Viral Biorealm: Difference between revisions
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<center>[[Image:Viralbiorealm_banner.jpg|center]]</center><br> | |||
'''Educators:''' You may assign Microbial Biorealm page creation and editing as a project for your students. We create a template page for your assignment, which you may edit to meet your needs. See for example the pages created by the following classes: | |||
* BIMM120 Bacteriology, Dr. Rachel Larsen and Dr. Kit Pogliano, [[UCSD | University of California at San Diego]] | |||
* BI 230 Microbiology, Dr. Kirk Bartholomew, [[Sacred Heart University]] | |||
* MB 103 Introductory Topics in Microbiology, [http://www.mbio.ncsu.edu/JWB/home.html James Brown], NC State University (student pages in progress) | |||
Your students receive individual passwords. Assessment and "grading" are up to you; after your class is over, we review pages for our standards. Students of all levels, from first-year to graduate students, have contributed pages to our site.<br><br> | |||
'''Managing Editor: [mailto:barichd@kenyon.edu '''Daniel Barich '05''']<br> | |||
'''Advisor:''' [http://biology.kenyon.edu/slonc/slonc.htm Joan Slonczewski], [http://biology.kenyon.edu/welcome.htm Biology Dept], [http://www.kenyon.edu Kenyon College].<br /> | |||
'''Funding:''' [http://biology.kenyon.edu/HHMI/index.htm HHMI] award to [http://www.kenyon.edu Kenyon College], 2004'''<br><br> | |||
'''Student Editors:''' | '''Student Editors:''' | ||
Molly Schlemmer '08, Shrochis Karki '09, Daniel Barich '05, Ryotaro Tashiro '09<br> | Molly Schlemmer '08, Shrochis Karki '09, Daniel Barich '05, Ryotaro Tashiro '09<br> | ||
For alphabetical listing, see [[Taxonomy Index]]. New virus contributions are welcome.<br> | For alphabetical listing, see [[Taxonomy Index]]. New virus contributions are welcome.<br> | ||
To become an editor, | To become an editor, you can request a [[Contact MicrobeWiki|free account]].<br><br> | ||
<font size="+2" color="#55075D">Virus Classification: The Baltimore System</font | <font size="+2" color="#55075D">Virus Classification: The Baltimore System</font> | ||
----<br> | ----<br> | ||
==Group I. Double-stranded DNA viruses== | ==Group I. Double-stranded DNA viruses== | ||
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:[[Siphoviridae]] | :[[Siphoviridae]] | ||
:[[Tectiviridae]] | :[[Tectiviridae]] | ||
'''Archaeal | '''Archaeal viruses:''' | ||
:[[Ampullaviridae]] | |||
:[[Bicaudaviridae]] | |||
:[[Fuselloviridae]] | :[[Fuselloviridae]] | ||
:[[Globuloviridae]] | |||
:[[Guttaviridae]] | |||
:[[Lipothrixviridae]] | |||
:[[Rudiviridae]] | |||
'''Non-enveloped animal viruses:''' | '''Non-enveloped animal viruses:''' | ||
:[[Adenoviridae]] | :[[Adenoviridae]] | ||
| Line 70: | Line 87: | ||
:[[Bromoviridae]] | :[[Bromoviridae]] | ||
::''[[Bromovirus]]'' | ::''[[Bromovirus]]'' | ||
:[[Tombusviridae]] | |||
::''[[Tombusvirus]]'' | |||
:[[Picornaviridae]] | :[[Picornaviridae]] | ||
::''[[Aphthovirus]]'' | ::''[[Aphthovirus]]'' | ||
| Line 75: | Line 94: | ||
::''[[Hepatovirus]]'' | ::''[[Hepatovirus]]'' | ||
::''[[Rhinovirus]]'' | ::''[[Rhinovirus]]'' | ||
:[[ | :''[[Tobamovirus]]'' | ||
:[[Potyviridae]] | :[[Potyviridae]] | ||
::''[[Potyvirus]]'' | ::''[[Potyvirus]]'' | ||
| Line 83: | Line 102: | ||
:[[Flaviviridae]] | :[[Flaviviridae]] | ||
::''[[Hepacivirus]]'' | ::''[[Hepacivirus]]'' | ||
::''[[Flavivirus]]'' | |||
:[[Togaviridae]] | :[[Togaviridae]] | ||
Latest revision as of 20:06, 11 August 2010
Educators: You may assign Microbial Biorealm page creation and editing as a project for your students. We create a template page for your assignment, which you may edit to meet your needs. See for example the pages created by the following classes:
- BIMM120 Bacteriology, Dr. Rachel Larsen and Dr. Kit Pogliano, University of California at San Diego
- BI 230 Microbiology, Dr. Kirk Bartholomew, Sacred Heart University
- MB 103 Introductory Topics in Microbiology, James Brown, NC State University (student pages in progress)
Your students receive individual passwords. Assessment and "grading" are up to you; after your class is over, we review pages for our standards. Students of all levels, from first-year to graduate students, have contributed pages to our site.
Managing Editor: Daniel Barich '05
Advisor: Joan Slonczewski, Biology Dept, Kenyon College.
Funding: HHMI award to Kenyon College, 2004
Student Editors:
Molly Schlemmer '08, Shrochis Karki '09, Daniel Barich '05, Ryotaro Tashiro '09
For alphabetical listing, see Taxonomy Index. New virus contributions are welcome.
To become an editor, you can request a free account.
Virus Classification: The Baltimore System
Group I. Double-stranded DNA viruses
Replicate using host or viral DNA polymerase.
Non-enveloped bacteriophages:
Archaeal viruses:
- Ampullaviridae
- Bicaudaviridae
- Fuselloviridae
- Globuloviridae
- Guttaviridae
- Lipothrixviridae
- Rudiviridae
Non-enveloped animal viruses:
Enveloped animal viruses:
Group II. Single-stranded DNA
Genome consists of (+) sense DNA. Requires a host DNA polymerase to generate the complementary strand. Non-enveloped.
Non-enveloped bacteriophages:
Non-enveloped animal viruses:
- Parvoviridae
- Circoviridae
Non-enveloped plant viruses:
Group III. Double-stranded RNA
Requires viral RNA-dependent RNA polymerase; usually packages the polymerase before exiting host cell.
Non-segmented, enveloped, bacteriophage:
Segmented, non-enveloped, animal and plant hosts:
Group IV. (+) Sense single-stranded RNA viruses
Require viral RNA-dependent RNA polymerase to generate (-) template for progeny (+) genome. Usually non-segmented.
Non-enveloped bacteriophages:
Non-enveloped animal and plant viruses:
Enveloped animal and plant viruses:
- Coronaviridae
- Flaviviridae
- Togaviridae
Group V. (-) Sense single-stranded RNA viruses
Require viral RNA-dependent RNA transcriptase.
Segmented, enveloped:
Nonsegmented, enveloped:
Segmented (+/-) strand enveloped:
Group VI. RNA Reverse Transcribing Viruses (Retroviruses)
Require viral reverse transcriptase to generate DNA copy for integration into host chromosome. Package transcriptase before exiting host cell.
- Retroviridae
- Lentivirus
Group VII. DNA Reverse Transcribing Viruses (Pararetroviruses)
DNA is transcribed to RNA intermediate; reverse-transcribed to DNA. Infects plant cells, which have cytoplasmic reverse transcriptase; or package a viral reverse transcriptase.
Non-enveloped plant viruses:
Enveloped animal viruses:
- Hepadnaviridae
- Orthohepadnavirus
