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<center>[[Image:Microbialbiorealm_banner.jpg|center]]</center> | |||
<center>'''<h2>A Microbial Diversity Resource</h2>'''</center> | |||
---- | |||
New contributions are welcome. Students, researchers, and others with knowledge and interest in microbiology are welcome to compose and edit pages. To become an editor, please request a [[Contact MicrobeWiki|free account.]]<br><br> | |||
'''Educators:''' You may assign MicrobeWiki page creation and editing as projects for your students. We create a [[List of class template pages | template page]] for your assignment, which you may edit to meet your needs. See for example the pages created by the following classes: | |||
{{class list}} | |||
Your students receive individual passwords. Assessment and grading are up to you; after your class is over, we review pages for our standards. Students of all levels, from first-year to graduate students, have contributed pages to our site.<br><br> | |||
'''Managing Editor<br> | |||
[mailto:barichd@kenyon.edu '''Daniel Barich '05''']<br> | |||
'''Advisor:''' [http://biology.kenyon.edu/slonc/slonc.htm Joan Slonczewski], [http://biology.kenyon.edu/welcome.htm Biology Dept], [http://www.kenyon.edu Kenyon College].<br /> | |||
'''Funding:''' [http://biology.kenyon.edu/HHMI/index.htm HHMI] awards to [http://www.kenyon.edu Kenyon College], 2000, 2004'''<br> | |||
'''Student Editors at [http://www.kenyon.edu Kenyon College]:''' Ryotaro Tashiro '09, Molly Schlemmer '08, Shrochis Karki '09, Allison Whipple '06, Zeva Levine ([http://www.beloit.edu/ Beloit]), Laura Damon-Moore ([http://www.beloit.edu/ Beloit]), Ariel Kahrl ([http://www.oberlin.edu/ Oberlin]), Hannah Sacks '08, Michael Stulberg '05, Casey M. Smith '06, and Shana Scogin '07 | |||
'''Reviewed by:''' [http://biology.kenyon.edu/Microbial_Biorealm/MicroBiorealm_Summer2005.pdf Focus on Microbiology Education], Jennifer L. Taylor, Summer 2005. Licensed for use, [http://www.microbelibrary.org/ ASM MicrobeLibrary] | |||
'''Recommended Sites:''' [http://www.ncbi.nlm.nih.gov/Taxonomy/taxonomyhome.html/ NCBI Taxonomy], [http://www.ncbi.nlm.nih.gov/genomes/lproks.cgi NCBI Microbial Genomes], [http://141.150.157.117:8080/prokPUB/index.htm The Prokaryotes: An Evolving Electronic Resource], [http://www.bacterio.cict.fr/ LBSN List of Bacterial Names], [http://www.mbio.ncsu.edu/MB451/home.html MB451 Microbial Diversity], [http://www.scienceonline.org/ Science], [http://www.pnas.org/search.dtl PNAS], [http://www.journals.asm.org/search.dtl ASM Journals], [http://www.journals.asm.org/search.dtl Nature] | |||
'''Copyright notice.''' Readers may view, browse, and/or download material for noncommercial personal purposes. Please credit our site for use. Materials on our site obtained with permission from other sources require permission from those sources for further reproduction. | |||
'''Disclaimer.''' Information on this site is provided solely for educational purposes. Medical questions should be referred to a physician. | |||
---- | |||
<center> | |||
<h2>'''<font color="#55075D">Microbial Phylogeny</font><br /><br />'''</h2> | |||
The [[Three Domains of Life|'''three Domains of Life''']] each have defining characteristics that are both separate and similar.<br> | |||
Within each Domain these ranks are shown: '''<font color="#55075D">Division, Order, Genus</font>. '''Links provide full taxonomy and description. See also [[Taxonomy Index]].''' | |||
{| width="750" border="2" cellpadding="5" | |||
| bgcolor="#FFCCFF" align="center" valign="TOP" | | |||
<font size="+3">'''Bacteria'''</font> | |||
| bgcolor="#CCCCFF" align="CENTER" valign="TOP" | | |||
<font size="+3">'''Archaea'''</font> | |||
| bgcolor="#FFFFCC" align="CENTER" valign="TOP" | | |||
<font size="+3">'''Eukarya'''</font> | |||
|- | |||
| width="33%" height="3527" bgcolor="#FFCCFF" align="left" valign="TOP" | | |||
<font size="3">'''Acidobacteria''' </font> | |||
* '''Acidobacteriaceae''' | |||
** '''''[[Candidatus Chloracidobacterium]]''''' | |||
<font size="3">'''Actinobacteria''' </font> | |||
* '''Actinomycetales''' | |||
** '''''[[Arthrobacter]]''''' | |||
** '''''[[Corynebacterium]]''''' | |||
** '''''[[Frankia]]''''' | |||
** '''''[[Micrococcus]]''''' | |||
** '''''[[Mycobacterium]]''''' | |||
** '''''[[Propionibacterium]]''''' | |||
** '''''[[Streptomyces]]''''' | |||
* '''Bifidobacteriales''' | |||
** '''''[[Bifidobacterium]]''''' | |||
<font size="3">'''Aquificae'''</font> | |||
* '''Aquificales''' | |||
** '''''[[Aquifex]]''''' | |||
<font size="3">'''Bacteroidetes/Chlorobi group'''</font> | |||
* '''Bacteroidales''' | |||
** '''''[[Bacteroides]]''''' | |||
** '''''[[Porphyromonas]]''''' | |||
* '''Chlorobiales''' | |||
** '''''[[Chlorobium]]''''' | |||
* '''Flavobacteriales''' | |||
** '''''[[Flavobacterium]]''''' | |||
<font size="3">'''Chlamydiae/Verrucomicrobia'''</font> | |||
* '''Chlamydiales''' | |||
** '''''[[Chlamydia]]''''' | |||
* '''Verrucomicrobiales''' | |||
** '''''[[Prosthecobacter]]''''' | |||
** '''''[[Verrucomicrobium]]<br />''''' | |||
<font size="3">'''Chloroflexi'''</font> | |||
* '''Chlorflexales''' | |||
** '''''[[Chloroflexus]]''''' | |||
<font size="3">'''Cyanobacteria'''</font> | |||
* '''Chloroplast''' | |||
* '''Chroococcales''' | |||
** '''''[[Chroococcus]]''''' | |||
** '''''[[Merismopedia]]''''' | |||
** '''''[[Synechococcus]]'''''<br /> | |||
* '''Nostocales''' | |||
** '''''[[Anabaena]]''''' | |||
** '''''[[Nostoc]]''''' | |||
* '''Oscillatoriales''' | |||
** '''''[[Spirulina]]''''' | |||
** '''''[[Trichodesmium]]''''' | |||
* '''Pleurocapsales''' | |||
** '''''[[Pleurocapsa]]''''' | |||
* '''Prochlorophytes''' | |||
** '''''[[Prochlorococcus]]''''' | |||
** '''''[[Prochloron]]''''' | |||
<font size="3">'''Firmicutes (Gram positive)'''</font> | |||
* '''Bacillales''' | |||
** '''''[[Bacillus]]''''' | |||
** '''''[[Listeria]]''''' | |||
** '''''[[Staphylococcus]]''''' | |||
* '''Clostridiales''' | |||
** '''''[[Clostridium]]''''' | |||
** '''''[[Dehalobacter]]''''' | |||
** '''''[[Epulopiscium]]''''' | |||
** '''''[[Ruminococcus]]<br />''''' | |||
* '''Lactobacillales''' | |||
** '''''[[Enterococcus]]''''' | |||
** '''''[[Lactobacillus]]''''' | |||
** '''''[[Streptococcus]]''''' | |||
* '''Mollicutes''' | |||
** '''''[[Erysipelothrix]]''''' | |||
** '''''[[Mycoplasma]]'''''<br /><br /> | |||
<font size="3">'''Nitrospirae'''</font> | |||
* '''Nitrospirales''' | |||
** '''''[[Leptospirillum]]''''' | |||
** '''''[[Nitrospira]]''''' | |||
** '''''[[Thermodesulfobacterium]]''''' | |||
<font size="3">'''Planctomycetes'''</font> | |||
* '''Planctomycetales''' | |||
** '''''[[Gemmata]]''''' | |||
** '''''[[Pirellula]]''''' | |||
** '''''[[Planctomyces]]''<br />''' | |||
<font size="3">'''[[Proteobacteria]] (Alpha)'''</font> | |||
* '''Caulobacterales''' | |||
** '''''[[Caulobacter]]''''' | |||
* '''Rhizobiales''' | |||
** '''''[[Agrobacterium]]''''' | |||
** '''''[[Bradyrhizobium]]''''' | |||
** '''''[[Brucella]]''''' | |||
** '''''[[Methylobacterium]]''''' | |||
** '''''[[Prosthecomicrobium]]''''' | |||
** '''''[[Rhizobium]]''''' | |||
** '''''[[Rhodopseudomonas]]''''' | |||
** '''''[[Sinorhizobium]]''''' | |||
* '''Rhodobacterales''' | |||
** '''''[[Rhodobacter]]''''' | |||
** '''''[[Roseobacter]]''''' | |||
* '''Rhodospirales''' | |||
** '''''[[Acetobacter]]''''' | |||
** '''''[[Rhodospirillum]]''''' | |||
* '''Rickettsiales''' | |||
** '''''[[Rickettsia]]''''' | |||
** '''''[[Rickettsia conorii]]''''' | |||
** '''[[Mitochondria]]''' | |||
** '''''[[Wolbachia]]'''''<br /> | |||
* '''Sphingomonadales''' | |||
** '''''[[Erythrobacter]]''''' | |||
** '''''[[Erythromicrobium]]''''' | |||
** '''''[[Sphingomonas]]<br />''''' | |||
<font size="3">'''[[Proteobacteria]] (Beta)'''</font> | |||
* '''Burkholderiales''' | |||
** '''''[[Alcaligenes]]''''' | |||
** '''''[[Burkholderia]]''''' | |||
** '''''[[Leptothrix]]''''' | |||
** '''''[[Sphaerotilus]]''''' | |||
* '''Hydrogenophilales''' | |||
** '''''[[Thiobacillus]]''''' | |||
* '''Neisseriales''' | |||
** '''''[[Neisseria]]''''' | |||
* '''Nitrosomonadales''' | |||
** '''''[[Nitrosomonas]]''''' | |||
** '''''[[Gallionella]]''''' | |||
** '''''[[Spirillum]]''''' | |||
* '''Rhodocyclales''' | |||
** '''''[[Azoarcus]]<br />''''' | |||
<font size="3">'''[[Proteobacteria]] (Gamma)'''</font> | |||
* '''Aeromonadales''' | |||
** '''''[[Aeromonas]]''''' | |||
** '''''[[Succinomonas]]''''' | |||
** '''''[[Succinivibrio]]''''' | |||
** '''''[[Ruminobacter]]''''' | |||
* '''Chromatiales''' | |||
** '''''[[Nitrosococcus]]''''' | |||
** '''''[[Thiocapsa]]<br />''''' | |||
* '''Enterobacteriales''' | |||
** '''''[[Enterobacter]]''''' | |||
** '''''[[Escherichia]]''''' | |||
** '''''[[Klebsiella]]''''' | |||
** '''''[[Salmonella]]''''' | |||
** '''''[[Shigella]]''''' | |||
** '''''[[Wigglesworthia]]''''' | |||
** '''''[[Yersinia]]<br />''''' | |||
* '''Legionellales''' | |||
** '''''[[Coxiella]]''''' | |||
** '''''[[Legionella]]<br />''''' | |||
* '''Oceanospirales''' | |||
** '''''[[Halomonas]]''''' | |||
* '''Pasteurellales''' | |||
** '''''[[Pasteurella]]''''' | |||
* '''Pseudomonadales''' | |||
** '''''[[Acinetobacter]]''''' | |||
** '''''[[Azotobacter]]''''' | |||
** '''''[[Pseudomonas]]''''' | |||
** '''''[[Psychrobacter]]<br />''''' | |||
* '''Thiotrichales''' | |||
** '''''[[Beggiatoa]]''''' | |||
** '''''[[Thiomargarita]]''''' | |||
* '''Vibrionales''' | |||
** '''''[[Vibrio]]''''' | |||
* '''Xanthomonadales''' | |||
** '''''[[Xanthomonas]]''''' | |||
<font size="3">'''[[Proteobacteria]] (Delta/Epsilon)'''</font> | |||
* '''Bdellobvionales''' | |||
** '''''[[Bdellovibrio]]''''' | |||
* '''Campylobacterales''' | |||
** '''''[[Campylobacter]]''''' | |||
** '''''[[Helicobacter]]''''' | |||
* '''Myxococcales''' | |||
** '''''[[Myxococcus]]''''' | |||
* '''Desulfobacterales''' | |||
** '''''[[Desulfosarcina]]''''' | |||
* '''Desulfuromonadales''' | |||
** '''''[[Geobacter]]''''' | |||
** '''''[[Desulfuromonas]]''''' <br /> | |||
<font size="3">'''Spirochaetes'''</font> | |||
* '''Spirochaetales''' | |||
** '''''[[Borrelia]]''''' | |||
** '''''[[Leptospira]]''''' | |||
** '''''[[Treponema]]''''' | |||
<font size="3">'''Thermotogae'''</font> | |||
* '''Thermotogales''' | |||
** '''''Petrotoga''''' | |||
** '''''[[Thermotoga]]''''' <br /> | |||
<font size="3">'''Thermus/Deinococcus group'''</font> | |||
* '''Deinococcales''' | |||
** '''''[[Deinococcus]]''''' | |||
* '''Thermales''' | |||
** '''''[[Thermus]]''''' | |||
| width="34%" bgcolor="#CCCCFF" align="left" valign="TOP" | | |||
<font size="3">'''Crenarchaeota'''</font> | |||
* '''Caldisphaerales''' | |||
** '''''[[Caldisphaera]]''''' | |||
* '''Desulfurococcales''' | |||
** '''''[[Acidilobus]]''''' | |||
** '''''[[Aeropyrum]]''''' | |||
** '''''[[Desulfurococcus]]''''' | |||
** '''''[[Hyperthermus]]''''' | |||
** '''''[[Pyrodictium]]''''' | |||
** '''''[[Ignicoccus]]''''' | |||
** '''''[[Thermosphaera]]''''' | |||
* '''Sulfolobales''' | |||
** '''''[[Sulfolobus]]''''' | |||
** '''''[[Sulfurisphaera]]''''' | |||
* '''Thermoproteales''' | |||
<font size="3">'''Euryarchaeota'''</font> | |||
* '''Archaeoglobales''' | |||
** '''''[[Archaeoglobus]]''''' | |||
* '''Haloarchaea (Halobacteriales)''' | |||
** '''''[[Haloarcula]]''''' | |||
** '''''[[Halobacterium]]''''' | |||
** '''''[[Halococcus]]''''' | |||
** '''''[[Haloferax]]''''' | |||
** '''''[[Haloquadra]]''''' | |||
** '''''[[Halorhabdus]]''''' | |||
** '''''[[Natronococcus]]''''' | |||
** '''''[[Natronomonas]]''''' | |||
* '''Methanobacteriales''' | |||
** '''''[[Methanothermobacter]]''''' | |||
** '''''[[Methanosphaera]]''''' | |||
* '''Methanococcales''' | |||
** '''''[[Methanococcus]]''''' | |||
** '''''[[Methanoculleus]]''''' | |||
* '''Methanomicrobiales''' | |||
** '''''[[Methanofollis]]''''' | |||
* '''Methanosarcinales''' | |||
** '''''[[Methanosarcina]]''''' | |||
* '''Methanopyrales''' | |||
** '''''[[Methanopyrus]]''''' | |||
* '''Thermococcales''' | |||
** '''''[[Pyrococcus]]''''' | |||
** '''''[[Thermococcus]]''''' | |||
* '''Thermoplasmatales''' | |||
** '''''[[Ferroplasma]]''''' | |||
** '''''[[Picrophilus]]''''' | |||
** '''''[[Thermoplasma]]''''' | |||
* '''Thermoproteales''' | |||
** '''''[[Pyrobaculum]]''''' | |||
<font size="3">'''Korarchaeota<br />'''</font> | |||
'''<font size="3">Nanoarchaeota</font>''' | |||
* '''''[[Nanoarchaeum]]''''' | |||
| width="33%" bgcolor="#FFFFCC" align="left" valign="TOP" | | |||
<font size="3">'''Opisthokonta'''</font> | |||
* '''[[Metazoa|Metazoa (multicellular animals)]]''' | |||
* '''[[Choanoflagellata]]''' | |||
* '''Fungi (Eumycota, true fungi)''' | |||
** '''[[Ascomycota]]''' | |||
*** '''''[[Aspergillus]]''''' | |||
*** '''''[[Cladosporium]]''''' | |||
*** '''''[[Magnaporthe]]''''' | |||
*** '''''[[Morchella]]''''' | |||
*** '''''[[Neurospora]]''''' | |||
*** '''''[[Penecillium|Penicillium]]''''' | |||
*** '''''[[Saccharomyces]]''''' | |||
** '''[[Basidiomycota]]''' | |||
*** '''''[[Cryptococcus]]''''' | |||
*** '''''[[Ustilago]]''''' | |||
** '''[[Chytridiomycota]]''' | |||
** '''[[Microsporidia]]''' | |||
** '''[[Zygomycota]]''' | |||
<font size="3">'''Viridiplantae (algae & plant)'''</font> | |||
* '''Multicellular Plants''' | |||
* '''[[Charophyta]]''' | |||
* '''[[Chlorophyta]]''' | |||
* '''[[Rhodophyta]]''' | |||
<font size="3">'''Amebozoa'''</font> | |||
* '''[[Ameba|Amebas]]''' | |||
* '''[[Pelobionta]]''' | |||
* '''Myxomycota (slime molds)''' | |||
** '''[[Dictiostelida|Dictyostelida]]''' | |||
** '''[[Myxogastria|Myxogastria (myxomycetes)]]''' | |||
** '''[[Protostelida]]''' | |||
<font size="3">'''Cercozoa (shelled amebas)'''</font> | |||
* '''[[Foraminifera]]''' | |||
* '''[[Radiolaria]]''' | |||
* '''[[Euglyphids]]''' | |||
<font size="3">'''Alveolata'''</font> '''(have cortical alveoli)''' | |||
* '''[[Ciliophora]]''' | |||
** '''''[[Didinium]]''''' | |||
** '''''[[Paramecium]]''''' | |||
** '''''[[Stentor]]''''' | |||
** '''''[[Suctoria]]''''' | |||
** '''''[[Vorticella]]''''' | |||
* '''[[Dinoflagellata]]''' | |||
** '''''[[Alexandrium]]''''' | |||
** '''''[[Ceratium]]''''' | |||
** '''''[[Pfiesteria]]''''' | |||
** '''[[Zooxanthellae]]''' | |||
* '''[[Apicomplex|Apicomplexa]]''' | |||
** '''Piroplasmida''' | |||
*** '''''[[Babesia]]''''' | |||
** '''Haemosporida''' | |||
*** '''''[[Leukocytozoon]]''''' | |||
*** '''''[[Plasmodium]]''''' | |||
** '''Coccidia''' | |||
*** '''''[[Cryptosporidium]]''''' | |||
*** '''''[[Cyclospora]]''''' | |||
*** '''''[[Sarcocystis]]''''' | |||
<font size="3">'''Marine flagellates (other)'''</font> | |||
<font size="3">'''Heterokonta (Stramenopiles)'''</font> | |||
* '''[[Bicosoecids]]''' | |||
* '''[[Chrysophyta]]''' | |||
* '''[[Actinophrydae]]''' | |||
* '''[[Bacillariophyta]] (diatoms)''' | |||
* '''[[Chrysophyceae]]''' | |||
* '''[[Xanthophyceae]]''' | |||
* '''[[Oomycota]]''' | |||
* '''[[Labyrinthula|Labyrinthulids]]''' | |||
* '''[[Opalinids]]''' | |||
* '''[[Phaeophyceae]] (kelp)''' | |||
* '''Haptophytes''' | |||
** '''''[[Emiliana|Emiliania]]''''' | |||
<font size="3">'''Discicristata'''</font> | |||
* '''[[Acrasids]]''' | |||
* '''[[Euglenozoa]]''' | |||
* '''Trypanosoma''' | |||
** '''''[[Trypanosoma]]''''' | |||
** '''''[[Leishmania]]''''' | |||
<font size="3">'''Excavata'''</font> | |||
* '''[[Diplomonada|Diplomonads]]''' | |||
** '''[[Giardia]]''' | |||
* '''[[Oxymonads]]''' | |||
* '''[[Parabasalia|Parabasalids]]''' | |||
** '''''[[Mixotricha]]''''' | |||
** '''''[[Parabasalia|Trichomonas]]''''' | |||
* '''[[Retortamonads]]''' | |||
<font size="3">'''Emerging Eukaryotes'''</font> | |||
* '''[[Nano- and Picoeukaryotes]]''' | |||
<br /> | |||
|} |
Revision as of 23:57, 4 May 2012
A Microbial Diversity Resource
New contributions are welcome. Students, researchers, and others with knowledge and interest in microbiology are welcome to compose and edit pages. To become an editor, please request a free account.
Educators: You may assign MicrobeWiki page creation and editing as projects for your students. We create a template page for your assignment, which you may edit to meet your needs. See for example the pages created by the following classes:
- BIOL 238 Project Index 2021, Joan L. Slonczewski,Kenyon College
- Microbial Ecology, Dr. Jay Lennon, Indiana University
- SSC111 Soil Microbiology, Kate Scow, University of California, Davis
- MICB301, Dr. William Mohn, University of British Columbia
- Microbial Ecology, Dr. Hidetoshi Urakawa, Florida Gulf Coast University
Your students receive individual passwords. Assessment and grading are up to you; after your class is over, we review pages for our standards. Students of all levels, from first-year to graduate students, have contributed pages to our site.
Managing Editor
Daniel Barich '05
Advisor: Joan Slonczewski, Biology Dept, Kenyon College.
Funding: HHMI awards to Kenyon College, 2000, 2004
Student Editors at Kenyon College: Ryotaro Tashiro '09, Molly Schlemmer '08, Shrochis Karki '09, Allison Whipple '06, Zeva Levine (Beloit), Laura Damon-Moore (Beloit), Ariel Kahrl (Oberlin), Hannah Sacks '08, Michael Stulberg '05, Casey M. Smith '06, and Shana Scogin '07
Reviewed by: Focus on Microbiology Education, Jennifer L. Taylor, Summer 2005. Licensed for use, ASM MicrobeLibrary
Recommended Sites: NCBI Taxonomy, NCBI Microbial Genomes, The Prokaryotes: An Evolving Electronic Resource, LBSN List of Bacterial Names, MB451 Microbial Diversity, Science, PNAS, ASM Journals, Nature
Copyright notice. Readers may view, browse, and/or download material for noncommercial personal purposes. Please credit our site for use. Materials on our site obtained with permission from other sources require permission from those sources for further reproduction.
Disclaimer. Information on this site is provided solely for educational purposes. Medical questions should be referred to a physician.
Microbial Phylogeny
The three Domains of Life each have defining characteristics that are both separate and similar.
Within each Domain these ranks are shown: Division, Order, Genus. Links provide full taxonomy and description. See also Taxonomy Index.
Bacteria |
Archaea |
Eukarya |
Acidobacteria
Actinobacteria
Aquificae
Bacteroidetes/Chlorobi group
Chlamydiae/Verrucomicrobia
Chloroflexi
Cyanobacteria
Firmicutes (Gram positive)
Nitrospirae
Planctomycetes
Proteobacteria (Alpha)
Proteobacteria (Beta)
Proteobacteria (Gamma)
Proteobacteria (Delta/Epsilon)
Spirochaetes
Thermotogae
Thermus/Deinococcus group
|
Crenarchaeota
Euryarchaeota
Korarchaeota Nanoarchaeota |
Opisthokonta
Viridiplantae (algae & plant)
Amebozoa
Cercozoa (shelled amebas) Alveolata (have cortical alveoli)
Discicristata
Excavata Emerging Eukaryotes
|