales
      • Vibrio
    • Xanthomonadales
      • Xanthomonas
  • Proteobacteria (Delta/Epsilon)
    • Campylobacterales
      • Campylobacter
      • Helicobacter
    • Myxococcales
      • Myxococcus
    • Desulfobacterales
      • '''Desulfosarcina'''
    • Desulfuromonadales
      • Geobacter
      • Desulfuromonas
  • Spirochaetes
    • Spirochaetales
      • Borrelia
      • Leptospira
      • Treponema
  • Thermotogae
    • Thermotogales
      • Petrotoga
      • Thermotoga
  • Thermus/Deinococcus group
    • Deinococcales
      • Deinococcus
    • Thermales
      • Thermus
  • Crenarchaeota
    • Desulfurococcales
      • Aeropyrum
      • Desulfurococcus
      • Pyrodictium
      • Ignicoccus
      • Thermosphaera
    • Sulfolobales
      • Sulfolobus
    • Thermoproteales
      • Thermoproteus
  • Euryarchaeota
    • Archaeoglobales
      • Archaeoglobus
    • Haloarchaea (Halobacteriales)
      • Haloarcula
      • Halobacterium
      • Halococcus
      • Haloferax
      • Natronococcus
      • Natronomonas
    • Methanobacteriales
      • Methanothermobacter
      • Methanosphaera
    • Methanococcales
      • Methanococcus
      • Methanoculleus
    • Methanosarcinales
      • Methanosarcina
    • Methanopyrales
      • Methanopyrus
    • Thermococcales
      • Pyrococcus
      • Thermococcus
    • Thermoplasmatales
      • Ferroplasma
      • Picrophilus
      • Thermoplasma
    • Thermoproteales
      • Pyrobaculum
  • Korarchaeota
  • Nanoarchaeota
      • Nanoarchaeum

Opisthokonta

  • Metazoa (multicellular animals)
  • Choanoflagellata
  • Fungi (Eumycota, true fungi)
    • Ascomycota
      • Aspergillus
      • Magnaporthe
      • Morchella
      • Neurospora
      • Penicillium
      • Saccharomyces
    • Basidiomycota
      • Cryptococcus
    • Chytridiomycota
    • Microsporidia
    • Zygomycota

Viridiplantae (algae & plant)

  • Multicellular Plants
  • Charophyta
  • Chlorophyta
  • Rhodophyta

Amebozoa

  • Amebas
  • Pelobionta
  • Myxomycota (slime molds)
    • Dictyosteliida
    • Myxogastria (myxomycetes)
    • Protostelida

'Cercozoa (shelled amebas)'

  • 'Foraminifera'
  • 'Radiolaria'
  • 'Euglyphids'

Alveolata (have cortical alveoli)

  • Ciliophora
    • Didinium
    • Paramecium
    • Stentor
    • Suctoria
    • Vorticella
  • Dinoflagellata
    • Alexandrium
    • Ceratium
    • Pfiesteria
    • Zooxanthellae
  • Apicomplexa
    • Piroplasmida
      • Babesia
    • Haemosporida
      • Leukocytozoon
      • Plasmodium
    • Coccidia
      • Cryptosporidium
      • Cyclospora
      • Sarcocystis

Marine flagellates (other)Heterokonta (Stramenopiles)

  • Bicosoecids
  • ' Chrysophyta'
  • Actinophrydae
  • Bacillariophyta (diatoms)
  • Chrysophyceae
  • Xanthophyceae
  • Oomycota
  • Labyrinthulids
  • Opalinids
  • Phaeophyceae (kelp)
  • Haptophytes
    • Emiliania

Discicristata

  • Acrasids
  • Euglenozoa
  • Trypanosoma
    • Trypanosoma
    • Leishmania

Excavata

  • Diplomonads
    • Giardia
  • Oxymonads
  • Parabasalids
    • Mixotricha
    • Trichomonas
  • Retortamonads

Emerging Eukaryotes

  • Nano- and Picoeukaryotes